genome.fa.s22.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  104  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32919210--32919480	136	2.0	136	92	0	452	25	22	21	30	1.99
32922040--32922146	38	2.8	38	79	0	115	22	20	24	32	1.98
32936907--32936946	17	2.4	17	91	0	62	47	0	12	40	1.41
32937007--32937034	13	2.2	13	100	0	56	60	0	0	39	0.97
32942711--32942888	53	3.4	53	80	6	209	38	14	23	24	1.91
32942711--32942922	53	4.0	53	81	0	208	37	13	23	25	1.91
32943041--32943200	61	2.6	61	81	3	187	31	14	26	26	1.95
32948323--32948741	207	2.0	208	93	1	725	34	18	15	31	1.92
32950344--32950372	14	2.1	14	100	0	58	13	13	0	72	1.13
32952195--32952618	44	9.7	44	72	7	238	25	24	19	30	1.98
32952189--32952721	217	2.5	216	92	0	868	26	23	19	30	1.98
32952708--32953220	128	4.0	128	93	0	855	25	24	18	30	1.98
32963887--32963984	23	4.3	23	82	2	117	41	20	16	21	1.90
32974919--32974976	6	9.2	6	87	10	64	65	0	18	15	1.27
32974925--32974975	6	7.9	7	93	6	74	62	0	21	15	1.32
32975012--32975063	26	2.0	26	100	0	104	23	3	23	50	1.66
32975152--32975204	25	2.1	26	82	3	63	37	7	20	33	1.81
32990162--32990384	40	5.6	40	82	5	238	24	26	22	26	2.00
32990154--32990384	120	1.9	120	82	5	288	24	26	22	25	2.00
32990690--32990768	29	2.7	29	86	5	106	27	32	15	24	1.95
32990755--32990852	43	2.3	43	96	0	178	31	33	11	23	1.90
32995302--32995414	60	1.9	60	98	0	217	26	27	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33006742--33007164	112	3.8	112	92	1	679	34	21	15	28	1.94
33006742--33007164	222	1.9	224	90	0	679	34	21	15	28	1.94
33007646--33007702	30	1.9	29	85	3	78	73	3	5	17	1.16
33009298--33009397	43	2.3	43	91	1	155	23	20	23	34	1.97
33009327--33009572	44	5.7	44	73	6	191	24	21	22	31	1.98
33009594--33009960	86	4.3	86	93	1	621	23	24	24	28	2.00
33009598--33009960	170	2.1	171	92	1	611	23	24	24	28	2.00
33011211--33011255	7	6.9	7	82	12	60	13	17	0	68	1.20
33011214--33011260	13	3.8	13	83	10	55	10	17	0	72	1.12
33011181--33011363	97	1.9	95	80	9	210	8	24	9	57	1.58
33015440--33015768	110	3.0	110	92	0	541	32	20	16	31	1.94
33016243--33016300	29	2.0	29	86	6	82	70	1	8	18	1.21
33019432--33019478	13	3.5	14	78	16	55	34	12	2	51	1.52
33026396--33026439	18	2.4	18	80	0	52	47	20	4	27	1.69
33026396--33026477	36	2.3	36	82	0	92	45	19	4	30	1.71
33026704--33026842	35	4.0	35	77	7	131	47	15	3	33	1.62
33026709--33026842	71	1.9	68	80	11	155	46	14	3	35	1.63
33031023--33031085	25	2.5	25	92	0	108	22	9	19	49	1.76
33032152--33032193	16	2.6	16	76	0	57	42	4	23	28	1.74
33032173--33032262	44	2.1	43	89	8	139	33	4	25	36	1.76
33036557--33036613	2	29.0	2	76	3	53	52	0	3	43	1.18
33036557--33036613	12	4.3	12	80	20	69	52	0	3	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33036564--33036618	27	2.0	27	89	7	83	50	0	5	43	1.25
33036525--33036643	41	3.1	39	74	20	131	47	1	5	46	1.34
33036546--33036643	27	3.7	27	75	13	78	47	2	5	44	1.36
33036622--33036661	19	2.1	19	95	0	71	45	5	5	45	1.47
33040250--33040299	17	3.0	16	82	5	55	38	14	20	28	1.91
33048225--33048292	31	2.3	31	80	10	79	38	10	10	41	1.73
33048933--33048998	22	3.0	22	95	0	114	28	30	0	40	1.57
33048956--33049067	52	2.2	52	85	1	145	29	23	0	47	1.52
33050214--33050238	7	3.6	7	100	0	50	28	0	12	60	1.32
33051412--33051485	37	2.0	37	86	5	105	43	22	4	29	1.72
33051448--33051554	44	2.4	44	82	6	126	46	21	2	28	1.65
33051527--33051583	29	2.0	29	92	0	96	43	26	0	29	1.55
33051538--33052092	50	10.9	50	82	7	663	45	27	1	25	1.62
33051718--33051759	21	2.0	20	86	4	57	45	28	2	23	1.66
33051733--33051867	64	2.1	64	92	0	225	46	28	1	23	1.61
33051783--33051817	14	2.5	14	100	0	70	48	25	0	25	1.51
