genome.fa.s22.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  126  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39824096--39824392	120	2.5	121	91	4	469	50	5	2	41	1.39
39824217--39824268	15	3.6	15	80	12	56	53	1	0	44	1.11
39824194--39824284	44	2.1	43	81	6	103	53	3	2	40	1.29
39824136--39824319	59	3.1	59	66	20	155	48	7	2	41	1.42
39824353--39824391	17	2.5	15	80	15	51	51	0	5	43	1.24
39824358--39824391	17	2.0	17	94	0	59	50	0	5	44	1.26
39824424--39824618	93	2.1	92	88	4	286	47	4	4	44	1.41
39826180--39826247	34	2.0	34	100	0	136	29	23	17	29	1.97
39829540--39829580	20	2.0	20	90	4	64	41	46	2	9	1.50
39832974--39833005	7	4.6	7	100	0	64	0	12	31	56	1.37
39833195--39833229	8	4.4	8	88	0	52	25	11	22	40	1.88
39833196--39833229	12	2.8	12	86	0	50	26	11	23	38	1.89
39837737--39837786	18	2.6	19	78	15	59	44	0	0	56	0.99
39838093--39838137	21	2.1	21	100	0	90	57	8	0	33	1.30
39843949--39843994	20	2.3	21	85	7	60	41	0	0	58	0.98
39845872--39845923	16	3.2	16	91	0	77	28	0	34	36	1.58
39845904--39845998	45	2.1	44	86	1	127	34	5	26	33	1.79
39846160--39846194	18	2.0	17	88	5	52	54	0	0	45	0.99
39846118--39846190	27	2.7	27	76	8	76	52	2	0	45	1.15
39846079--39846350	144	1.9	147	94	3	487	46	3	2	47	1.34
39846304--39846338	18	2.0	17	88	5	52	54	0	0	45	0.99
39853806--39853841	17	2.2	16	90	5	54	33	2	16	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39855411--39855453	3	14.3	3	100	0	86	32	67	0	0	0.91
39861278--39861320	22	2.0	22	86	4	61	41	0	4	53	1.21
39862870--39862941	30	2.4	30	90	4	110	51	19	1	27	1.55
39866330--39866704	127	3.0	126	86	3	486	37	17	16	28	1.92
39869035--39870124	44	23.9	44	72	13	563	26	25	19	28	1.98
39869159--39869979	89	9.1	88	73	12	488	26	25	19	28	1.99
39869035--39869789	228	3.3	228	87	2	1021	26	25	19	28	1.99
39869035--39869745	229	3.1	229	88	2	1043	26	25	18	28	1.98
39869209--39870127	133	6.7	133	77	9	741	26	25	19	28	1.98
39877410--39877473	31	2.1	31	96	0	119	18	29	12	39	1.88
39879192--39879236	24	1.9	24	86	4	65	15	28	15	40	1.88
39879391--39879430	19	2.0	20	85	4	55	57	5	17	20	1.58
39888671--39889122	127	3.6	125	83	6	500	36	19	16	27	1.93
39888770--39889129	127	2.8	127	88	2	519	36	18	16	28	1.92
39892813--39892871	25	2.5	24	84	13	77	37	11	5	45	1.63
39894849--39894894	23	2.1	21	88	8	65	17	43	13	26	1.85
39895944--39896227	24	11.6	26	80	12	86	32	2	2	63	1.21
39895799--39896101	143	2.2	140	89	2	446	30	4	4	59	1.39
39896034--39896240	9	23.6	8	91	4	175	31	0	0	66	1.02
39896075--39896244	3	56.7	3	100	0	340	33	0	0	66	0.92
39896075--39896274	9	22.0	9	93	4	177	31	0	2	66	1.07
39899819--39899978	24	6.6	24	77	11	148	21	13	30	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39899819--39899984	73	2.3	72	80	7	185	22	13	29	34	1.92
39904206--39904242	19	1.9	19	94	0	65	35	0	18	45	1.50
39904454--39904793	41	8.3	41	90	0	536	30	19	27	23	1.98
39904454--39904787	82	4.1	82	99	0	659	29	19	27	23	1.98
39910268--39910359	24	3.8	24	88	0	139	20	13	31	34	1.91
39910275--39910403	48	2.7	48	82	8	129	21	11	31	34	1.89
39921259--39921433	77	2.3	77	83	1	217	26	16	19	37	1.92
39923450--39923583	3	44.7	3	100	0	268	33	0	0	66	0.92
39923548--39923616	25	2.9	25	82	16	69	33	0	5	60	1.20
39923602--39923634	16	2.1	16	88	11	50	36	3	6	54	1.41
39925042--39925152	55	2.0	55	98	0	213	29	9	9	51	1.66
39925132--39925192	3	20.3	3	80	9	54	27	1	6	63	1.28
39925315--39925350	3	12.0	3	100	0	72	33	0	0	66	0.92
39930655--39930697	7	5.7	7	86	10	59	69	2	2	25	1.12
39935078--39935566	132	3.7	130	77	4	383	28	19	18	34	1.95
39936755--39936788	13	2.5	14	85	4	52	23	8	5	61	1.47
