genome.fa.s22.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  54  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16881889--16882057	81	2.1	80	93	2	295	30	24	25	18	1.98
16882667--16882934	38	7.1	38	82	3	281	31	29	20	18	1.96
16882662--16882934	114	2.4	114	85	2	352	31	29	20	18	1.96
16889241--16889461	38	5.8	37	77	5	183	32	26	20	19	1.97
16889229--16889461	76	3.1	75	82	2	261	33	27	20	18	1.96
16893966--16894279	153	2.1	153	97	0	592	42	15	15	26	1.87
16905394--16905486	36	2.5	35	80	13	98	44	1	23	31	1.61
16907294--16907328	5	7.0	5	100	0	70	20	0	60	20	1.37
16907364--16907405	19	2.1	21	86	8	61	38	0	2	59	1.10
16917135--16917180	22	2.1	21	84	11	58	58	2	2	36	1.22
16917651--16917726	14	5.6	14	71	16	61	52	1	0	46	1.08
16918617--16918656	18	2.2	18	86	8	55	20	0	12	67	1.22
16918657--16918690	11	3.0	12	87	12	54	67	0	0	32	0.91
16919138--16919499	183	1.9	185	83	5	469	44	12	5	37	1.66
16919586--16919640	20	2.8	20	88	5	69	58	1	0	40	1.09
16919591--16919633	19	2.4	17	79	20	52	55	2	0	41	1.12
16919597--16919640	19	2.2	20	96	4	81	63	2	0	34	1.07
16921904--16921962	17	3.4	17	71	13	57	38	3	16	40	1.66
16923694--16924143	226	2.0	226	92	0	740	33	21	12	32	1.91
16929332--16929383	26	2.0	26	84	0	68	34	17	23	25	1.96
16929337--16929390	26	2.1	26	82	0	63	33	18	25	22	1.97
16929441--16929657	32	7.0	32	71	8	126	38	21	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16929479--16929593	59	1.9	59	87	3	169	37	20	21	20	1.95
16929902--16929983	27	3.1	27	82	6	89	23	21	21	32	1.98
16933965--16934252	145	2.0	143	89	2	418	26	24	9	39	1.86
16935093--16935153	31	2.0	31	100	0	122	59	16	4	19	1.55
16937289--16937322	16	2.2	15	89	5	50	55	2	0	41	1.15
16937389--16937444	29	1.9	29	85	7	78	53	14	5	26	1.62
16942700--16942777	39	2.0	39	97	0	147	47	20	10	21	1.80
16943410--16943438	15	2.0	15	93	6	51	62	10	0	27	1.28
16950338--16950421	38	2.2	39	93	2	143	46	0	3	50	1.19
16950348--16950416	21	3.5	21	64	22	58	43	0	4	52	1.21
16950740--16950793	23	2.4	23	87	3	74	18	1	33	46	1.60
16951499--16951565	9	6.8	10	75	16	68	44	1	1	52	1.19
16951499--16951565	20	3.4	19	82	8	89	44	1	1	52	1.19
16952825--16952878	26	2.1	26	100	0	108	16	7	11	64	1.47
16955564--16955598	16	2.1	16	89	5	52	45	2	0	51	1.16
16960179--16960231	27	2.0	27	88	0	79	35	24	24	15	1.94
16966720--16966774	28	2.0	28	92	0	92	10	29	27	32	1.91
16966875--16966904	7	4.3	7	91	0	51	26	0	56	16	1.40
16972659--16972771	59	1.9	60	94	5	203	30	8	7	53	1.59
16972783--16972824	15	2.6	17	85	10	54	19	7	2	71	1.20
16977566--16977631	6	10.7	6	82	6	51	69	13	9	7	1.35
16977566--16977631	12	5.3	12	80	7	60	69	13	9	7	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16977566--16977605	18	2.2	18	90	0	62	70	15	10	5	1.32
16978520--16978569	7	7.1	7	76	17	50	68	0	16	16	1.22
16978512--16978561	21	2.3	23	82	6	68	68	2	16	14	1.31
16978520--16978569	21	2.4	21	82	0	64	68	0	16	16	1.22
16979835--16980113	88	3.2	87	79	5	287	27	25	23	23	2.00
16980112--16980263	52	3.1	52	85	12	221	24	23	21	30	1.99
16980165--16980414	44	5.9	44	84	7	336	26	22	24	27	1.99
16980165--16980394	125	1.8	124	94	0	406	26	23	23	26	2.00
16982211--16982252	15	2.6	17	85	10	54	19	7	2	71	1.20
16986002--16986090	43	2.1	43	97	0	169	24	19	17	38	1.93
16988299--16988333	16	2.1	17	89	5	54	37	0	51	11	1.38
16989921--16989982	3	21.0	3	93	3	108	1	32	0	66	1.02
16998866--16998928	23	2.7	23	82	9	74	53	0	0	46	1.00
16999273--16999350	32	2.6	29	73	15	77	42	1	1	55	1.16
16999507--16999556	24	2.0	25	84	3	66	52	0	4	44	1.20
17000472--17000503	7	4.7	7	92	7	57	75	0	0	25	0.81
