genome.fa.s22.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  120  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37912584--37912682	37	2.5	40	82	11	114	52	11	4	32	1.55
37912669--37912715	23	2.0	23	84	8	60	59	14	2	23	1.46
37912995--37913094	3	33.3	3	95	0	182	0	33	1	66	0.99
37916198--37916409	106	2.0	106	97	0	397	31	18	9	40	1.83
37919811--37919872	26	2.4	26	76	12	67	64	3	0	32	1.09
37928987--37929183	68	2.9	68	99	0	385	31	17	23	26	1.97
37931090--37931186	35	2.8	35	73	3	97	41	16	16	25	1.89
37937270--37937321	16	3.4	16	76	12	56	32	13	13	40	1.83
37938708--37938786	35	2.3	35	88	0	113	41	16	15	26	1.88
37938718--37938804	35	2.5	35	86	0	111	47	17	12	22	1.81
37943209--37943299	38	2.4	38	83	7	114	35	13	18	32	1.90
37944407--37944474	29	2.3	30	85	12	97	51	10	7	30	1.63
37944420--37944486	29	2.3	29	85	7	84	47	13	4	34	1.63
37947577--37947613	17	2.2	17	95	0	65	35	8	43	13	1.74
37949017--37949110	23	4.1	23	76	5	91	22	15	23	38	1.93
37949715--37949808	47	2.0	47	100	0	188	29	19	17	34	1.94
37967578--37967809	50	4.6	50	83	0	266	21	29	21	26	1.99
37967597--37967809	100	2.1	100	94	0	372	21	29	23	26	1.99
37978259--37978301	21	2.0	22	90	4	70	37	4	9	48	1.56
37989526--37989571	23	2.0	22	83	4	56	56	17	15	10	1.67
37991556--37991628	30	2.4	30	88	0	110	12	31	31	24	1.92
37991571--37991628	17	3.6	17	68	17	52	12	31	31	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38007207--38007365	87	1.8	86	89	1	246	36	24	15	23	1.93
38013924--38013971	23	2.1	23	85	14	64	58	6	0	35	1.23
38023983--38024040	31	1.9	29	82	6	71	41	15	13	29	1.86
38031395--38031437	12	3.5	12	87	3	50	2	25	0	72	0.97
38034146--38035135	489	2.0	491	93	2	1691	31	12	26	28	1.93
38045983--38046055	26	2.8	25	81	8	83	30	12	10	46	1.76
38046315--38046367	21	2.4	21	87	6	70	32	18	1	47	1.60
38064071--38064188	21	5.6	21	80	0	110	15	30	31	22	1.95
38067257--38067316	21	2.6	23	84	10	70	35	1	1	61	1.16
38067303--38067440	61	2.3	60	85	8	176	44	0	2	51	1.21
38067599--38067634	16	2.2	16	90	0	54	36	25	0	38	1.56
38069388--38069510	27	4.6	27	86	0	129	32	15	25	26	1.95
38073884--38075077	597	2.0	593	92	1	1987	33	17	17	31	1.94
38090135--38090195	27	2.3	27	82	5	70	27	3	3	65	1.24
38101126--38101200	3	25.0	3	97	0	141	0	32	0	68	0.90
38110927--38110976	18	2.6	19	90	9	75	30	18	8	44	1.78
38112299--38112535	118	2.0	118	100	0	474	29	17	16	36	1.92
38116697--38116735	21	1.9	21	84	5	53	56	12	10	20	1.65
38118300--38118350	26	2.0	26	84	7	68	47	1	5	45	1.38
38122676--38122734	24	2.5	24	86	10	77	45	0	3	50	1.18
38127300--38127347	23	2.0	25	88	8	73	52	16	16	14	1.76
38127325--38127385	28	2.2	27	82	2	68	47	16	18	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38151116--38151177	25	2.5	25	82	10	74	53	19	22	4	1.64
38151143--38151190	20	2.4	20	82	0	60	50	20	20	8	1.74
38160710--38160883	85	2.0	86	97	1	332	33	20	12	33	1.90
38170804--38170870	29	2.3	29	84	0	80	22	22	22	32	1.98
38176304--38176334	16	2.0	16	93	6	55	64	0	3	32	1.09
38177109--38177155	21	2.3	22	82	14	64	44	2	4	48	1.34
38180424--38180577	79	1.9	79	90	0	245	41	20	10	27	1.85
38185814--38186313	70	7.2	70	76	5	312	26	18	23	32	1.97
38185747--38186313	140	4.1	139	77	2	485	26	18	23	31	1.97
38185747--38186313	70	8.1	69	74	7	267	26	18	23	31	1.97
38187917--38187954	19	2.0	20	89	5	60	34	7	2	55	1.43
38191941--38191990	20	2.5	20	80	0	64	24	28	10	38	1.87
38193473--38193504	11	2.6	13	80	19	50	56	0	0	43	0.99
38198233--38198289	27	2.1	27	90	0	87	17	24	22	35	1.95
38198244--38198317	27	2.7	28	83	4	80	21	24	16	37	1.93