39936701--39937780	89	12.4	89	90	5	1604	27	16	18	37	1.93
39937446--39937598	78	2.0	75	88	5	227	28	16	16	39	1.90
39937362--39937687	164	2.0	162	87	4	476	27	17	17	37	1.93
39937624--39937656	14	2.3	15	90	10	52	12	21	6	60	1.53
39937520--39937868	89	3.9	87	82	5	353	26	17	19	36	1.94
39939651--39939700	25	2.0	25	92	0	82	38	2	4	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39939666--39939712	19	2.4	20	78	3	60	36	4	2	57	1.30
39939960--39940028	23	3.0	23	74	19	63	34	2	4	57	1.33
39951131--39951166	18	2.0	18	100	0	72	38	0	50	11	1.38
39952316--39953005	87	8.0	81	87	8	694	26	17	19	36	1.94
39952185--39952548	88	4.1	88	82	7	466	26	17	19	36	1.94
39952455--39952700	86	3.1	75	84	9	271	28	18	19	34	1.95
39952528--39953005	87	5.5	87	95	1	778	26	17	17	37	1.93
39953169--39953201	14	2.3	15	90	10	52	12	21	6	60	1.53
39952811--39953206	217	1.8	218	90	1	643	28	17	17	36	1.93
39953029--39954849	88	20.4	87	86	5	2288	28	17	18	36	1.93
39953029--39954849	178	10.2	175	90	4	2273	28	17	18	36	1.93
39953347--39953379	14	2.3	15	90	10	52	12	21	6	60	1.53
39953789--39953821	14	2.3	15	90	10	52	12	21	6	60	1.53
39953967--39953999	14	2.3	15	90	10	52	12	21	6	60	1.53
39954242--39954274	14	2.3	15	90	10	52	12	21	6	60	1.53
39954333--39954365	14	2.3	15	90	10	52	12	21	6	60	1.53
39954514--39954546	14	2.3	15	90	10	52	12	21	6	60	1.53
39954693--39954725	14	2.3	15	90	10	52	12	21	6	60	1.53
39954041--39954937	89	10.1	87	85	5	1061	27	17	18	36	1.93
39956716--39956771	16	3.4	16	82	9	69	37	0	10	51	1.37
39958550--39958577	6	4.7	6	100	0	56	0	0	14	85	0.59
39963435--39963484	22	2.3	21	83	12	66	14	8	0	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39968991--39969058	22	3.0	21	83	10	82	22	20	20	36	1.95
39969001--39969155	23	6.9	23	75	14	121	25	22	17	34	1.95
39973474--39973537	31	2.1	31	88	8	96	59	10	4	25	1.50
39980041--39980102	29	2.1	31	81	6	74	19	6	12	61	1.53
39983036--39983080	23	2.0	23	86	8	65	46	6	6	40	1.56
39989758--39989857	50	2.0	50	96	0	182	38	20	13	29	1.90
39989896--39989950	28	2.0	28	92	0	92	32	5	7	54	1.51
39993875--39993906	16	1.9	17	93	6	57	37	21	0	40	1.54
39994065--39994235	43	4.0	43	78	13	192	32	29	16	21	1.96
39994067--39994224	84	1.9	84	84	7	214	31	29	18	21	1.97
40006567--40006958	196	2.0	196	97	0	748	33	21	8	35	1.85
40007457--40007563	54	2.0	54	98	0	205	39	21	6	32	1.79
40011297--40011328	16	1.9	17	93	6	57	37	21	0	40	1.54
40011487--40011657	43	4.0	43	80	13	201	31	29	17	21	1.96
40011489--40011646	84	1.9	84	85	7	223	30	29	18	21	1.97
40012005--40012497	247	2.0	247	97	0	923	33	22	14	30	1.94
40022689--40022995	40	7.7	40	96	0	533	29	20	28	21	1.98
40033437--40033498	24	2.4	26	75	20	67	51	0	6	41	1.27
40033885--40034469	89	6.6	89	91	0	839	26	23	19	30	1.98
40034690--40034787	44	2.2	46	85	8	141	30	13	27	28	1.94
40036325--40036365	21	2.0	21	95	0	73	9	0	9	80	0.91
40040376--40040431	25	2.2	25	83	0	67	57	8	5	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40040376--40040428	20	2.7	20	84	0	70	56	7	5	30	1.50
40043934--40044201	82	3.2	81	89	3	383	47	10	10	31	1.73
40043871--40044257	82	4.6	81	81	8	375	44	11	12	30	1.78
40044886--40044929	20	2.2	20	84	8	54	54	6	4	34	1.47
40046444--40046556	27	4.2	27	85	2	147	19	16	20	43	1.88
40046430--40046546	54	2.2	54	84	3	146	22	14	22	41	1.90
40046444--40046556	54	2.1	54	88	0	163	19	16	20	43	1.88
40056454--40056539	40	2.3	36	80	13	93	32	5	9	52	1.57
40060652--40060705	28	2.0	27	82	17	67	51	1	11	35	1.48
40060753--40060788	18	2.1	16	90	10	54	61	0	5	33	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161