genome.fa.s22.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  117  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37011310--37011479	90	1.9	88	84	2	223	34	23	14	27	1.94
37011313--37011488	45	3.9	45	84	0	201	33	24	14	27	1.94
37028344--37028395	24	2.2	24	82	6	61	50	1	40	7	1.42
37034745--37034810	33	2.0	33	91	5	107	34	24	4	36	1.76
37040990--37041027	18	2.1	18	95	0	67	15	50	15	18	1.79
37043426--37043727	150	2.0	150	98	0	586	34	11	22	31	1.90
37052856--37052940	40	2.1	41	82	8	104	30	7	16	45	1.74
37052881--37052940	20	3.0	19	76	9	57	33	6	15	45	1.72
37054974--37055026	20	2.7	20	80	11	63	28	7	20	43	1.79
37063115--37063198	20	4.3	19	73	3	69	29	10	11	47	1.74
37064243--37064302	30	2.0	31	86	3	86	40	1	38	20	1.62
37064514--37064577	9	7.1	9	90	0	101	31	10	12	45	1.77
37064514--37064577	27	2.4	27	97	0	119	31	10	12	45	1.77
37068111--37068161	21	2.3	21	75	18	50	52	13	15	17	1.74
37071068--37071106	17	2.3	17	86	8	53	53	10	5	30	1.56
37071352--37071387	18	1.9	18	88	5	54	58	5	0	36	1.22
37071278--37071498	98	2.2	99	85	1	291	50	13	3	33	1.57
37077962--37078038	27	2.9	27	82	7	111	31	14	24	29	1.94
37080022--37080088	21	3.2	21	72	4	64	23	32	13	29	1.93
37080030--37080096	20	3.3	20	68	4	53	20	28	16	34	1.95
37079990--37080097	41	2.6	41	88	0	171	18	29	17	34	1.94
37080000--37080133	41	3.3	41	83	4	128	20	29	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37083962--37084112	27	5.6	26	80	4	115	26	16	28	28	1.97
37083962--37084087	54	2.3	54	82	8	148	26	16	28	28	1.97
37083989--37084138	55	2.8	54	81	6	160	27	15	30	27	1.96
37083962--37084117	82	1.9	81	81	3	188	26	16	28	28	1.96
37083989--37084138	27	5.5	27	81	3	113	27	15	30	27	1.96
37097259--37097318	25	2.4	25	77	2	68	41	11	23	23	1.87
37102030--37102084	28	2.0	28	96	0	101	18	25	9	47	1.78
37113386--37113415	13	2.4	12	89	10	51	0	20	0	80	0.72
37121776--37121823	21	2.3	20	79	6	60	47	14	12	25	1.79
37132241--37132446	27	7.3	27	79	13	184	44	16	18	20	1.87
37132265--37132338	37	2.0	37	91	0	121	44	10	22	21	1.83
37132241--37132365	64	2.0	64	88	0	187	44	13	20	20	1.85
37132302--37132459	53	3.0	54	84	6	198	41	18	18	22	1.91
37132775--37132864	30	3.0	30	91	4	139	23	26	23	26	2.00
37148995--37149039	21	2.1	21	83	0	54	44	2	28	24	1.66
37153140--37153258	25	4.8	25	73	8	100	27	21	23	27	1.99
37163786--37163887	53	1.9	53	86	4	143	25	41	7	25	1.82
37165851--37165887	18	2.0	19	89	5	58	54	8	0	37	1.30
37165866--37165912	14	3.3	14	76	5	58	51	10	4	34	1.56
37165854--37165928	29	2.6	28	87	4	105	50	10	5	33	1.60
37171690--37171836	43	3.4	43	78	10	167	28	23	15	31	1.95
37178281--37179426	573	2.0	573	100	0	2292	44	23	5	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37179843--37179981	43	3.3	43	82	9	185	28	20	16	33	1.95
37182286--37182345	25	2.4	25	81	10	77	35	20	20	25	1.96
37186993--37187020	13	2.2	13	100	0	56	50	7	0	42	1.30
37190207--37190258	24	2.2	24	89	0	77	55	9	1	32	1.43
37192177--37192228	24	2.2	24	89	0	77	55	9	1	32	1.43
37194715--37194773	29	2.0	30	87	9	86	32	5	11	50	1.61
37199647--37199851	103	2.0	103	97	0	383	29	23	18	28	1.97
37200940--37201313	189	2.0	187	93	1	640	23	18	11	46	1.81
37209661--37209722	26	2.4	26	88	0	88	37	14	12	35	1.85
37211519--37211761	106	2.3	106	99	0	477	25	21	31	21	1.98
37211508--37211786	50	5.3	50	75	10	247	26	21	30	21	1.98
37215889--37215951	28	2.3	28	83	2	74	31	23	20	23	1.98
37216052--37216106	26	2.1	26	93	0	92	38	23	20	18	1.93
37216274--37216724	27	16.7	27	81	1	368	17	16	20	45	1.85
37216275--37216724	54	8.3	54	79	3	406	17	16	20	45	1.85
37223007--37223039	12	2.7	13	86	13	52	69	0	0	30	0.88
