genome.fa.s22.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  130  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40733146--40733188	18	2.4	18	84	7	61	39	4	2	53	1.34
40733047--40733288	122	2.0	121	85	4	326	40	9	5	44	1.60
40733207--40733233	10	2.7	10	100	0	54	40	7	0	51	1.30
40733151--40733296	65	2.2	65	89	6	215	41	8	4	45	1.54
40735161--40735222	29	2.2	29	88	2	90	59	17	0	22	1.37
40739673--40739700	4	7.0	4	100	0	56	25	0	0	75	0.81
40740117--40740167	16	3.2	16	85	0	75	47	3	21	27	1.68
40740466--40740515	24	2.1	23	82	10	57	60	2	2	36	1.20
40743815--40744021	108	1.9	107	80	5	238	42	14	14	28	1.84
40745585--40745710	64	2.0	64	87	0	180	28	13	12	45	1.80
40750368--40750398	13	2.3	14	94	5	55	29	0	3	67	1.06
40750697--40750822	63	2.0	63	98	0	243	38	7	9	44	1.64
40752755--40752795	21	2.0	21	90	0	64	39	19	26	14	1.90
40759565--40759759	11	18.4	11	69	16	117	61	0	2	35	1.10
40759565--40759768	42	4.9	42	100	0	408	62	0	2	35	1.09
40763130--40763175	11	4.2	11	86	8	58	23	28	0	47	1.52
40763130--40763172	10	4.0	10	82	11	50	23	30	0	46	1.52
40765441--40766431	49	20.2	49	98	0	1894	40	4	6	48	1.48
40769627--40769913	125	2.3	124	90	1	450	28	20	18	33	1.96
40773470--40773597	35	3.6	35	91	1	202	18	10	28	42	1.83
40775593--40775710	62	1.9	59	88	8	175	51	3	4	40	1.38
40775700--40775760	25	2.4	26	79	20	67	52	1	1	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40780775--40780819	23	2.0	23	82	8	56	26	0	0	73	0.84
40785169--40785248	38	2.1	38	95	0	142	32	13	0	53	1.40
40791334--40791451	45	2.7	45	94	2	204	43	23	22	11	1.85
40792348--40792459	45	2.5	45	91	2	174	46	16	22	14	1.83
40797460--40797485	2	13.0	2	100	0	52	50	0	0	50	1.00
40803721--40803799	34	2.5	30	84	15	122	31	0	20	48	1.50
40803728--40803793	34	1.9	34	100	0	132	31	0	19	48	1.49
40803781--40803815	17	2.0	18	88	5	54	31	0	20	48	1.50
40803755--40803827	23	3.1	23	76	9	85	31	0	23	45	1.53
40807010--40807062	14	3.9	14	71	14	56	33	28	13	24	1.93
40807866--40807949	37	2.3	37	87	0	123	36	8	14	40	1.76
40809047--40809114	17	4.1	17	66	11	50	36	0	1	61	1.05
40820115--40820217	41	2.5	41	91	0	170	28	17	23	31	1.97
40823262--40823300	19	2.1	18	85	4	51	12	17	2	66	1.35
40823524--40823602	11	7.4	11	73	22	53	62	0	2	35	1.09
40823497--40823591	41	2.2	42	85	9	122	60	0	3	36	1.13
40823553--40823602	11	4.3	11	82	12	64	66	0	2	32	1.03
40823553--40823631	25	3.1	24	76	16	79	65	0	1	32	1.00
40823578--40823623	9	5.1	9	81	7	58	71	0	0	28	0.86
40823503--40823631	52	2.5	51	83	8	163	63	0	2	34	1.07
40823585--40823659	40	1.9	40	88	2	116	65	0	1	33	1.01
40824374--40824428	25	2.2	25	81	12	60	49	7	1	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40834635--40834705	24	3.0	24	89	0	106	14	15	28	42	1.86
40834637--40834722	24	3.6	24	82	6	102	17	15	24	43	1.87
40841289--40841330	20	2.2	20	87	12	61	57	4	21	16	1.58
40841778--40841807	16	1.9	16	93	6	53	30	0	20	50	1.49
40853952--40853994	18	2.4	18	88	0	59	9	13	6	69	1.35
40863492--40863541	21	2.4	20	83	6	55	20	4	12	64	1.43
40864635--40864721	31	2.8	31	74	8	88	35	1	11	51	1.46
40864739--40864775	19	1.9	19	89	10	58	45	0	0	54	1.00
40869511--40869563	22	2.4	23	78	6	56	62	5	0	32	1.19
40882866--40882897	16	2.0	16	100	0	64	25	18	12	43	1.85
40882970--40883188	45	4.9	45	77	0	168	23	18	14	43	1.87
40882970--40883159	90	2.1	90	82	1	220	24	18	15	42	1.88
40884383--40884450	34	2.0	34	94	0	118	27	10	19	42	1.83
40884952--40885039	44	2.0	44	97	0	167	34	19	15	30	1.93
40885483--40885687	45	4.6	45	81	3	220	22	20	14	43	1.87
40888220--40888287	36	1.9	36	87	3	102	36	22	13	27	1.91