38198297--38198354	27	2.1	27	81	6	64	25	22	17	34	1.96
38200254--38200492	67	3.6	65	86	5	286	25	28	15	31	1.95
38200236--38200492	134	1.9	134	84	6	342	24	27	15	32	1.95
38224038--38224077	18	2.2	18	86	4	53	57	0	35	7	1.27
38237538--38237591	21	2.6	21	90	0	90	29	33	9	27	1.88
38237652--38237711	21	2.7	22	74	10	68	70	5	3	21	1.22
38248149--38248189	20	2.0	20	100	0	82	39	19	14	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38249324--38249356	16	2.1	16	94	0	57	36	3	36	24	1.71
38249570--38249611	15	2.7	16	82	14	52	52	2	0	45	1.13
38249579--38249620	15	2.9	15	82	10	52	52	0	0	47	1.00
38249605--38249912	61	5.1	61	67	16	246	49	6	1	42	1.40
38249689--38249740	15	3.6	15	80	12	56	53	1	0	44	1.11
38249806--38249851	16	2.9	16	78	12	51	52	2	0	45	1.13
38249806--38249860	15	3.7	15	79	13	53	52	1	0	45	1.11
38249568--38249985	120	3.5	120	96	1	757	49	5	2	42	1.38
38249926--38250208	91	3.0	93	85	6	333	48	3	3	45	1.35
38249967--38250134	47	3.7	46	70	18	143	47	4	2	45	1.37
38250026--38250086	28	2.2	28	85	5	81	50	3	0	45	1.17
38250001--38250208	91	2.3	91	93	0	344	46	4	3	46	1.39
38250026--38250168	44	3.2	43	68	16	119	48	3	2	46	1.31
38250051--38250189	47	3.0	47	68	17	137	49	4	2	43	1.34
38253170--38253235	33	2.0	33	100	0	132	36	6	15	42	1.71
38256593--38256684	44	2.0	46	89	4	143	30	3	27	39	1.72
38256840--38257077	110	2.2	108	83	12	244	52	4	1	42	1.29
38256822--38257080	120	2.3	110	89	7	376	50	4	1	43	1.31
38256934--38256997	28	2.4	28	86	5	87	56	0	0	43	0.99
38257040--38257103	32	2.0	32	81	0	74	48	3	0	48	1.17
38258472--38258575	49	2.1	49	87	0	145	50	11	8	29	1.69
38259039--38259311	67	4.0	67	89	2	415	32	9	7	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38259158--38259187	12	2.5	12	100	0	60	30	0	10	60	1.30
38259227--38259256	12	2.5	12	100	0	60	23	6	10	60	1.52
38259065--38259311	136	1.8	136	93	1	433	32	9	7	50	1.63
38262747--38262785	3	13.0	3	94	0	60	0	38	0	61	0.96
38275192--38275249	30	1.9	30	89	0	89	24	36	27	12	1.91
38279735--38279812	30	2.6	30	79	2	86	44	10	7	37	1.67
38279741--38279826	29	2.9	28	81	5	82	43	9	8	39	1.67
38286262--38286469	27	7.7	27	85	2	249	43	20	18	18	1.89
38286239--38286485	54	4.6	53	81	6	230	43	20	17	18	1.88
38286239--38286488	81	3.1	80	82	4	288	44	20	16	18	1.87
38286663--38286736	26	2.8	27	77	6	80	14	17	24	43	1.87
38286876--38286936	30	2.1	28	87	6	86	24	24	21	29	1.99
38294524--38294593	5	12.0	6	72	24	53	50	1	1	47	1.19
38294524--38294593	11	6.5	11	68	28	53	50	1	1	47	1.19
38294552--38294599	16	2.9	16	87	6	69	54	0	2	43	1.12
38294551--38294599	11	4.5	11	78	19	57	53	0	2	44	1.12
38298360--38298519	81	2.0	81	85	2	214	41	14	11	32	1.82
38298925--38298965	14	2.9	14	92	0	64	63	29	7	0	1.21
38298928--38298965	7	5.4	7	96	0	58	65	28	5	0	1.14
38299395--38299443	3	16.3	3	100	0	98	32	0	0	67	0.91
38307608--38307650	17	2.4	18	80	3	52	13	11	0	74	1.07
38318630--38318682	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38324173--38324372	45	4.5	45	80	5	181	34	26	15	24	1.94
38324212--38324376	90	1.8	90	84	0	222	34	24	15	26	1.94
38328181--38328222	21	2.0	21	95	0	75	33	21	11	33	1.90
38335582--38335611	10	3.0	10	95	0	51	20	26	3	50	1.64
38341985--38342105	59	2.1	59	100	0	242	33	13	12	41	1.81
38357226--38357266	15	2.6	16	88	7	57	73	2	0	24	0.96
38357227--38357304	19	4.3	19	72	15	58	67	1	1	29	1.06
38357280--38357335	9	5.8	10	78	17	57	60	3	0	35	1.14
38357276--38357333	19	3.0	20	78	12	59	60	3	0	36	1.14
38361586--38362020	41	10.6	42	85	4	484	22	20	24	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161