37223964--37224019	13	4.5	13	78	13	73	35	0	14	50	1.43
37224856--37224897	17	2.3	19	88	8	61	26	4	0	69	1.08
37225628--37225661	17	1.9	18	94	5	61	67	0	8	23	1.18
37226526--37226621	45	2.1	46	86	1	131	32	19	19	28	1.97
37228977--37229046	16	4.4	16	90	0	86	32	0	32	34	1.58
37228977--37229046	32	2.2	32	86	0	95	32	0	32	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229025--37229134	45	2.6	43	80	9	129	33	5	29	31	1.80
37229280--37229314	18	2.0	17	88	5	52	54	0	0	45	0.99
37229167--37229483	157	2.0	157	97	0	598	44	3	5	47	1.41
37229417--37229458	15	2.7	16	82	14	52	52	2	0	45	1.13
37229426--37229467	15	2.9	15	82	10	52	52	0	0	47	1.00
37242511--37242565	28	2.0	28	100	0	110	18	21	18	41	1.90
37244565--37244594	13	2.3	13	94	0	51	56	6	10	26	1.57
37252830--37252953	50	2.5	50	80	1	142	23	29	20	26	1.99
37252848--37252995	50	2.9	50	81	7	145	26	32	16	24	1.96
37254457--37254506	6	8.8	6	76	10	52	48	16	18	18	1.82
37258749--37258925	63	2.8	62	78	5	187	29	25	18	25	1.98
37264652--37264707	25	2.2	25	79	14	62	46	14	3	35	1.62
37267360--37267556	98	2.0	98	94	0	349	37	25	9	27	1.87
37268866--37268978	19	5.8	19	85	4	163	34	15	10	38	1.83
37268866--37268977	40	2.8	40	93	2	183	34	15	10	39	1.82
37269364--37269698	172	1.9	174	80	9	391	27	22	20	29	1.98
37269181--37269843	217	3.1	217	91	0	1042	26	22	20	30	1.98
37269186--37269821	44	14.7	44	70	15	325	27	22	20	29	1.98
37269836--37270315	132	3.6	132	95	0	818	25	26	18	29	1.98
37269875--37270174	44	6.8	44	65	13	134	23	27	20	29	1.99
37271527--37271571	6	7.2	6	82	9	54	2	22	0	75	0.91
37271528--37271583	20	2.9	19	84	7	69	1	19	0	78	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37271535--37271582	12	3.8	12	84	13	53	0	20	0	79	0.74
37271535--37271583	13	3.8	13	82	15	57	0	20	0	79	0.73
37274350--37274574	113	2.0	113	98	0	432	36	23	18	21	1.95
37275780--37275976	98	2.0	98	92	0	331	37	24	10	27	1.88
37277289--37277401	19	5.8	19	85	4	163	34	15	10	38	1.83
37277289--37277400	40	2.8	40	93	2	183	34	15	10	39	1.82
37280193--37280234	15	2.7	16	82	14	52	45	0	2	52	1.13
37280184--37280225	15	2.9	15	82	10	52	47	0	0	52	1.00
37280168--37280484	157	2.0	157	97	0	598	47	5	3	44	1.41
37280337--37280371	18	2.0	17	88	5	52	45	0	0	54	0.99
37280169--37280407	75	3.1	75	64	18	191	46	3	3	46	1.35
37280519--37280623	44	2.5	40	76	15	113	31	29	4	34	1.78
37280517--37280626	45	2.6	44	81	8	131	31	29	5	33	1.80
37280605--37280674	16	4.4	16	90	0	86	34	32	0	32	1.58
37280605--37280674	32	2.2	32	86	0	95	34	32	0	32	1.58
37282251--37282493	75	3.2	73	81	4	252	24	20	17	37	1.94
37282309--37282441	40	3.5	39	72	10	121	22	23	17	36	1.94
37282723--37282759	18	2.1	18	94	0	65	29	5	13	51	1.63
37282786--37283172	192	2.0	192	100	0	774	27	14	18	39	1.89
37287926--37288002	38	2.1	35	86	11	102	42	12	20	23	1.87
37287935--37288011	38	2.0	38	94	0	136	41	14	19	24	1.89
37289340--37289588	75	3.3	74	80	6	236	24	20	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37289482--37289620	75	1.9	75	84	0	188	23	20	20	35	1.96
37291558--37291616	25	2.3	25	94	2	100	44	30	8	16	1.78
37292177--37292272	37	2.6	37	86	3	131	43	15	14	26	1.85
37295133--37295303	50	3.4	50	85	0	225	28	23	29	18	1.98
37295144--37295324	100	1.8	100	81	0	227	28	22	29	19	1.98
37296950--37297007	29	2.0	29	100	0	116	27	3	17	51	1.61
37299513--37299555	11	3.8	11	80	17	52	30	2	2	65	1.18
37299516--37299559	23	1.9	23	90	0	70	31	2	4	61	1.28
37301786--37301844	30	1.9	31	83	16	79	52	3	0	44	1.17
37307659--37307709	26	2.0	26	88	7	77	33	1	0	64	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161