genome.fa.s22.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  135  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42041290--42041370	38	2.1	38	86	9	110	33	8	19	38	1.83
42042486--42042541	13	4.3	13	82	10	62	51	0	5	42	1.24
42042486--42042541	26	2.2	26	84	12	71	51	0	5	42	1.24
42045180--42045210	7	4.4	7	100	0	62	41	0	12	45	1.42
42048323--42048358	11	3.3	11	92	7	56	77	0	19	2	0.88
42048424--42048463	6	6.7	6	85	0	53	30	15	30	25	1.95
42048424--42048463	18	2.2	18	95	0	71	30	15	30	25	1.95
42060774--42060804	16	1.9	16	100	0	62	32	51	9	6	1.60
42062375--42062406	13	2.5	13	94	0	55	56	12	0	31	1.37
42062618--42062675	30	1.9	30	89	0	89	29	24	5	41	1.76
42069594--42069884	50	5.8	50	91	0	456	19	30	23	25	1.98
42070212--42070267	29	1.9	29	85	7	78	26	23	8	41	1.84
42078478--42078638	50	3.2	50	77	0	169	25	18	21	34	1.96
42078557--42078723	85	2.0	85	93	0	289	23	19	25	31	1.98
42078967--42079067	45	2.3	45	83	8	118	28	21	20	28	1.98
42079517--42080029	44	11.7	44	85	3	701	21	28	20	30	1.98
42079517--42080029	88	5.8	88	97	0	904	21	28	20	30	1.98
42087733--42087757	9	2.8	9	100	0	50	92	0	8	0	0.40
42088016--42088057	21	2.0	22	86	13	61	14	21	47	16	1.82
42094221--42094295	27	2.8	27	73	4	71	29	22	29	18	1.98
42094807--42094886	27	3.0	27	83	7	108	37	18	20	23	1.94
42095773--42095829	17	3.1	17	70	29	53	35	19	12	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42104075--42104116	21	2.0	20	86	4	57	26	0	2	71	0.98
42104099--42104143	23	2.0	23	86	0	63	42	0	2	55	1.12
42104111--42104164	26	2.2	23	83	9	63	46	1	0	51	1.11
42104148--42104209	20	3.3	19	80	8	65	38	3	4	53	1.39
42104146--42104199	20	2.8	20	80	8	67	44	3	3	48	1.38
42104375--42104404	9	3.3	9	90	0	51	43	20	10	26	1.83
42105505--42105677	43	4.1	42	80	5	179	29	15	23	31	1.95
42105505--42105677	85	2.0	84	85	1	229	29	15	23	31	1.95
42108641--42108836	99	2.0	98	94	0	329	58	3	9	28	1.45
42117134--42117167	18	1.9	18	88	5	52	50	0	0	50	1.00
42119568--42119605	2	19.0	2	100	0	76	50	0	50	0	1.00
42119956--42120064	41	2.7	41	91	0	173	18	22	28	31	1.97
42120407--42120484	22	3.6	21	79	8	77	26	1	24	47	1.60
42120431--42120519	7	12.6	7	73	2	61	22	1	29	47	1.59
42120387--42120520	21	6.3	21	73	8	74	25	1	27	45	1.62
42120534--42120597	21	3.0	21	76	19	69	21	0	42	35	1.54
42120705--42120743	17	2.4	17	95	4	71	53	0	0	46	1.00
42120930--42120970	21	1.9	22	85	5	57	21	0	39	39	1.54
42120951--42120979	8	3.8	8	90	9	51	13	0	48	37	1.43
42121299--42121366	36	1.9	35	82	8	84	60	5	0	33	1.21
42121380--42121464	39	2.2	39	86	0	116	38	18	21	21	1.93
42122214--42122295	38	2.2	38	86	4	112	20	15	8	54	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42126457--42126840	43	8.9	43	86	0	525	22	18	30	28	1.97
42126867--42126909	22	2.0	21	86	4	59	44	25	18	11	1.84
42130909--42131101	51	3.8	51	78	7	214	30	26	18	24	1.98
42130916--42131100	101	1.8	101	90	3	300	30	26	18	24	1.98
42134276--42134304	2	15.0	2	92	7	51	48	0	0	51	1.00
42137114--42137218	39	2.7	39	88	2	149	18	23	29	28	1.98
42138527--42138766	71	3.3	72	75	10	191	31	23	17	28	1.97
42140266--42140327	21	3.0	21	63	23	51	9	32	9	48	1.69
42143236--42143302	34	1.9	35	90	3	109	46	10	8	34	1.70
42143275--42143319	14	3.1	15	81	9	58	37	15	11	35	1.83
42151779--42151824	16	2.9	16	80	6	58	52	0	0	47	1.00
42156280--42156428	42	3.5	42	79	3	156	43	16	22	16	1.87
42156280--42156428	21	7.1	21	68	3	102	43	16	22	16	1.87
42162105--42162145	21	2.0	21	85	9	57	41	0	7	51	1.30
42162147--42162211	29	2.2	29	84	10	80	53	0	3	43	1.16
42163512--42163545	7	4.9	7	100	0	68	55	0	29	14	1.40
