genome.fa.s22.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  42  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12818214--12818251	20	1.9	20	94	0	67	52	13	5	28	1.61
12818214--12818263	20	2.5	20	86	0	64	46	12	10	32	1.74
12819537--12819613	33	2.3	32	80	6	82	27	20	15	36	1.93
12819558--12819751	105	1.9	101	84	4	262	29	24	13	31	1.94
12819636--12819751	33	3.5	33	77	7	99	28	25	14	31	1.95
12843347--12843610	40	6.7	40	89	5	360	25	21	27	25	1.99
12843347--12843643	119	2.5	118	81	9	338	26	21	27	25	1.99
12856069--12856123	24	2.3	24	78	15	60	5	38	10	45	1.63
12856274--12856334	6	10.0	6	85	3	77	1	1	49	47	1.21
12868317--12868351	5	7.0	5	93	0	52	5	0	37	57	1.23
12872104--12872167	24	2.6	24	80	2	65	32	20	28	18	1.96
12877206--12877441	69	3.4	69	79	2	258	23	21	18	36	1.95
12884528--12884593	21	3.3	21	63	16	59	27	10	31	30	1.90
12884527--12884603	38	2.0	38	97	0	145	23	11	32	32	1.91
12886921--12887001	19	4.2	19	80	10	92	39	24	27	8	1.84
12886920--12886997	39	2.0	40	85	7	106	41	24	25	8	1.84
12887023--12887135	40	2.9	41	88	6	155	38	17	26	17	1.92
12887064--12887129	20	3.3	20	70	8	71	31	21	27	19	1.97
12891081--12891134	3	18.0	3	100	0	108	33	0	0	66	0.92
12897922--12897957	15	2.3	16	90	4	56	75	0	0	25	0.81
12898528--12898588	26	2.4	25	83	5	68	63	4	4	26	1.35
12898609--12898701	11	8.5	11	69	15	50	48	1	30	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901260--12901298	18	2.2	17	86	13	53	33	0	20	46	1.51
12901524--12901621	23	4.3	23	84	2	135	22	22	24	30	1.99
12901526--12901614	45	2.0	45	88	0	133	21	23	24	30	1.99
12907975--12907999	13	1.9	13	100	0	50	24	8	0	68	1.16
12908699--12908767	22	3.1	22	78	17	72	26	8	2	62	1.39
12909056--12909150	38	2.5	37	78	13	97	37	12	0	49	1.41
12924616--12924645	9	3.3	9	90	0	51	40	0	3	56	1.16
12930911--12931185	73	3.7	71	77	11	268	44	4	10	40	1.61
12931412--12931437	6	4.3	6	100	0	52	19	65	0	15	1.27
12937296--12937334	12	3.2	12	85	0	51	17	35	10	35	1.84
12949767--12949815	24	2.0	24	100	0	98	36	30	0	32	1.58
12952704--12952789	26	3.3	26	85	4	104	16	25	22	36	1.94
12960285--12960357	37	2.0	37	94	0	128	34	9	6	49	1.62
12964940--12964998	24	2.5	24	88	2	93	54	1	1	42	1.20
12972332--12972358	13	2.1	13	100	0	54	44	0	7	48	1.31
12981304--12981340	16	2.2	17	90	4	58	64	0	0	35	0.94
12984043--12984087	22	2.0	23	91	8	76	31	6	8	53	1.58
12986878--12987940	531	2.0	531	99	0	2108	25	23	15	36	1.94
12988274--12988624	173	2.0	173	96	0	639	18	18	19	42	1.90
12990202--12990252	24	2.2	24	77	22	56	33	0	5	60	1.21
12990422--12990461	20	2.0	20	90	0	62	50	12	10	27	1.72
12990410--12990476	34	1.9	35	84	3	91	46	10	8	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12993726--12994359	132	4.8	132	79	2	628	38	14	14	33	1.86
12993796--12994359	263	2.1	265	83	3	708	38	14	14	33	1.86
12999505--12999529	7	3.6	7	100	0	50	16	0	0	84	0.63
13006091--13006172	25	3.3	24	74	3	74	36	20	20	21	1.95
13006164--13006293	50	2.6	50	82	7	133	39	18	23	19	1.93
13011804--13011849	23	2.0	23	86	0	65	32	8	19	39	1.82
13014620--13014689	25	2.7	26	78	6	81	28	17	27	27	1.97
13014770--13014884	49	2.3	49	76	7	126	39	20	25	14	1.91
13015881--13015944	31	2.1	31	83	13	80	25	15	1	57	1.47
13026337--13026374	18	2.2	17	86	9	51	28	13	0	57	1.36
13026766--13026894	69	1.9	69	90	0	204	30	13	7	48	1.71
13030500--13030531	13	2.5	13	100	0	64	37	15	18	28	1.92
13038206--13038281	24	3.2	24	74	10	66	53	3	1	40	1.27
13038276--13038330	28	1.9	29	82	10	69	49	7	7	36	1.58
13038376--13038409	15	2.4	14	85	5	50	73	0	2	23	0.97
13039162--13039228	16	4.2	16	88	0	89	44	1	22	31	1.62
