genome.fa.s22.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  12  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980378--3980497	49	2.4	49	85	2	150	27	22	28	21	1.99
3984921--3984958	13	3.2	12	85	10	51	81	0	13	5	0.85
4016574--4016668	30	3.2	30	84	1	120	24	14	22	38	1.91
4016615--4016715	29	3.5	29	82	2	87	20	19	23	35	1.96
4026846--4026955	56	2.1	54	88	10	165	24	23	30	21	1.99
4028315--4028500	40	4.7	40	80	6	171	26	27	20	24	1.99
4028317--4028498	80	2.3	80	80	5	199	26	28	20	24	1.99
4030146--4030275	49	2.6	49	85	6	174	28	21	26	23	1.99
4034526--4034678	32	4.8	32	76	12	143	38	20	20	20	1.94
4034727--4034791	27	2.5	26	80	9	78	35	23	21	20	1.96
4034867--4034988	24	5.1	24	85	0	154	44	21	7	27	1.78
4035006--4035098	27	3.4	27	89	0	132	20	25	19	34	1.96
4035006--4035126	54	2.2	54	84	5	147	20	25	19	34	1.96
4035143--4035243	27	3.8	26	81	6	114	24	14	17	42	1.88
4035464--4035568	40	2.6	39	79	4	120	20	30	18	30	1.96
4038255--4038310	25	2.2	25	87	6	78	28	19	23	28	1.98
4038267--4038324	25	2.3	24	82	11	64	29	20	22	27	1.99
4040032--4040183	70	2.2	70	91	0	250	33	25	13	28	1.93
4042518--4042573	30	2.0	27	86	10	76	14	32	30	23	1.94
4043223--4043365	40	3.6	40	80	5	157	34	18	27	20	1.95
4043203--4043365	79	2.1	79	83	2	202	34	17	26	21	1.96
4048483--4048669	32	5.8	32	87	0	230	38	19	18	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4048483--4048669	64	2.9	64	86	0	257	38	19	18	23	1.93
4048483--4048669	96	1.9	96	85	2	259	38	19	18	23	1.93
4048718--4048780	27	2.4	26	84	10	83	36	20	23	19	1.95
4048843--4048901	24	2.5	24	80	0	64	47	18	8	25	1.77
4048860--4048951	24	3.8	24	80	0	85	41	18	8	31	1.81
4048989--4049170	27	6.7	27	78	8	147	20	16	20	42	1.89
4048946--4049131	81	2.3	81	83	5	216	22	18	18	40	1.91
4049002--4049170	54	3.1	50	78	11	167	21	16	18	43	1.88
4048975--4049131	81	1.9	81	87	2	226	21	17	19	41	1.90
4048975--4049170	81	2.4	81	82	5	191	21	16	19	41	1.90
4059237--4059344	28	3.9	28	90	1	155	25	12	29	32	1.93
4059215--4059344	56	2.3	58	85	6	167	26	13	29	30	1.94
4062102--4062262	35	4.6	35	70	14	107	36	18	21	24	1.95
4072726--4072782	27	2.1	27	93	0	96	21	22	12	43	1.85
4074088--4074528	230	1.9	231	86	2	627	34	17	17	30	1.93
4081138--4081179	19	2.2	19	100	0	84	30	28	21	19	1.97
4081708--4081755	25	1.9	25	87	8	71	72	6	6	14	1.24
4081707--4081764	30	1.9	30	86	6	82	74	5	5	15	1.18
4085671--4085708	19	2.0	20	89	5	60	36	10	21	31	1.87
4085624--4085756	67	2.0	67	92	2	223	34	9	26	30	1.87
4085689--4086607	48	19.2	48	99	0	1693	34	8	27	29	1.86
4085577--4085804	114	2.0	114	92	2	377	34	8	26	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4086778--4086856	37	2.1	37	88	4	115	25	18	30	25	1.98
4094412--4094437	12	2.2	12	100	0	52	50	19	0	30	1.48
4094871--4094905	16	2.2	16	90	5	54	2	14	0	82	0.77
4094897--4094994	32	3.3	32	64	21	95	14	19	4	62	1.47
4094886--4095005	56	2.1	57	96	3	226	11	20	3	64	1.41
4095948--4095973	13	2.0	13	100	0	52	30	0	23	46	1.53
4097311--4097428	41	2.9	41	87	0	164	22	18	24	34	1.96
4106720--4106750	9	3.3	9	95	4	53	41	0	0	58	0.98
4113226--4113466	71	3.4	71	100	0	482	42	7	17	32	1.76
4116745--4116780	18	2.1	18	89	5	56	72	0	0	27	0.85
4119495--4119532	1	38.0	1	89	0	58	0	0	5	94	0.30
4122176--4122213	20	1.9	20	100	0	76	47	18	5	28	1.70
4122248--4122299	17	3.1	17	80	8	70	55	0	1	42	1.10
4122246--4122299	16	3.3	16	82	5	72	57	0	1	40	1.09
4123856--4123913	19	3.0	20	79	16	59	56	0	1	41	1.09
