genome.fa.s22.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  82  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25921706--25921764	21	2.9	19	71	14	55	11	22	0	66	1.24
25925583--25925624	21	2.0	21	95	0	75	35	4	26	33	1.77
25931461--25931514	22	2.5	22	91	8	85	74	1	22	1	1.02
25934667--25934903	51	4.6	51	79	10	284	30	27	16	24	1.97
25934663--25934898	104	2.3	101	84	7	298	31	28	16	24	1.96
25936454--25936479	13	2.0	13	100	0	52	46	7	7	38	1.61
25941508--25941791	129	2.2	128	91	2	453	29	20	19	30	1.97
25941768--25941882	45	2.5	46	91	1	178	29	21	20	27	1.98
25941842--25942526	129	5.2	129	74	9	492	28	22	19	30	1.98
25941971--25942408	221	2.0	221	90	0	689	28	22	19	29	1.98
25941485--25942364	349	2.5	349	96	0	1618	28	22	19	29	1.98
25941588--25942409	44	18.7	46	67	17	320	28	22	19	29	1.98
25941539--25942526	44	22.6	44	69	11	236	28	22	18	30	1.98
25942523--25942852	88	3.8	87	85	5	398	23	23	23	29	1.99
25942612--25942838	44	5.2	44	67	16	146	24	23	24	27	2.00
25944997--25945034	9	4.3	9	90	6	60	7	0	10	81	0.87
25944997--25945034	17	2.2	18	90	4	60	7	0	10	81	0.87
25950184--25950228	21	2.2	20	84	11	56	80	0	13	6	0.91
25951418--25951480	21	3.0	21	76	6	65	14	17	0	68	1.22
25951420--25951498	42	1.9	41	82	12	99	15	15	1	68	1.28
25951490--25951544	28	2.0	29	89	7	87	32	9	1	56	1.41
25951536--25951672	66	2.1	66	97	0	256	40	12	18	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25955088--25955132	16	3.0	15	84	9	56	55	0	0	44	0.99
25955102--25955162	25	2.6	23	76	10	61	54	3	0	42	1.17
25957774--25957957	43	4.3	43	85	2	226	29	28	15	26	1.96
25957814--25958090	146	1.9	145	81	5	335	29	27	15	27	1.96
25957900--25958015	60	1.9	60	85	0	160	30	25	17	26	1.97
25958367--25958453	43	2.0	43	84	8	115	43	11	10	34	1.75
25961151--25961219	16	4.2	16	92	3	120	24	1	37	36	1.65
25961151--25961219	33	2.1	32	94	2	120	24	1	37	36	1.65
25961455--25961489	18	2.0	17	88	5	52	54	0	0	45	0.99
25966531--25966621	46	2.0	46	89	2	139	35	1	15	48	1.52
25966636--25966684	25	1.9	26	87	4	73	38	6	4	51	1.46
25966928--25966973	23	2.0	23	100	0	92	39	17	21	21	1.93
25968250--25968292	22	2.0	22	85	0	59	34	32	2	30	1.71
25968281--25968328	7	6.9	7	77	17	55	31	45	0	22	1.53
25968263--25968335	28	2.6	27	71	16	67	35	39	0	24	1.56
25968280--25968328	21	2.3	20	86	10	71	30	46	0	22	1.52
25968636--25968839	7	28.4	7	69	12	67	45	33	1	19	1.61
25968658--25968691	8	4.2	8	96	0	59	55	32	0	11	1.36
25968635--25968715	37	2.2	36	79	14	94	46	33	0	19	1.50
25968838--25968864	13	2.1	13	100	0	54	37	22	7	33	1.82
25968994--25969070	40	1.9	40	84	5	102	36	20	22	20	1.95
25968985--25969361	41	9.2	41	84	2	445	30	28	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25969416--25969530	40	2.9	39	84	3	149	24	24	20	30	1.99
25969437--25969530	40	2.3	40	94	0	161	23	24	21	30	1.99
25971157--25971181	13	1.9	13	100	0	50	40	4	16	40	1.67
25971544--25971571	8	3.5	8	100	0	56	35	0	0	64	0.94
25978262--25978291	15	2.0	15	100	0	60	20	33	6	40	1.78
25978264--25978302	15	2.6	15	87	0	51	23	35	2	38	1.68
25983261--25983318	24	2.5	23	81	16	66	32	5	0	62	1.18
25985206--25985322	40	2.9	40	92	0	180	23	25	23	27	2.00
25985219--25985401	40	4.6	40	80	5	169	22	25	24	27	2.00
25985707--25985785	29	2.7	29	86	5	106	27	32	15	24	1.95
25987856--25987994	46	3.0	46	93	0	224	29	27	8	34	1.87
25988740--25988780	17	2.5	16	88	7	64	53	19	0	26	1.45
26009410--26009446	15	2.3	17	86	9	51	29	8	2	59	1.40
26011421--26011455	17	2.1	17	94	0	61	14	5	8	71	1.29
26012730--26012837	37	3.1	36	72	21	95	40	0	5	52	1.31
