genome.fa.s22.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  136  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42338706--42338752	24	2.0	24	83	8	60	17	34	0	48	1.47
42339350--42339537	94	2.0	94	98	0	367	25	22	6	45	1.76
42341534--42341567	11	2.8	13	91	8	54	44	11	8	35	1.72
42342770--42343113	102	3.4	101	85	3	424	28	15	25	30	1.96
42342770--42343107	51	6.7	50	79	6	322	28	15	25	30	1.96
42344932--42344967	18	2.0	18	88	0	54	30	0	19	50	1.48
42345343--42345376	16	2.1	16	88	0	50	52	14	2	29	1.56
42347359--42347481	41	2.9	42	79	7	122	25	18	26	30	1.98
42351723--42351762	19	2.0	20	85	4	55	52	0	0	47	1.00
42352781--42352830	20	2.5	20	84	12	59	42	6	4	48	1.46
42352817--42352873	28	1.9	31	86	10	84	36	0	5	57	1.21
42356278--42356322	23	2.0	23	86	0	63	33	17	2	46	1.61
42360016--42360046	13	2.4	13	100	0	62	25	16	0	58	1.38
42364898--42364988	45	2.0	45	84	0	119	19	14	6	59	1.57
42384034--42384063	3	10.0	3	100	0	60	66	0	33	0	0.92
42392808--42392842	15	2.3	15	100	0	70	42	0	20	37	1.52
42393006--42393053	21	2.3	21	75	7	53	58	0	10	31	1.32
42396243--42396391	74	2.0	74	98	0	289	26	14	10	48	1.75
42400832--42401013	91	2.0	91	98	0	355	36	21	14	28	1.92
42402864--42403021	83	1.9	83	86	0	226	34	20	20	24	1.97
42402982--42403202	27	8.3	27	79	3	205	42	22	15	20	1.89
42403004--42403202	54	3.7	53	81	1	227	42	21	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42402982--42403188	107	1.9	107	85	3	283	42	23	14	19	1.88
42403409--42403489	26	3.1	26	83	3	101	20	23	23	32	1.98
42403564--42403617	28	2.0	27	92	3	90	22	24	25	27	2.00
42407246--42407294	25	2.0	25	84	8	64	28	20	22	28	1.98
42422400--42422447	11	4.4	11	75	0	51	64	10	4	20	1.41
42422363--42422425	31	2.0	32	84	12	85	60	11	3	25	1.45
42422400--42422460	22	2.8	22	75	9	70	60	11	6	21	1.53
42422868--42422918	25	2.0	25	81	7	59	47	11	23	17	1.81
42423182--42423232	25	2.1	23	85	7	66	62	1	5	29	1.29
42427155--42427662	22	21.4	23	69	17	201	44	18	12	24	1.84
42427155--42427258	46	2.2	47	81	8	122	43	18	14	24	1.87
42427229--42427286	28	2.1	28	93	0	98	41	22	13	22	1.89
42427175--42427356	75	2.5	71	83	8	251	43	17	13	25	1.85
42427257--42427518	47	5.6	47	84	4	289	44	18	11	24	1.83
42427155--42427377	122	1.8	122	82	3	288	43	18	13	25	1.86
42427264--42427518	94	2.8	92	81	3	325	45	18	11	24	1.83
42427489--42427546	28	2.1	28	96	0	107	43	20	13	22	1.87
42427343--42427683	166	2.1	167	85	5	460	46	19	12	22	1.83
42427199--42427586	75	5.4	74	74	15	243	44	18	12	24	1.84
42427524--42427683	47	3.4	47	95	0	286	46	19	11	22	1.82
42427410--42427640	122	1.9	119	85	4	320	45	19	12	22	1.83
42427186--42427683	260	1.9	259	94	0	870	44	18	12	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42428670--42428768	28	3.6	27	81	11	112	28	28	12	31	1.92
42436897--42436955	21	2.8	20	80	14	57	54	3	1	40	1.27
42436937--42436996	11	5.4	11	78	9	68	61	0	3	35	1.12
42436922--42437005	33	2.6	33	94	1	143	61	0	2	35	1.09
42436980--42437024	16	2.7	17	79	6	56	60	0	0	40	0.97
42438545--42438862	107	3.0	107	89	0	483	33	16	18	31	1.94
42439636--42439666	13	2.3	14	94	5	55	70	12	0	16	1.16
42445599--42445639	20	2.0	20	95	0	73	48	14	17	19	1.81
42446264--42446430	32	5.2	32	59	18	76	37	13	15	33	1.86
42446240--42446490	65	3.9	65	98	0	477	38	13	17	30	1.88
42448742--42448826	14	6.1	14	71	5	55	37	15	15	31	1.88
42448726--42448825	28	3.6	28	77	10	80	41	15	13	31	1.84
42448725--42448832	42	2.6	42	80	0	117	41	13	13	30	1.84
42449407--42449534	54	2.4	54	81	0	139	21	26	27	25	1.99
42450865--42450985	54	2.2	54	82	0	143	20	23	26	29	1.99