42169602--42169659	22	2.6	22	81	7	64	41	17	5	36	1.72
42170181--42170654	45	10.8	45	72	14	294	25	23	21	29	1.99
42170358--42170650	44	6.8	44	72	11	221	26	22	20	30	1.99
42170318--42170602	84	3.3	84	73	14	285	27	23	20	29	1.98
42170232--42170654	173	2.4	174	82	6	500	25	23	21	29	1.99
42171015--42171136	44	2.8	44	82	9	160	27	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42171136--42171713	88	6.6	88	88	0	823	21	23	27	27	1.99
42171178--42171400	44	5.1	43	65	8	117	24	24	23	27	2.00
42171306--42171708	44	9.2	44	62	7	154	21	23	28	27	1.99
42173039--42173071	14	2.3	15	89	5	50	27	36	12	24	1.91
42173893--42173953	26	2.3	26	83	5	70	57	4	14	22	1.57
42178541--42178594	19	2.8	19	88	0	81	37	16	7	38	1.77
42178518--42178594	38	1.9	40	87	10	113	38	16	5	38	1.71
42179482--42179853	185	2.0	185	98	0	717	39	18	12	30	1.87
42183211--42183240	16	1.9	15	93	6	51	60	13	3	23	1.48
42183939--42183984	23	2.0	23	100	0	92	39	13	8	39	1.75
42194709--42194777	30	2.3	30	92	0	111	34	26	0	39	1.57
42200033--42200166	67	2.0	69	86	4	191	44	13	1	41	1.53
42200036--42200143	33	3.2	33	85	2	153	46	13	0	39	1.44
42200193--42200273	42	1.9	42	92	5	137	48	24	0	27	1.52
42202679--42202737	24	2.6	23	81	5	66	38	5	5	50	1.46
42202969--42202993	4	6.2	4	100	0	50	24	0	0	76	0.80
42203152--42203474	109	3.0	109	87	2	463	30	16	18	34	1.93
42207267--42207364	23	4.3	23	89	2	153	31	25	21	21	1.98
42207274--42207362	45	2.0	45	93	0	151	31	25	22	20	1.98
42214640--42214737	23	4.3	23	90	2	162	31	26	21	20	1.98
42214647--42214735	45	2.0	45	95	0	160	31	26	22	19	1.97
42218750--42218815	13	4.9	13	77	18	57	80	0	18	1	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42218751--42218816	17	3.7	17	83	6	69	80	0	18	1	0.79
42218750--42218812	23	2.6	25	85	14	87	79	0	19	1	0.82
42218771--42218817	18	2.7	18	84	12	62	80	0	14	4	0.85
42218748--42218809	7	8.6	7	74	11	54	80	0	17	1	0.79
42220188--42220400	44	4.8	44	70	15	143	30	20	23	25	1.98
42220056--42220417	132	2.8	132	91	1	557	30	20	22	26	1.99
42220406--42221016	50	12.3	50	69	1	337	30	22	21	25	1.99
42220406--42221018	100	6.2	100	87	2	813	30	22	21	25	1.99
42223179--42223605	109	3.9	109	90	0	635	31	16	18	33	1.93
42244048--42244080	16	2.1	16	100	0	66	15	24	30	30	1.95
42259101--42259224	64	1.9	64	80	3	142	33	20	20	25	1.97
42261523--42261554	12	2.7	12	100	0	64	6	37	0	56	1.25
42277993--42278122	64	2.0	64	80	0	143	33	20	20	26	1.97
42283995--42284035	17	2.4	18	84	15	52	39	0	0	60	0.96
42288305--42288337	17	2.0	17	88	5	50	54	30	0	15	1.41
42289019--42289134	35	3.2	36	79	9	137	35	22	20	21	1.96
42292225--42292265	19	2.2	19	86	0	55	36	2	4	56	1.34
42295400--42295428	3	9.7	3	100	0	58	34	0	31	34	1.58
42295818--42295968	80	1.9	80	85	0	212	31	7	19	40	1.81
42296838--42296871	18	1.9	17	88	5	50	85	0	11	2	0.71
42298223--42298256	16	2.1	16	88	0	50	50	20	0	29	1.49
42305413--42305443	4	7.5	4	96	3	53	25	3	45	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42312127--42312171	24	1.9	23	86	4	63	60	8	13	17	1.58
42312788--42312819	13	2.5	13	100	0	64	46	0	0	53	1.00
42315918--42315951	16	2.1	16	94	0	59	47	17	2	32	1.63
42324391--42324519	43	3.0	43	81	8	163	30	30	18	20	1.97
42327383--42328147	92	8.3	92	92	0	1235	33	7	16	42	1.75
42327448--42328143	31	22.7	31	72	7	213	33	7	16	42	1.75
42328290--42328406	43	2.8	41	81	2	135	27	18	29	23	1.98
42330746--42330782	15	2.5	15	100	0	74	5	13	13	67	1.39
42334740--42334838	23	4.3	23	85	0	135	28	25	21	25	1.99
42334740--42334837	46	2.1	46	90	0	151	28	25	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161