17001714--17001772	22	2.7	22	83	0	64	33	15	30	20	1.93
17005262--17005381	25	4.8	25	76	14	79	19	28	19	33	1.96
17005288--17005381	25	3.8	23	76	14	82	19	29	19	31	1.96
17005384--17005440	25	2.3	25	81	6	71	19	24	21	35	1.96
17011166--17011967	397	2.0	403	97	1	1508	35	17	16	30	1.92
17012001--17012716	357	2.0	357	99	0	1414	39	18	11	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17014954--17015009	28	2.0	27	82	6	67	60	5	0	33	1.19
17015036--17015100	27	2.3	29	81	5	80	55	3	1	40	1.25
17019008--17019062	23	2.4	23	84	6	67	60	0	0	40	0.97
17019364--17019410	20	2.3	20	81	0	58	31	4	0	63	1.13
17019471--17019536	29	2.2	30	84	10	91	37	3	3	56	1.30
17019479--17019552	31	2.4	31	80	10	82	40	1	2	55	1.22
17019531--17019558	14	2.0	14	100	0	56	50	0	0	50	1.00
17021200--17021247	22	2.2	22	100	0	96	18	25	27	29	1.98
17029019--17029058	21	2.0	20	85	5	53	22	20	2	55	1.56
17032306--17032350	23	2.0	23	86	4	65	55	4	6	33	1.46
17036805--17036835	15	2.1	15	100	0	62	6	32	19	41	1.77
17037125--17037259	42	3.1	45	78	6	134	31	16	8	44	1.77
17040089--17040114	8	3.2	8	100	0	52	65	11	11	11	1.48
17041228--17041361	62	2.2	58	84	7	171	50	3	3	42	1.38
17044603--17044725	61	2.0	61	93	3	212	31	15	15	37	1.89
17047164--17047192	10	2.9	10	100	0	58	31	6	20	41	1.79
17048464--17048612	66	2.3	66	95	1	264	31	7	21	39	1.81
17055264--17055297	18	1.9	18	88	5	52	20	14	14	50	1.78
17055815--17055853	19	2.0	20	90	5	62	38	5	5	51	1.46
17057575--17057703	51	2.5	52	82	3	172	26	14	31	27	1.95
17064542--17064590	26	2.0	25	88	8	73	26	8	8	57	1.56
17065363--17065447	39	2.2	39	91	0	134	30	3	22	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17073835--17073954	52	2.3	51	92	1	195	26	10	30	31	1.90
17082642--17082676	16	2.2	16	100	0	70	22	25	11	40	1.88
17084931--17084964	17	2.0	17	88	11	52	47	8	26	17	1.77
17085588--17085928	179	1.9	179	95	0	610	28	13	22	36	1.91
17089759--17089957	45	4.5	44	74	9	136	26	14	23	35	1.94
17092565--17092653	24	3.7	24	68	13	65	17	29	22	30	1.97
17092625--17092692	26	2.7	25	75	4	66	19	27	17	35	1.94
17100393--17100436	17	2.6	17	82	7	54	72	4	20	2	1.13
17101699--17101812	41	2.8	41	89	1	174	26	28	21	24	1.99
17103279--17103338	17	3.5	17	73	8	59	33	35	16	15	1.90
17104681--17104781	53	1.9	53	89	0	157	38	9	11	39	1.75
17112471--17112520	18	2.8	18	77	14	50	38	4	0	58	1.17
17113792--17113820	10	2.7	11	89	10	51	44	0	0	55	0.99
17113918--17113992	21	3.5	21	69	16	64	36	12	6	45	1.68
17113894--17113991	43	2.2	44	94	3	180	33	10	6	50	1.61
17124820--17124947	62	2.1	62	96	0	238	47	12	14	25	1.79
17125509--17125563	16	3.4	16	82	5	67	32	20	5	41	1.75
17135196--17135459	40	6.6	40	87	6	349	25	22	27	24	2.00
17135196--17135492	159	1.9	159	82	6	379	26	22	26	24	2.00
17161613--17161867	121	2.1	120	85	2	332	22	27	16	32	1.96
17161774--17161841	27	2.5	26	81	6	73	19	29	16	35	1.93
17163375--17163786	31	13.3	31	81	2	452	27	15	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17165903--17166044	27	5.3	27	84	5	182	28	26	16	28	1.97
17165903--17166073	54	3.2	54	84	8	199	29	25	15	28	1.96
17165949--17166175	28	8.2	27	76	11	167	29	22	12	36	1.91
17165903--17166076	81	2.2	79	81	9	199	29	25	15	29	1.96
17166029--17166175	56	2.6	56	80	4	188	29	19	10	40	1.86
17167334--17167435	41	2.5	40	87	6	141	27	25	19	27	1.99
17167334--17167450	41	2.9	41	82	5	112	28	25	20	25	1.99
17173714--17173815	41	2.5	40	87	6	141	27	25	19	27	1.99
17173714--17173830	41	2.9	41	82	5	112	28	25	20	25	1.99
17174926--17174950	13	1.9	13	100	0	50	68	24	0	8	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161