genome.fa.s22.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  133  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41426012--41426192	59	3.1	57	78	10	177	29	4	1	64	1.23
41426167--41426214	20	2.4	20	86	6	62	43	2	0	54	1.12
41426349--41426641	84	3.4	84	81	5	338	30	9	22	37	1.87
41437458--41437502	14	3.4	14	75	12	58	35	0	46	17	1.49
41437452--41437502	26	2.0	26	100	0	102	37	0	47	15	1.46
41444118--41444156	14	2.8	14	96	0	69	61	0	2	35	1.10
41444117--41444156	17	2.4	17	87	8	55	62	0	2	35	1.09
41448085--41448122	20	1.9	20	94	0	67	52	0	2	44	1.14
41448335--41448365	9	3.4	9	100	0	62	58	32	0	9	1.31
41461422--41461467	21	2.1	23	92	8	78	65	8	10	15	1.47
41472444--41472482	4	9.8	4	88	0	51	48	17	2	30	1.61
41472443--41472494	12	4.3	12	82	0	50	48	13	1	36	1.54
41472443--41472494	8	6.5	8	84	0	50	48	13	1	36	1.54
41478009--41478050	20	2.1	20	100	0	84	4	9	9	76	1.15
41480740--41480942	46	4.3	48	88	7	265	35	14	21	28	1.92
41480674--41480942	98	2.7	98	93	0	457	34	14	22	28	1.93
41480906--41481051	37	4.0	37	93	1	242	36	16	21	24	1.94
41482306--41482449	49	2.9	49	92	1	225	23	13	29	32	1.94
41485641--41485843	46	4.3	48	88	7	265	35	14	21	28	1.92
41485575--41485843	98	2.7	98	93	0	457	34	14	22	28	1.93
41485807--41485952	37	4.0	37	93	1	242	36	16	21	24	1.94
41491840--41491874	14	2.5	14	100	0	70	54	25	0	20	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41492293--41492326	7	4.7	7	96	3	59	26	17	0	55	1.42
41492323--41492405	43	1.9	43	90	4	132	24	26	1	48	1.59
41506781--41506834	19	2.8	19	97	0	99	37	9	16	37	1.81
41506794--41506857	19	3.0	22	86	8	80	37	7	17	37	1.79
41507041--41507085	23	2.0	23	81	0	54	22	0	15	62	1.33
41507220--41507266	23	2.0	24	87	8	69	31	0	2	65	1.04
41507537--41507579	23	1.9	22	85	4	59	32	6	2	58	1.38
41507507--41507588	27	2.9	27	72	18	69	32	7	1	58	1.33
41507380--41507918	271	2.0	271	100	0	1078	32	8	3	55	1.47
41507808--41507850	23	1.9	22	85	4	59	32	6	2	58	1.38
41507778--41507859	27	2.9	27	72	18	69	32	7	1	58	1.33
41508032--41508091	3	20.0	3	100	0	120	33	0	0	66	0.92
41513503--41513572	34	2.1	34	100	0	140	40	5	25	28	1.78
41514171--41514256	44	2.0	44	86	4	120	31	13	26	27	1.94
41514689--41514798	50	2.2	50	88	0	157	29	20	22	28	1.98
41514421--41515024	310	1.9	311	88	2	904	28	18	25	27	1.98
41515035--41515210	50	3.5	50	73	0	163	32	18	21	26	1.97
41514448--41515160	310	2.3	311	82	2	863	29	18	24	27	1.98
41515021--41515239	100	2.2	100	88	0	312	32	18	20	28	1.96
41515253--41515599	130	2.6	132	91	1	572	29	22	24	23	1.99
41521419--41521502	42	2.0	42	86	4	116	30	13	28	27	1.94
41522912--41523095	50	3.7	50	75	2	190	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41522917--41523180	100	2.6	100	87	0	375	30	21	22	25	1.99
41522972--41523145	50	3.5	50	73	3	143	30	22	21	25	1.99
41523106--41523499	168	2.3	168	88	0	565	28	19	24	27	1.98
41523453--41523839	100	3.9	99	86	4	492	30	21	21	26	1.98
41523453--41523781	50	6.6	50	69	2	212	30	21	22	25	1.98
41524608--41524686	19	4.0	19	88	8	113	35	8	16	39	1.80
41524608--41524686	41	2.0	40	87	7	117	35	8	16	39	1.80
41524887--41524931	23	2.0	23	81	0	54	22	0	15	62	1.33
41525344--41525410	25	2.6	25	76	9	64	37	8	0	53	1.32
41525369--41525411	23	1.9	22	90	4	68	37	6	0	55	1.27
41528281--41528395	54	2.1	53	93	3	194	20	20	16	41	1.90
41532910--41532950	18	2.3	18	95	0	73	21	19	26	31	1.97
41535933--41536016	41	2.0	41	100	0	168	54	14	11	19	1.70
41537462--41537496	18	1.9	18	88	0	52	54	8	2	34	1.46
41541089--41541116	14	2.0	14	100	0	56	35	14	0	50	1.43
41542379--41542445	27	2.5	28	85	9	86	28	25	8	37	1.86