42456395--42456530	49	2.8	49	80	0	146	27	28	16	27	1.97
42459873--42459955	33	2.5	33	84	3	96	49	14	4	31	1.64
42460598--42461154	138	4.0	138	89	1	830	41	7	5	45	1.56
42460598--42461154	275	2.0	277	89	3	863	41	7	5	45	1.56
42463002--42463129	45	2.9	44	81	8	159	22	21	14	41	1.89
42465293--42465367	20	3.7	20	75	10	64	25	12	10	52	1.70
42471032--42471124	44	2.1	44	93	0	159	9	26	10	52	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42472130--42472159	13	2.3	13	94	0	51	90	6	3	0	0.56
42473851--42473937	44	2.0	44	88	6	133	21	8	14	55	1.66
42491434--42491618	101	1.8	101	84	3	255	26	18	25	29	1.98
42507639--42507679	19	2.1	20	82	13	50	41	17	0	41	1.49
42507709--42507817	41	2.7	41	91	2	175	22	29	19	28	1.98
42507709--42507854	41	3.6	40	80	10	154	23	28	19	28	1.98
42507709--42507866	82	1.9	82	83	10	207	24	27	18	29	1.98
42513152--42513180	6	4.8	6	100	0	58	17	0	0	82	0.66
42517942--42517984	18	2.3	19	80	4	52	41	2	48	6	1.43
42520836--42520886	26	2.0	26	84	0	66	29	29	17	23	1.97
42523928--42523959	16	1.9	17	93	6	57	37	21	0	40	1.54
42524120--42524290	43	4.0	42	74	11	127	32	26	18	22	1.97
42529405--42529477	34	2.1	35	94	2	130	41	6	17	34	1.76
42530191--42530267	22	3.5	22	83	0	100	18	14	27	40	1.89
42530515--42530677	43	3.8	43	82	4	195	29	25	19	25	1.99
42532304--42532456	41	3.7	41	88	1	209	30	29	17	22	1.97
42532303--42532499	82	2.4	82	77	1	216	27	27	18	26	1.98
42549908--42550116	92	2.3	91	86	5	278	45	3	3	46	1.39
42550044--42550091	26	1.9	25	84	16	64	45	0	2	52	1.12
42550253--42550287	18	2.0	17	88	5	52	45	0	0	54	0.99
42550449--42550543	45	2.1	44	88	1	136	33	27	6	32	1.82
42550522--42550559	16	2.4	16	90	0	58	34	34	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42552092--42552158	33	2.0	32	83	16	84	70	4	8	16	1.30
42553852--42553888	6	6.5	6	84	9	51	10	0	16	72	1.10
42553850--42553889	18	2.3	17	91	4	62	10	0	17	72	1.11
42563196--42563244	20	2.6	19	81	12	57	65	0	2	32	1.04
42563282--42563306	5	5.0	5	100	0	50	60	0	0	40	0.97
42568144--42568239	49	2.0	47	84	7	124	29	10	9	51	1.67
42574728--42574793	13	5.1	13	85	7	89	37	28	6	27	1.80
42575724--42575775	25	2.1	25	96	0	95	36	11	11	40	1.78
42576043--42576067	12	2.1	12	100	0	50	24	0	8	68	1.16
42576927--42577044	30	3.9	30	88	0	128	28	16	21	33	1.94
42589108--42589162	28	2.0	28	89	7	85	21	7	12	58	1.59
42602582--42602656	11	6.7	11	77	7	62	21	26	4	48	1.68
42602714--42602750	19	1.9	19	88	0	56	45	0	0	54	1.00
42603869--42603894	7	3.7	7	100	0	52	26	0	15	57	1.38
42605134--42605177	8	5.2	8	80	20	54	52	0	0	47	1.00
42605141--42605194	19	2.8	19	97	0	99	48	0	0	51	1.00
42605138--42605191	12	4.2	13	80	20	60	48	0	0	51	1.00
42605225--42605310	22	4.0	21	88	8	120	44	32	0	23	1.54
42605225--42605310	43	2.0	44	88	6	131	44	32	0	23	1.54
42608408--42608840	124	3.5	124	92	0	697	30	21	18	30	1.96
42608964--42609006	22	2.0	22	90	0	68	48	34	0	16	1.46
42612004--42612059	6	9.3	6	81	14	62	35	1	28	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42612137--42612162	10	2.6	10	100	0	52	26	19	0	53	1.45
42634115--42634218	49	2.1	49	90	0	163	29	8	11	50	1.69
42635370--42635463	46	2.1	46	90	4	147	35	29	5	29	1.80
42635445--42635482	16	2.4	16	95	0	67	26	34	2	36	1.71
42635939--42636030	27	3.3	26	75	22	80	38	0	5	56	1.22
42637307--42637335	8	3.8	8	95	4	51	65	0	0	34	0.93
42637737--42637803	30	2.2	30	79	12	75	37	1	5	55	1.34
42648707--42648902	110	1.8	107	84	3	266	33	19	16	30	1.94
42649253--42649319	16	4.2	16	84	0	98	58	1	11	28	1.43
42649464--42649496	17	1.9	17	88	11	50	57	0	3	39	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161