genome.fa.s22.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  92  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29220205--29220735	265	2.0	265	99	0	1053	29	12	19	38	1.88
29223907--29223967	20	3.1	19	75	17	61	9	29	22	37	1.87
29224992--29225046	28	2.0	28	92	0	92	47	25	3	23	1.68
29230922--29230973	17	3.1	17	73	13	54	59	1	0	38	1.08
29231631--29231657	3	9.0	3	100	0	54	33	0	0	66	0.92
29231809--29231839	12	2.6	12	89	0	53	83	6	0	9	0.79
29235180--29235224	16	2.8	16	86	3	63	57	2	0	40	1.11
29235180--29235217	8	4.6	8	90	3	58	55	2	0	42	1.14
29240678--29240721	18	2.4	18	92	0	70	34	29	2	34	1.70
29242185--29242230	22	2.1	22	88	8	67	41	13	4	41	1.63
29251476--29251523	24	2.1	22	88	7	69	58	0	2	39	1.10
29251682--29251990	43	7.3	43	88	4	430	27	33	16	22	1.96
29252267--29252364	45	2.2	44	87	5	144	44	9	12	33	1.73
29253671--29254900	615	2.0	615	99	0	2424	37	17	14	30	1.89
29254483--29256164	841	2.0	841	99	0	3346	38	15	16	30	1.89
29256604--29256654	7	7.1	7	78	10	50	52	0	43	3	1.19
29257630--29257662	15	2.3	15	89	5	50	36	30	0	33	1.58
29258058--29258319	41	6.1	41	82	11	299	28	29	20	21	1.98
29258140--29258319	83	2.2	82	91	1	288	28	30	20	20	1.98
29263018--29263070	19	2.7	20	77	14	56	56	3	7	32	1.45
29263487--29263523	19	1.9	19	88	0	56	32	0	0	67	0.91
29264075--29264319	120	2.0	121	97	0	465	54	9	11	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29270623--29270656	15	2.2	16	89	5	52	38	8	14	38	1.78
29273213--29273241	3	9.7	3	100	0	58	68	0	0	31	0.89
29283209--29283303	48	2.0	48	95	0	172	44	10	27	17	1.82
29283670--29283708	13	2.9	13	88	7	60	43	5	12	38	1.65
29283672--29283746	29	2.6	27	76	12	69	46	5	10	37	1.61
29283969--29284160	35	5.7	33	83	5	217	20	21	16	41	1.91
29283964--29284160	67	2.9	65	77	10	216	20	21	16	42	1.89
29286501--29286562	14	4.2	14	72	11	52	20	6	0	72	1.06
29286520--29286558	3	12.7	3	89	5	60	30	2	0	66	1.05
29286519--29286559	19	2.2	19	95	0	73	29	2	0	68	1.03
29286523--29286555	16	2.1	16	94	0	57	30	3	0	66	1.06
29290966--29291223	45	5.7	46	80	8	257	40	17	22	20	1.91
29290963--29291223	135	1.9	135	81	9	318	40	17	21	19	1.91
29300986--29301145	10	16.3	10	73	17	90	70	0	30	0	0.88
29300994--29301178	42	4.5	42	80	11	195	69	0	30	0	0.93
29300989--29301139	42	3.4	45	85	11	197	70	0	29	0	0.88
29300977--29301139	47	3.5	47	77	16	171	68	0	31	0	0.90
29301503--29301957	157	2.9	153	73	14	440	52	7	10	29	1.63
29301974--29302016	21	2.0	21	95	0	77	53	4	2	39	1.34
29302111--29302157	13	3.8	13	83	5	62	61	4	4	29	1.34
29307390--29307467	39	2.0	40	82	12	99	51	10	5	33	1.58
29307666--29307702	10	3.6	10	88	3	56	2	27	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29308092--29308129	6	6.5	6	93	6	69	68	0	0	31	0.90
29308134--29308222	46	2.0	45	84	10	119	43	2	5	48	1.39
29308138--29308238	46	2.2	45	79	12	107	42	1	4	50	1.35
29309152--29309190	9	4.3	9	93	6	62	79	0	0	20	0.73
29309152--29309192	17	2.3	18	91	4	66	75	0	0	24	0.80
29311082--29311113	15	2.0	17	88	11	50	71	0	0	28	0.86
29311215--29311260	16	2.8	17	87	6	69	73	0	2	23	0.94
29311216--29311260	8	5.5	8	78	5	54	73	0	2	24	0.95
29312290--29312334	19	2.4	18	78	7	54	31	8	0	60	1.28
29319954--29320079	35	3.6	35	88	2	173	15	7	32	43	1.76
29324572--29324632	20	3.0	20	78	7	70	62	0	0	37	0.96
29329392--29329420	12	2.4	12	100	0	58	31	0	13	55	1.39
29335185--29335271	43	2.0	43	90	0	138	25	22	2	49	1.62
29344095--29344313	37	5.9	37	85	4	264	28	15	15	40	1.87
29346121--29346191	36	1.9	38	91	5	119	35	0	0	64	0.94
29346156--29346208	26	2.0	26	85	0	70	30	0	5	64	1.17