33051683--33051917	114	2.1	114	94	0	407	45	28	2	24	1.65
33051598--33052017	214	2.0	214	93	0	725	45	27	1	25	1.63
33051832--33051873	21	2.0	21	86	4	59	45	28	2	23	1.66
33051982--33052067	21	4.1	20	78	12	91	46	25	1	26	1.60
33052052--33052205	29	5.8	29	73	18	106	46	24	1	27	1.61
33051818--33052193	194	1.9	189	83	10	483	46	25	1	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33052095--33052166	22	3.3	22	75	13	76	47	25	1	26	1.60
33052135--33052205	29	2.5	29	93	2	117	45	26	1	26	1.62
33052377--33052418	17	2.4	18	80	4	50	42	9	2	45	1.49
33055430--33055766	126	2.7	125	82	3	419	32	21	16	29	1.95
33058314--33058358	22	2.0	22	95	0	81	26	11	15	46	1.79
33059925--33059981	27	2.2	26	81	9	62	38	3	8	49	1.51
33061376--33061455	10	8.6	10	70	20	57	56	1	0	42	1.07
33061453--33061530	16	5.3	15	69	22	58	53	0	0	46	1.00
33061460--33061544	10	8.6	10	70	19	63	50	0	1	48	1.08
33061453--33061571	57	2.1	58	89	6	181	47	0	1	49	1.17
33065003--33065093	47	2.0	46	86	4	121	29	20	23	25	1.98
33066490--33066532	12	3.6	12	87	6	61	30	13	16	39	1.87
33077333--33077393	31	1.9	32	83	3	79	40	4	9	44	1.59
33078792--33078828	6	6.2	6	100	0	74	32	51	0	16	1.45
33082089--33082114	5	5.2	5	100	0	52	0	19	0	80	0.71
33083681--33083722	20	2.1	20	86	0	57	47	0	7	45	1.30
33092164--33092206	20	2.2	20	86	0	59	48	0	6	44	1.29
33092145--33092205	32	1.9	32	83	12	81	49	1	4	44	1.33
33095914--33097528	411	4.0	407	87	3	2168	38	11	17	31	1.86
33108101--33108551	27	16.7	27	79	7	291	43	19	17	19	1.89
33108088--33108551	54	8.6	54	81	4	397	43	19	17	19	1.89
33108088--33108551	81	5.7	81	78	8	405	43	19	17	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33108785--33108839	26	2.1	26	82	0	65	21	18	25	34	1.96
33108941--33109057	28	4.2	28	85	6	166	22	23	23	30	1.99
33108941--33109063	56	2.2	56	92	1	203	21	22	23	31	1.98
33110698--33110794	49	2.0	49	90	6	153	32	18	25	22	1.97
33114562--33114617	18	3.1	18	81	2	67	0	48	8	42	1.34
33116180--33116231	16	3.3	16	75	5	52	17	32	1	48	1.58
33120522--33120552	16	1.9	16	93	0	53	61	6	0	32	1.21
33124286--33124343	25	2.4	25	82	2	73	24	29	18	27	1.98
33124425--33124514	26	3.5	26	83	4	112	15	26	24	33	1.95
33128238--33128262	13	1.9	13	100	0	50	0	28	0	72	0.86
33129058--33129087	15	2.0	15	93	0	51	36	3	0	60	1.14
33129643--33129694	24	2.2	24	82	6	61	38	1	1	57	1.21
33131439--33131467	5	5.8	5	100	0	58	20	0	0	79	0.74
33131775--33131807	6	5.3	6	92	7	57	15	0	45	39	1.46
33131995--33132405	124	3.3	124	95	0	714	29	19	20	29	1.98
33133502--33134327	114	7.3	114	88	2	1191	30	19	22	26	1.98
33135164--33135202	17	2.4	16	84	12	53	30	0	33	35	1.58
33135171--33135203	17	1.9	17	93	0	57	27	0	36	36	1.57
33135428--33135926	9	52.6	9	68	23	113	47	13	0	38	1.46
33135480--33135512	16	2.1	16	100	0	66	45	24	0	30	1.53
33135499--33135754	34	7.3	34	73	22	160	46	12	0	40	1.42
33135463--33136141	115	5.9	115	75	14	551	45	13	0	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33135595--33135627	16	2.1	16	100	0	66	45	24	0	30	1.53
33135649--33135749	22	4.6	22	68	26	72	49	11	0	38	1.40
33135636--33135783	34	4.5	34	84	12	186	47	11	0	40	1.45
33135760--33135805	22	2.1	22	91	0	74	45	10	2	41	1.51
33135893--33135925	16	2.1	16	100	0	66	45	24	0	30	1.53
33135791--33135907	31	3.6	33	79	10	118	49	12	0	37	1.41
33135975--33136194	9	25.3	9	69	17	108	42	16	1	39	1.59
33135858--33136172	84	3.8	81	82	9	377	42	14	1	40	1.54
33135975--33136194	25	8.5	25	67	19	96	42	16	1	39	1.59
33135831--33136172	165	2.1	163	91	4	553	42	14	1	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161