40890826--40890858	13	2.5	13	95	0	57	63	0	0	36	0.95
40894123--40894370	129	2.0	125	83	9	312	30	13	20	35	1.91
40895847--40895955	45	2.5	44	87	4	166	18	22	11	48	1.79
40898746--40898863	61	1.9	61	84	3	157	34	8	12	44	1.73
40904221--40904273	26	2.0	26	85	0	70	9	28	28	33	1.88
40904415--40904469	6	8.8	6	79	16	51	0	18	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40904401--40904469	7	10.6	7	75	20	51	1	14	1	82	0.81
40904423--40904467	11	4.3	11	86	11	67	0	20	0	80	0.72
40904413--40904469	20	3.2	18	83	13	73	0	17	0	82	0.67
40904424--40904481	27	2.1	27	81	6	64	0	24	1	74	0.92
40904586--40904625	20	2.0	21	85	5	55	0	30	0	70	0.88
40904582--40904637	25	2.3	24	79	11	60	0	28	0	71	0.86
40905148--40905246	29	3.4	30	83	8	98	42	2	23	32	1.65
40905173--40905246	30	2.5	31	86	8	109	45	1	18	33	1.58
40905562--40906699	150	7.4	150	79	8	1225	32	21	20	25	1.97
40905562--40905879	75	4.2	75	95	1	566	32	22	20	24	1.98
40905849--40905909	29	2.1	29	93	0	104	27	31	27	13	1.94
40905854--40905916	29	2.2	29	91	0	99	23	38	25	12	1.90
40905774--40905983	104	2.0	104	93	1	359	31	24	21	21	1.98
40905699--40906058	179	2.0	179	96	1	659	31	23	21	23	1.98
40905878--40906699	75	11.0	75	96	0	1454	32	21	20	25	1.97
40915775--40915819	13	3.3	13	80	20	56	2	15	0	82	0.77
40915774--40915828	26	2.1	26	83	6	67	1	21	0	76	0.88
40916490--40916599	30	3.7	30	86	7	152	41	3	22	31	1.71
40918355--40918418	28	2.4	27	75	12	69	60	3	3	32	1.28
40923291--40923318	13	2.2	13	100	0	56	28	39	0	32	1.57
40931463--40931491	12	2.3	13	94	5	51	31	13	0	55	1.39
40931525--40931573	13	3.9	12	77	15	55	36	2	2	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40931526--40931573	17	2.6	19	83	6	64	35	2	2	60	1.20
40934688--40934731	17	2.6	17	82	7	54	54	0	2	43	1.12
40934685--40934731	12	4.1	12	74	20	55	51	0	2	46	1.13
40934773--40934822	20	2.7	19	80	20	61	54	2	2	42	1.23
40940191--40940215	13	1.9	13	100	0	50	36	0	16	48	1.46
40943744--40943929	50	3.7	50	81	2	196	22	26	22	28	1.99
40944270--40944327	30	1.9	30	86	6	82	32	24	5	37	1.77
40952365--40952413	18	2.7	18	96	0	89	65	0	0	34	0.93
40964510--40964545	16	2.2	16	90	0	54	63	0	36	0	0.94
40965595--40965661	23	2.9	23	93	4	109	23	19	17	38	1.93
40971867--40972168	140	2.1	141	78	1	311	54	11	10	23	1.67
40972589--40972633	22	2.1	22	84	8	58	28	0	8	62	1.25
40980777--40980834	30	1.9	30	85	0	80	41	1	24	32	1.65
40981046--40981077	13	2.5	13	94	0	55	31	0	12	56	1.37
40981172--40981413	50	4.7	50	86	4	297	26	24	29	19	1.99
40981172--40981421	100	2.4	103	88	6	364	26	24	29	20	1.99
40990002--40990061	30	2.0	30	87	3	86	43	3	23	30	1.70
40990271--40990302	13	2.5	13	94	0	55	31	0	12	56	1.37
40990397--40990638	50	4.7	50	85	4	288	26	23	29	20	1.99
40990397--40990646	100	2.4	103	87	6	355	26	23	29	21	1.99
40993703--40993749	21	2.2	22	85	14	71	34	4	17	44	1.68
41002625--41002745	51	2.4	51	90	2	181	22	18	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41004242--41004356	23	4.9	24	73	10	94	31	7	3	57	1.44
41004314--41004374	24	2.7	22	81	18	72	36	6	1	55	1.36
41004314--41004431	59	2.0	59	82	9	143	34	7	4	53	1.49
41004423--41004481	24	2.4	23	77	22	59	35	1	3	59	1.24
41015068--41015160	25	3.8	24	67	4	60	33	18	29	19	1.95
41015062--41015166	25	4.3	24	65	9	59	36	17	26	20	1.94
41015192--41015257	23	2.8	23	75	13	62	34	19	24	21	1.96
41015250--41015309	26	2.3	26	80	5	68	38	23	20	18	1.93
41015603--41015654	22	2.4	22	96	0	95	51	21	1	25	1.57
41015789--41015827	5	7.6	5	82	5	51	41	17	0	41	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161