genome.fa.s22.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  116  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36725156--36725246	25	3.6	25	80	2	96	24	21	24	29	1.99
36727422--36727464	20	2.2	19	83	8	50	37	11	13	37	1.82
36730576--36730662	43	2.0	43	90	0	138	34	26	13	25	1.93
36731395--36731534	51	2.9	48	73	14	133	46	7	2	43	1.45
36737198--36737231	15	2.1	16	89	10	52	23	0	2	73	0.97
36743215--36743606	88	4.5	88	90	0	586	28	28	23	19	1.99
36743444--36743587	44	3.3	44	65	3	110	25	27	24	22	2.00
36743620--36743952	44	7.7	44	85	6	421	28	18	24	29	1.98
36743620--36743952	126	2.6	129	86	3	440	28	18	24	29	1.98
36743660--36743913	82	3.0	82	82	8	323	30	17	23	28	1.97
36744494--36744597	45	2.3	44	78	19	110	28	18	27	25	1.98
36744567--36745012	129	3.5	128	92	2	664	29	22	21	26	1.99
36744304--36745012	44	16.4	44	67	12	240	29	21	21	27	1.98
36744348--36744815	217	2.2	217	82	3	539	30	19	20	28	1.97
36747915--36747958	23	1.9	23	90	0	70	38	22	20	18	1.93
36749037--36749090	23	2.3	23	90	0	90	37	0	14	48	1.45
36749046--36749088	13	3.5	13	81	18	65	34	0	16	48	1.46
36762750--36762840	45	2.0	45	85	2	121	37	28	6	27	1.82
36762821--36762889	16	4.2	16	92	3	120	37	36	0	26	1.57
36762821--36762889	33	2.1	32	94	2	120	37	36	0	26	1.57
36763032--36763064	16	2.1	17	88	11	52	24	0	6	69	1.10
36763038--36763085	23	2.1	23	85	11	64	18	2	4	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36763188--36763307	58	2.1	58	96	0	222	33	15	10	40	1.81
36763309--36763364	24	2.3	25	81	3	69	67	3	1	26	1.16
36763382--36763417	17	2.1	17	100	0	72	50	16	8	25	1.73
36765761--36765799	17	2.4	16	88	12	62	20	5	17	56	1.60
36765768--36765803	17	2.1	17	100	0	72	25	8	16	50	1.73
36765831--36765885	26	2.2	24	83	6	65	27	3	5	63	1.33
36765878--36765997	58	2.1	58	96	0	222	40	10	15	33	1.81
36766100--36766147	23	2.1	23	84	7	62	75	4	2	18	1.07
36775689--36775936	29	8.5	29	77	8	193	37	12	27	22	1.90
36775692--36775950	59	4.4	57	70	12	177	37	13	26	22	1.92
36775692--36775936	116	2.1	117	86	5	345	37	12	26	22	1.90
36778430--36778504	23	3.3	23	94	0	123	37	0	13	49	1.42
36778439--36778504	13	5.5	13	74	20	72	37	0	13	48	1.43
36799621--36799673	20	2.7	20	80	11	63	43	20	7	28	1.79
36801712--36801765	20	2.7	20	79	0	63	44	14	5	35	1.69
36801706--36801790	40	2.1	40	82	8	102	45	16	7	30	1.74
36815576--36815665	33	2.7	33	84	3	110	30	18	17	33	1.95
36823533--36823569	15	2.5	15	90	0	56	29	13	24	32	1.93
36825683--36825718	15	2.4	15	90	0	54	30	16	19	33	1.94
36828196--36828286	27	3.4	27	84	0	110	20	16	21	40	1.91
36828195--36828340	54	2.7	54	80	4	134	21	18	21	39	1.93
36828224--36828345	27	4.6	25	73	10	66	22	20	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36843883--36843936	26	2.1	26	82	0	63	25	24	25	24	2.00
36844083--36844151	27	2.6	27	84	6	88	40	20	17	21	1.91
36844356--36844441	26	3.3	26	83	6	120	27	9	20	41	1.83
36850914--36850975	28	2.3	27	86	5	81	48	19	8	24	1.75
36851570--36851621	27	1.9	27	84	0	68	19	19	23	38	1.93
36851598--36851794	26	7.5	26	88	0	277	22	16	21	39	1.92
36857618--36857736	25	4.9	24	83	11	161	52	4	26	17	1.63
36857618--36857736	49	2.4	49	95	0	211	52	4	26	17	1.63
36859354--36859546	51	3.8	49	84	4	215	30	26	16	26	1.96
36860984--36861167	51	3.6	51	81	3	176	26	15	26	31	1.96
36867675--36867725	23	2.2	23	92	0	84	31	9	17	41	1.82
36871915--36872055	50	2.8	51	83	3	178	29	25	17	28	1.97
36871882--36872051	51	3.4	51	78	6	184	30	25	14	29	1.95
36877529--36877575	12	4.0	11	86	10	58	51	0	10	38	1.37
36878349--36878466	45	2.6	44	80	6	121	50	9	19	21	1.75
36881027--36881065	20	2.0	20	90	10	62	15	23	5	56	1.59