13044742--13044825	19	4.2	20	81	6	100	45	19	22	13	1.84
13044775--13044867	21	4.4	21	75	0	87	46	16	19	18	1.85
13044761--13044867	42	2.6	42	88	2	146	46	16	19	16	1.84
13046354--13046391	20	1.9	20	94	0	67	42	2	13	42	1.57
13049909--13050018	57	1.9	57	94	0	193	49	11	13	25	1.76
13050474--13050524	12	4.2	12	73	14	50	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13050467--13050518	25	2.0	26	88	3	79	48	0	0	51	1.00
13050478--13050529	25	2.2	25	86	6	72	46	0	0	53	1.00
13051973--13052009	18	2.0	18	89	5	56	0	21	0	78	0.75
13051959--13052009	14	3.6	14	85	12	61	0	25	0	74	0.82
13055934--13056027	19	4.8	19	89	5	152	38	11	14	35	1.83
13055934--13056027	40	2.4	38	94	3	161	38	11	14	35	1.83
13062674--13062722	24	1.9	27	88	12	77	34	0	12	53	1.39
13074409--13074481	19	3.6	19	77	12	74	35	8	13	42	1.74
13074439--13074481	23	1.9	23	90	4	70	34	6	13	44	1.72
13075221--13075270	25	2.0	26	88	4	75	32	8	4	56	1.47
13085373--13085436	33	2.0	32	90	3	101	39	25	9	26	1.86
13085651--13086134	41	11.8	41	97	1	891	27	22	21	29	1.99
13086322--13086346	2	12.5	2	100	0	50	52	0	0	48	1.00
13087638--13087662	13	1.9	13	100	0	50	40	24	4	32	1.73
13092543--13092752	44	4.8	43	67	12	122	29	20	26	23	1.99
13092469--13092857	132	2.9	132	94	0	706	29	21	25	23	1.99
13092581--13092765	44	4.2	44	66	13	128	29	21	23	25	1.99
13092849--13093214	44	8.5	43	75	10	252	28	21	22	27	1.99
13092849--13093223	84	4.3	87	73	14	206	28	21	23	26	1.99
13092933--13093182	133	1.9	127	81	10	299	28	21	24	26	1.99
13092928--13093223	44	6.8	44	75	13	256	27	21	24	26	1.99
13093400--13093473	19	3.8	19	78	7	94	40	10	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13093606--13093632	9	3.0	9	100	0	54	88	0	11	0	0.50
13094843--13095034	98	2.0	98	91	2	314	29	10	22	36	1.89
13096122--13096170	26	2.0	25	88	8	73	55	4	8	32	1.48
13096939--13097051	19	5.8	19	83	8	156	36	15	8	39	1.78
13096939--13097050	40	2.8	40	92	5	176	36	14	8	40	1.77
13097589--13097634	19	2.3	20	81	7	58	54	4	2	39	1.32
13097602--13097666	18	3.8	17	74	15	62	56	1	0	41	1.08
13097607--13097674	34	2.0	34	82	5	84	54	1	0	44	1.09
13097630--13097676	19	2.7	18	84	12	62	59	0	0	40	0.97
13098713--13098763	14	3.5	14	81	5	57	35	1	0	62	1.06
13100480--13100514	18	1.9	18	88	0	52	45	14	14	25	1.82
13100840--13100914	19	3.8	19	82	6	96	38	12	16	33	1.85
13100903--13100947	23	2.0	23	86	4	65	33	4	15	46	1.66
13101115--13101153	19	2.0	21	85	10	55	15	10	5	69	1.34
13101548--13101613	4	16.8	4	78	9	55	22	0	4	72	1.02
13119822--13120283	44	10.7	43	72	13	324	25	21	22	30	1.99
13119773--13120298	129	4.1	129	90	0	791	25	21	22	30	1.98
13119817--13120280	85	5.4	82	74	9	318	25	21	22	29	1.99
13120408--13120514	44	2.4	45	83	10	148	26	30	21	21	1.98
13120443--13120860	44	9.6	43	71	10	176	29	23	18	28	1.98
13120409--13120905	217	2.3	218	91	0	789	28	24	19	28	1.98
13122131--13122233	52	2.0	51	88	1	152	13	23	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13138400--13138433	13	2.6	13	95	0	59	35	20	8	35	1.84
13138667--13138702	16	2.1	18	90	10	58	27	0	5	66	1.13
13140575--13140650	17	4.4	17	65	23	50	31	18	0	50	1.47
13140549--13140658	53	2.1	53	100	0	220	30	18	0	50	1.47
13147902--13147942	15	2.8	15	79	13	50	2	19	0	78	0.87
13147914--13147952	19	2.1	18	90	4	60	5	20	2	71	1.17
13155465--13155495	14	2.1	15	94	5	55	74	0	6	19	1.03
13157495--13157561	34	1.9	35	87	3	100	44	14	8	31	1.76
13163705--13163767	27	2.3	27	100	0	126	19	36	28	15	1.92
13163923--13163975	4	13.5	4	79	18	58	77	0	20	1	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161