29349003--29349220	100	2.2	101	86	1	287	36	11	20	30	1.89
29355590--29355619	5	6.0	5	100	0	60	80	0	0	20	0.72
29355606--29355775	56	3.0	56	92	0	268	45	11	12	30	1.77
29361979--29362135	84	1.9	84	83	0	206	43	10	14	31	1.79
29362000--29362274	140	2.0	139	88	2	408	45	10	11	32	1.75
29362134--29362443	83	3.7	84	82	4	340	44	11	10	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29362134--29362531	87	4.7	87	81	6	349	43	11	10	34	1.75
29362134--29362439	167	1.8	167	84	6	420	44	11	10	33	1.75
29362503--29362800	79	3.7	78	79	9	267	41	11	14	32	1.81
29362617--29362783	88	2.0	83	84	5	217	42	11	14	31	1.81
29364235--29364512	139	2.0	139	100	0	556	30	5	24	39	1.78
29365197--29365260	28	2.3	27	84	5	83	34	0	3	62	1.11
29365880--29366005	62	2.0	62	100	0	252	30	6	23	39	1.80
29366610--29366697	25	3.5	26	79	10	96	20	23	21	34	1.97
29368504--29368551	25	1.9	25	82	0	60	58	6	8	27	1.51
29370177--29370235	31	2.0	30	86	6	84	42	10	10	37	1.73
29370172--29370238	31	2.3	27	80	14	80	40	8	10	40	1.71
29380501--29380542	17	2.4	18	80	4	50	11	14	2	71	1.24
29381131--29381165	16	2.1	17	89	5	54	34	5	5	54	1.48
29396237--29396274	20	1.9	20	84	10	51	42	2	0	55	1.14
29397289--29397340	27	2.0	27	84	3	70	75	11	0	13	1.06
29412077--29412127	20	2.5	22	75	18	56	52	1	0	45	1.12
29413582--29413615	16	2.1	16	88	0	50	23	32	5	38	1.79
29418200--29418442	45	5.4	45	85	2	299	18	22	16	43	1.88
29424384--29424823	49	9.2	48	95	2	721	32	8	30	28	1.87
29433915--29438154	43	96.3	41	66	17	1146	21	21	23	34	1.97
29434214--29437961	89	42.3	89	94	2	6504	20	21	23	34	1.97
29438211--29439020	50	16.3	50	70	4	526	26	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29438261--29439038	199	3.9	199	85	3	994	26	22	20	30	1.98
29438211--29439038	100	8.3	100	84	2	970	26	22	20	30	1.98
29438804--29439050	50	4.9	50	72	0	143	27	21	19	31	1.98
29440538--29440592	7	7.3	7	84	11	65	0	1	18	80	0.81
29440539--29440590	8	6.6	8	80	10	54	0	1	15	82	0.75
29440541--29440588	22	2.2	22	81	7	53	0	2	16	81	0.79
29448095--29448160	33	2.0	33	96	0	123	22	12	46	18	1.81
29448851--29449038	61	3.1	60	70	14	188	43	2	4	50	1.36
29448807--29449038	120	1.9	120	97	0	437	43	2	3	50	1.32
29448828--29449011	59	3.1	59	69	14	187	41	1	4	52	1.31
29448906--29449158	102	2.5	100	87	4	355	42	1	3	52	1.26
29448855--29449039	59	3.1	58	68	25	159	42	2	4	50	1.36
29449086--29449138	18	3.0	17	91	5	79	39	1	1	56	1.21
29448924--29449066	26	5.6	26	69	22	97	43	2	2	51	1.28
29449298--29449390	46	2.1	44	87	4	132	34	27	7	30	1.85
29478328--29478380	23	2.4	22	76	20	56	69	1	18	9	1.25
29486393--29486491	47	2.1	47	98	0	189	30	12	25	32	1.92
29486943--29486999	30	1.9	30	82	7	71	40	17	10	31	1.84
29487033--29487089	30	1.9	30	82	7	71	40	17	10	31	1.84
29487123--29487179	30	1.9	30	82	7	71	40	17	10	31	1.84
29487213--29487269	30	1.9	30	82	7	71	40	17	10	31	1.84
29486941--29487319	90	4.2	90	100	0	758	36	17	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29492196--29492279	42	2.0	42	95	0	150	45	9	15	29	1.78
29492821--29492854	15	2.3	15	100	0	68	55	0	5	38	1.24
29495420--29497302	943	2.0	940	97	0	3532	38	12	18	30	1.87
29511794--29511827	16	2.2	15	89	5	50	44	0	0	55	0.99
29514250--29514288	19	2.1	19	100	0	78	41	5	5	48	1.47
29514550--29514677	42	3.0	43	84	6	172	14	21	16	47	1.82
29514574--29514674	21	4.8	21	68	4	78	14	20	15	48	1.81
29516200--29516248	25	2.1	22	81	11	53	55	6	12	26	1.60
29521691--29521816	43	2.9	43	80	12	141	31	29	18	20	1.96
29523979--29524023	21	2.1	21	95	0	81	33	15	6	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161