4123869--4123915	20	2.2	22	85	7	62	61	0	2	36	1.08
4124766--4124813	10	4.6	10	77	10	51	37	0	2	60	1.09
4126977--4127127	81	1.9	81	100	0	302	39	7	8	44	1.64
4129938--4129991	25	2.1	26	86	10	76	62	1	3	31	1.23
4130783--4130841	30	2.0	30	83	6	75	47	8	8	35	1.64
4139221--4139320	4	25.0	4	93	0	173	48	25	1	26	1.58
4140470--4140507	11	3.2	12	81	11	51	28	13	0	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4143870--4144119	85	2.9	85	84	1	322	36	19	16	28	1.93
4147895--4147950	27	2.1	27	100	0	112	42	7	10	39	1.67
4157273--4157315	21	2.0	21	82	8	52	55	2	0	41	1.12
4168124--4168155	16	2.1	15	94	5	55	18	9	0	71	1.12
4169610--4169679	16	4.2	16	74	15	61	17	2	1	78	0.94
4169617--4169662	6	8.0	6	78	9	51	17	2	2	78	0.96
4175367--4175398	8	4.0	8	95	0	55	12	0	40	46	1.42
4185173--4185200	3	9.3	3	100	0	56	67	0	0	32	0.91
4186314--4186350	18	2.1	18	89	0	56	21	10	2	64	1.37
4192928--4192971	22	2.0	21	82	4	52	25	9	20	45	1.80
4194210--4194261	2	26.5	2	84	3	70	0	44	0	55	0.99
4194202--4194264	6	10.8	6	89	6	67	0	41	0	58	0.98
4198135--4198160	6	4.3	6	100	0	52	19	0	0	80	0.71
4200208--4200232	11	2.3	11	100	0	50	84	0	0	16	0.63
4201998--4202052	19	2.9	19	76	10	58	36	3	3	56	1.34
4205163--4205281	60	2.0	60	96	0	220	31	0	13	53	1.45
4205443--4205553	36	3.2	36	65	17	108	18	0	21	59	1.43
4205479--4205584	31	3.3	31	65	17	88	22	1	23	51	1.58
4205409--4205588	67	2.7	67	96	1	328	21	1	21	55	1.53
4205574--4205725	77	2.0	77	89	5	236	33	0	13	52	1.41
4207836--4207970	33	4.1	33	77	7	130	15	43	14	26	1.85
4207844--4207991	66	2.2	66	79	2	145	14	43	14	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4207844--4207991	33	4.5	32	75	8	109	14	43	14	28	1.84
4208181--4208528	75	4.5	77	89	5	517	27	8	9	55	1.59
4208181--4208528	151	2.2	154	90	4	540	27	8	9	55	1.59
4211490--4212062	44	13.2	43	60	19	116	24	22	22	29	1.99
4211534--4211670	43	3.2	43	66	17	129	22	21	26	29	1.99
4211486--4212078	87	6.8	87	91	0	954	24	22	22	30	1.99
4213305--4213337	7	5.0	7	92	7	52	15	15	0	69	1.19
4213720--4213813	46	2.0	47	85	2	127	8	11	5	74	1.21
4219243--4219497	33	7.7	33	72	10	216	33	18	21	27	1.96
4219276--4219515	33	7.3	33	76	5	261	34	18	21	26	1.96
4219244--4219549	132	2.3	132	91	4	476	33	18	22	25	1.97
4219241--4219515	66	4.2	66	97	0	507	33	18	21	26	1.96
4221073--4221154	28	2.9	28	72	17	78	41	0	2	56	1.13
4221102--4221141	20	1.9	22	90	10	66	45	0	0	55	0.99
4221102--4221141	22	1.9	20	85	10	53	45	0	0	55	0.99
4221376--4221411	16	2.2	16	90	0	54	63	0	36	0	0.94
4222363--4222417	27	2.2	23	81	12	56	45	3	21	29	1.69
4222522--4222576	23	2.4	23	84	0	74	20	16	23	40	1.91
4228388--4228460	30	2.4	30	79	9	85	61	1	2	34	1.19
4234029--4234127	48	2.1	48	82	3	119	43	13	14	29	1.83
4240236--4240672	125	3.5	125	92	1	705	31	17	21	29	1.96
4242769--4242831	22	2.8	22	80	20	69	46	1	30	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242788--4242818	11	2.8	11	95	0	53	48	3	29	19	1.64
4244809--4244866	29	1.9	31	86	6	84	12	3	13	70	1.28
4244827--4244881	29	1.9	29	81	3	67	16	1	10	70	1.23
4244840--4244884	20	2.2	20	84	4	54	20	0	11	68	1.19
4259672--4259727	20	2.8	20	88	0	85	26	0	21	51	1.48
4268262--4268323	23	2.7	23	89	0	88	35	1	17	45	1.59
4273575--4273651	23	3.3	23	81	0	100	37	0	16	45	1.48
4273584--4273649	13	5.6	12	68	21	50	36	0	18	45	1.49
4274897--4274938	19	2.2	19	95	0	75	38	2	4	54	1.34
4274906--4274959	16	3.2	16	81	7	54	37	1	5	55	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161