26012789--26012846	31	1.9	29	86	13	82	36	3	5	55	1.39
26014788--26014823	18	2.0	18	94	0	63	25	5	16	52	1.65
26017082--26017116	16	2.2	16	90	10	54	28	17	2	51	1.59
26020860--26020918	20	3.1	19	78	7	57	38	18	23	18	1.93
26022900--26022969	6	11.7	6	71	0	59	5	20	4	70	1.26
26022915--26022969	18	3.1	18	86	0	83	5	18	5	70	1.26
26026033--26026099	28	2.4	27	87	9	91	29	7	11	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26029241--26029463	79	2.8	78	83	7	272	24	27	22	25	2.00
26029241--26029463	39	5.7	40	87	6	280	24	27	22	25	2.00
26031066--26031256	28	6.8	28	90	0	292	33	25	18	22	1.97
26031620--26031785	27	6.1	27	87	0	224	18	16	24	40	1.90
26041707--26042554	422	2.0	422	96	0	1543	33	12	18	34	1.89
26045274--26045327	19	2.9	18	81	8	56	75	5	0	18	0.98
26045301--26045332	13	2.3	15	84	15	50	75	0	3	21	0.95
26046967--26047014	15	3.1	15	78	6	51	68	4	8	18	1.31
26051158--26051207	19	2.5	20	84	12	68	4	20	2	74	1.08
26051185--26051217	12	2.5	14	90	9	52	6	15	6	72	1.24
26054071--26054111	19	2.2	19	91	8	66	34	0	43	21	1.53
26057694--26057810	27	4.3	27	81	0	126	41	19	17	20	1.90
26057694--26057808	54	2.1	54	85	3	151	42	20	17	20	1.89
26058870--26058981	54	2.1	54	84	0	143	45	22	15	16	1.85
26058879--26058985	27	4.0	27	82	2	117	44	24	14	16	1.84
26065959--26065997	21	1.9	19	90	10	60	56	7	5	30	1.49
26079413--26079559	20	7.3	20	81	0	132	10	27	23	38	1.88
26081942--26082013	30	2.3	30	83	4	81	18	29	31	20	1.96
26083855--26083898	17	2.6	16	83	16	54	77	2	4	15	1.04
26102683--26102718	17	2.1	17	100	0	72	22	11	16	50	1.77
26111539--26113329	128	14.0	128	98	0	3372	32	13	18	34	1.90
26141782--26141842	25	2.4	25	83	0	77	32	21	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26157894--26157972	37	2.1	37	88	4	115	25	30	18	25	1.98
26158092--26158325	47	5.0	47	91	0	324	26	31	10	31	1.90
26159486--26159664	85	2.1	85	100	0	358	26	27	8	37	1.85
26163371--26163404	15	2.2	16	89	5	52	32	0	0	67	0.91
26163395--26163450	29	1.9	30	85	7	80	53	1	0	44	1.11
26163590--26163622	9	3.8	9	88	8	50	69	12	0	18	1.18
26165969--26165993	13	1.9	13	100	0	50	48	0	0	52	1.00
26169952--26169992	22	1.9	22	85	14	59	46	2	7	43	1.44
26176901--26176960	29	2.1	29	100	0	120	51	20	0	28	1.47
26178796--26178866	25	2.8	25	84	0	97	40	19	16	22	1.91
26183885--26183912	12	2.3	12	100	0	56	35	14	0	50	1.43
26189309--26189335	6	4.5	6	100	0	54	18	18	29	33	1.95
26192739--26192806	23	3.0	22	81	10	82	22	16	22	39	1.92
26194432--26194465	7	4.9	7	92	0	50	50	0	5	44	1.26
26197252--26197300	21	2.4	20	86	3	62	34	26	12	26	1.92
26198028--26198100	38	1.9	38	97	0	137	43	12	5	38	1.65
26203426--26203453	6	4.7	6	100	0	56	14	0	0	85	0.59
26204126--26204160	17	2.0	18	88	5	54	14	31	42	11	1.81
26215994--26216138	39	3.7	39	82	0	182	30	5	21	42	1.75
26218739--26218791	17	3.1	17	86	7	72	18	5	0	75	0.99
26221143--26221218	28	2.6	28	80	11	82	38	0	1	60	1.05
26221161--26221208	21	2.4	21	86	6	64	35	0	2	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26221141--26221218	29	2.8	29	75	14	83	38	0	1	60	1.05
26231689--26231729	2	20.5	2	100	0	82	0	48	0	51	1.00
26238574--26238629	24	2.3	24	90	0	85	25	35	25	14	1.93
26238598--26238710	54	2.1	54	85	3	147	27	27	26	18	1.98
26248953--26248998	23	2.0	23	83	8	58	6	15	4	73	1.19
26252713--26252756	18	2.3	20	81	11	58	68	6	0	25	1.14
26253364--26253430	30	2.2	30	100	0	134	58	0	25	16	1.38
26260167--26260306	56	2.7	50	82	6	145	26	19	30	24	1.98
26260172--26260405	50	4.6	50	75	7	152	27	18	28	25	1.98
26267748--26267994	50	4.8	50	77	9	180	28	21	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161