36881016--36881066	12	4.2	12	78	9	50	17	21	3	56	1.57
36888799--36888915	62	1.9	62	85	3	164	20	29	28	22	1.98
36888800--36888938	62	2.2	62	83	2	163	17	30	27	23	1.97
36892313--36892375	19	3.2	20	75	22	62	39	4	1	53	1.31
36892625--36892665	21	2.0	21	85	9	57	43	24	0	31	1.54
36892633--36892674	21	2.0	20	86	13	59	40	26	0	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36896936--36896998	19	3.2	20	75	22	62	39	4	1	53	1.31
36897248--36897288	21	2.0	21	85	9	57	43	24	0	31	1.54
36897256--36897297	21	2.0	20	86	13	59	40	26	0	33	1.56
36901003--36901229	111	2.0	113	96	2	422	37	10	9	43	1.71
36902911--36902955	23	2.0	22	83	12	56	57	26	2	13	1.48
36903829--36903901	33	2.2	33	90	7	112	39	1	1	57	1.16
36904611--36904654	16	2.8	16	82	6	54	40	0	4	54	1.21
36909129--36909161	17	1.9	17	93	0	57	60	12	3	24	1.46
36909371--36909416	23	2.0	23	83	8	58	63	6	4	26	1.38
36910910--36911033	44	2.8	44	88	0	167	26	21	23	28	1.99
36911259--36911604	44	7.4	44	65	15	140	28	22	19	29	1.98
36911337--36912039	44	15.0	45	66	13	234	28	23	18	30	1.98
36910926--36912254	571	2.3	571	92	1	2182	27	21	19	31	1.97
36912051--36912179	44	2.9	45	76	4	127	26	20	21	31	1.98
36910954--36912275	143	9.3	143	88	0	1869	27	21	19	31	1.97
36914559--36914599	22	1.9	22	85	5	57	2	21	0	75	0.92
36914559--36914599	11	3.8	11	84	12	50	2	21	0	75	0.92
36919623--36919656	16	2.1	17	88	5	52	52	0	2	44	1.16
36919794--36919839	23	2.0	23	83	8	58	63	6	4	26	1.38
36919818--36919856	18	2.1	18	85	4	51	64	5	5	25	1.35
36924172--36924199	7	4.0	7	100	0	56	71	0	0	28	0.86
36927045--36927069	2	12.5	2	100	0	50	48	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36943901--36943967	30	2.2	30	97	0	125	32	11	14	40	1.83
36949307--36949349	18	2.4	18	88	0	59	79	2	2	16	0.95
36953921--36953965	22	2.0	24	86	8	67	33	22	8	35	1.85
36957849--36957873	13	1.9	13	100	0	50	24	24	16	36	1.94
36959808--36960213	109	3.7	108	81	7	473	23	17	16	42	1.88
36959796--36960186	82	4.8	80	83	4	471	23	16	15	43	1.87
36959796--36960253	27	16.9	27	79	8	423	23	16	16	43	1.88
36960067--36960293	27	8.4	26	83	5	139	20	18	18	41	1.90
36967145--36967210	28	2.4	27	76	5	69	25	25	27	21	1.99
36967551--36967669	26	4.4	27	74	11	84	22	17	20	39	1.92
36967551--36967708	27	5.8	26	72	12	97	23	15	20	40	1.91
36967580--36967698	55	2.2	54	87	3	168	23	15	18	42	1.89
36967580--36967812	27	8.7	26	76	8	166	22	16	20	40	1.91
36967580--36967809	54	4.3	53	76	10	184	22	16	20	40	1.91
36967746--36967829	26	3.2	25	81	8	96	19	25	19	36	1.94
36976042--36976068	6	4.5	6	100	0	54	18	0	0	81	0.69
36979240--36979271	16	1.9	17	93	6	57	12	25	18	43	1.85
36983796--36983843	21	2.2	23	88	7	73	31	6	10	52	1.60
36983806--36983849	21	2.1	21	87	8	63	31	6	9	52	1.59
36987103--36987289	29	6.3	30	75	10	170	37	12	28	21	1.90
36987224--36987288	31	2.1	31	85	2	85	46	12	21	20	1.83
36987135--36987306	91	1.9	88	82	3	209	36	13	27	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36987135--36987342	91	2.3	88	79	6	204	36	14	26	22	1.93
37003625--37003735	27	4.1	27	89	0	177	35	24	18	21	1.96
37003621--37003731	54	2.1	54	96	0	204	37	21	18	22	1.94
37003918--37003975	26	2.2	26	84	6	82	22	18	24	34	1.96
37003980--37004156	32	5.5	32	76	6	162	17	21	24	36	1.95
37003980--37004156	64	2.8	63	80	5	194	17	21	24	36	1.95
37003971--37004156	96	1.9	96	85	2	257	17	21	24	36	1.95
37007121--37007261	20	7.1	20	67	7	81	12	31	19	36	1.89
37007121--37007260	40	3.5	40	87	4	187	12	31	18	37	1.89
37010184--37010362	91	2.0	91	98	0	349	37	26	3	31	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161