41542380--41542512	67	2.0	65	88	5	187	27	25	9	36	1.86
41542447--41542521	27	2.8	27	93	0	123	30	25	8	36	1.85
41542473--41542667	27	7.2	27	78	9	139	38	22	8	30	1.84
41542514--41542752	54	4.4	53	72	11	187	40	19	9	30	1.84
41542500--41542752	27	9.3	27	75	10	149	39	20	9	30	1.84
41542482--41542723	108	2.2	108	78	5	247	39	20	8	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41543652--41543721	25	2.8	25	86	0	86	27	22	21	28	1.99
41543940--41544022	31	2.7	31	96	3	152	28	16	26	27	1.97
41547691--41547727	17	2.2	17	95	0	65	16	2	2	78	0.98
41549869--41549913	22	2.0	22	95	0	81	33	13	24	28	1.93
41550175--41550226	27	2.0	26	84	3	68	34	21	26	17	1.95
41550797--41550850	27	2.0	27	85	3	74	35	20	22	22	1.96
41550851--41550965	27	4.3	26	75	12	99	25	19	19	36	1.94
41550851--41550969	54	2.2	54	87	3	177	25	20	18	36	1.95
41550870--41550969	27	3.7	27	84	5	139	24	20	19	37	1.94
41554926--41554962	13	2.8	13	87	0	56	40	0	24	35	1.55
41557283--41557309	3	9.0	3	100	0	54	33	0	0	66	0.92
41557913--41557963	20	2.7	19	82	14	54	41	0	21	37	1.54
41562356--41562415	27	2.3	26	85	2	75	35	20	23	21	1.96
41562383--41562524	67	2.1	67	88	5	203	30	22	28	18	1.97
41562454--41562505	27	2.0	26	84	3	68	34	21	26	17	1.95
41563146--41563248	54	1.9	54	82	4	127	27	20	20	32	1.97
41563157--41563248	27	3.4	27	83	0	121	25	21	18	34	1.96
41569178--41569313	40	3.4	40	87	3	177	24	28	23	23	1.99
41573489--41573843	177	2.0	177	100	0	710	36	21	12	28	1.91
41579956--41580006	25	2.0	25	88	7	77	31	21	17	29	1.96
41580050--41580084	10	3.4	10	92	7	61	34	17	17	31	1.93
41580045--41580084	21	1.9	21	94	0	71	37	17	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41580044--41580096	21	2.5	20	84	3	70	37	16	13	32	1.88
41585428--41585532	39	2.6	39	86	5	122	24	22	27	24	2.00
41585388--41585532	40	3.7	40	81	12	165	24	23	27	24	2.00
41594664--41594833	43	4.0	42	75	8	119	21	20	24	34	1.97
41594670--41594828	42	3.7	42	75	5	131	22	21	25	31	1.98
41607676--41607715	6	6.8	6	82	5	55	55	0	25	20	1.44
41611387--41611420	17	2.0	17	100	0	68	47	23	11	17	1.81
41615335--41615394	27	2.3	26	85	2	75	35	20	23	21	1.96
41615362--41615500	66	2.0	66	86	6	188	30	22	28	18	1.97
41616135--41616281	27	5.4	27	82	4	161	27	20	17	34	1.95
41616136--41616281	56	2.6	56	82	4	163	27	20	17	34	1.95
41622935--41623075	67	2.1	67	82	6	167	30	21	28	19	1.98
41623712--41623825	54	2.1	54	90	1	176	26	21	16	35	1.95
41623709--41623825	27	4.3	27	85	0	144	26	21	17	35	1.95
41627258--41627289	8	3.8	9	91	8	50	59	0	12	28	1.34
41627905--41627961	18	3.1	18	75	12	53	24	42	0	33	1.55
41629319--41629404	28	3.1	28	80	9	106	34	22	20	22	1.96
41631552--41631576	12	2.1	12	100	0	50	76	0	0	24	0.80
41637587--41637690	28	3.7	28	84	0	136	34	19	24	22	1.96
41656635--41656856	40	5.6	40	89	1	313	29	25	20	23	1.99
41660185--41660280	42	2.3	42	90	0	147	31	25	14	29	1.95
41660847--41660885	20	2.0	20	85	10	53	53	20	2	23	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41683726--41683776	27	1.9	26	88	4	75	19	25	17	37	1.94
41683738--41683999	102	2.6	102	98	1	499	23	25	17	33	1.96
41692977--41693012	18	1.9	19	88	5	56	66	11	2	19	1.35
41698596--41698661	31	2.1	31	94	0	114	25	10	9	54	1.64
41699424--41699562	55	2.6	54	82	3	154	23	23	19	33	1.97
41699548--41699669	47	2.6	47	89	0	190	25	26	13	35	1.92
41699684--41699805	45	2.6	47	77	12	135	22	23	18	35	1.96
41706068--41706275	53	3.9	54	81	4	213	20	25	19	35	1.96
41706079--41706275	55	3.6	54	80	4	218	19	24	19	35	1.95
41706255--41706375	47	2.6	47	89	0	188	25	25	13	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161