genome.fa.s22.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  102  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32292414--32292446	11	3.1	11	91	4	50	66	0	24	9	1.20
32292549--32292689	50	2.8	51	86	5	205	23	14	29	31	1.95
32295989--32296102	38	3.0	38	92	1	192	14	34	18	32	1.92
32295989--32296120	38	3.4	38	85	7	169	16	33	17	32	1.93
32298523--32298620	49	2.0	49	93	0	169	42	9	10	37	1.71
32302554--32302832	39	7.2	39	85	1	330	16	32	17	33	1.93
32302614--32302716	19	5.3	19	65	13	57	15	35	15	33	1.89
32302554--32302864	39	8.1	38	83	2	325	16	32	17	33	1.93
32302554--32302864	77	4.0	77	83	3	322	16	32	17	33	1.93
32311210--32311393	45	4.1	45	86	4	248	34	26	16	22	1.95
32319079--32319120	22	2.0	21	85	4	57	9	21	23	45	1.81
32319184--32319435	43	5.9	43	83	2	283	30	29	17	22	1.96
32319184--32319435	129	2.0	129	84	3	328	30	29	17	22	1.96
32320335--32320492	23	6.9	23	75	15	123	39	24	5	31	1.78
32320335--32320491	68	2.3	68	75	9	151	39	24	5	30	1.78
32320335--32320492	46	3.5	46	76	8	153	39	24	5	31	1.78
32339116--32339157	22	2.0	21	85	4	57	9	21	23	45	1.81
32339221--32339472	43	5.9	43	83	2	283	30	29	17	22	1.96
32339221--32339472	129	2.0	129	84	3	328	30	29	17	22	1.96
32340380--32340920	23	23.7	23	71	11	317	40	23	5	31	1.76
32340374--32340678	137	2.2	137	90	2	470	40	22	5	32	1.76
32340374--32340818	137	3.2	136	82	7	429	40	23	5	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32340374--32340920	91	6.0	91	72	12	340	40	23	5	31	1.76
32340500--32340894	114	3.5	114	93	1	659	40	23	5	30	1.78
32345550--32345793	41	6.0	41	88	0	335	31	26	20	21	1.98
32345550--32345793	82	3.0	82	90	1	373	31	26	20	21	1.98
32345828--32345920	39	2.3	39	82	10	100	20	21	19	38	1.93
32349509--32349810	41	7.4	41	79	7	319	35	16	28	19	1.93
32349518--32349581	21	3.1	21	69	13	60	37	15	28	18	1.92
32351212--32351317	53	2.0	53	96	0	194	28	22	21	27	1.99
32361128--32361224	48	2.0	48	91	0	158	57	22	8	11	1.60
32379854--32380031	27	6.6	27	83	3	205	26	15	28	29	1.96
32379855--32380010	82	1.9	81	88	3	233	26	15	28	29	1.96
32379851--32380031	82	2.2	81	83	2	229	27	15	27	29	1.96
32387917--32388094	27	6.6	27	83	3	205	26	15	28	29	1.96
32387918--32388073	82	1.9	81	88	3	233	26	15	28	29	1.96
32387914--32388094	82	2.2	81	83	2	229	27	15	27	29	1.96
32407606--32407652	21	2.2	20	78	10	58	12	14	31	40	1.84
32416795--32417026	116	2.0	115	96	0	428	40	18	14	27	1.89
32420607--32420693	26	3.3	26	77	3	95	42	24	17	16	1.88
32420607--32420706	52	1.9	52	87	4	148	43	24	17	16	1.88
32420911--32421174	27	9.8	27	74	11	184	23	16	20	39	1.92
32420910--32421182	54	5.1	53	81	5	289	23	16	21	38	1.92
32420911--32421175	81	3.3	81	83	3	302	23	16	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32421140--32421250	27	4.1	27	73	6	82	18	17	20	43	1.88
32423900--32424093	50	3.9	50	86	0	253	21	30	21	27	1.98
32427848--32428090	50	4.8	50	84	2	317	20	31	21	25	1.98
32428185--32428215	13	2.4	13	94	0	53	54	12	0	32	1.38
32428413--32428469	29	1.9	29	85	3	78	28	22	10	38	1.87
32429980--32430336	27	13.2	27	78	6	301	39	19	16	24	1.92
32429980--32430326	81	4.3	81	78	5	344	39	20	15	24	1.92
32429980--32430336	54	6.6	54	78	3	342	39	19	16	24	1.92
32430463--32430520	27	2.2	26	87	9	82	18	25	22	32	1.97
32434794--32436665	623	3.0	623	100	0	3744	37	18	19	25	1.94
32451243--32451351	27	4.1	27	78	4	105	18	13	20	47	1.82
32456279--32456338	19	3.2	19	75	11	61	13	10	6	70	1.34
32457563--32457605	17	2.4	18	92	3	70	16	4	4	74	1.16
32460747--32460824	41	1.9	41	89	5	122	25	23	21	29	1.99
32462466--32462762	43	6.9	43	87	2	382	26	28	18	25	1.98
32462851--32462884	16	2.1	16	94	0	59	64	0	0	35	0.94
32462839--32462880	22	1.9	22	85	9	59	69	0	0	30	0.89
32464236--32464348	40	2.8	41	76	4	106	38	18	21	22	1.94
32464408--32464684	41	6.8	41	82	2	324	19	19	27	33	1.96
32464409--32464684	82	3.4	82	83	2	358	19	19	27	33	1.96
32467707--32468213	49	10.6	49	95	3	860	32	8	29	29	1.86
32467707--32468213	145	3.5	143	95	3	862	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32470345--32470419	38	2.0	38	86	5	107	30	18	26	24	1.98
32470473--32470654	40	4.6	40	90	0	285	24	21	27	25	2.00
32470559--32470750	96	2.0	96	96	0	357	26	22	25	26	2.00
32470532--32470787	136	1.9	136	88	1	388	26	21	25	27	1.99
32470492--32470818	176	1.9	176	93	0	564	25	20	26	27	1.99
32470668--32470836	40	4.2	40	87	0	239	25	20	27	26	1.99
32481419--32481458	15	2.8	14	85	7	53	27	0	22	50	1.50
32481911--32481950	20	2.0	21	90	5	64	27	45	0	27	1.54
32482057--32482105	24	2.0	24	100	0	98	8	22	8	61	1.51
32486112--32486177	35	1.9	34	84	9	89	37	3	1	57	1.23
32486260--32486303	17	2.6	17	85	0	52	47	0	4	47	1.22
32486301--32486432	43	3.1	43	86	3	178	23	15	30	31	1.95
32489090--32489133	22	1.9	24	86	9	65	40	2	36	20	1.65
32489948--32490023	21	3.6	21	87	0	89	31	47	1	19	1.58
32489958--32490010	7	7.6	7	97	0	97	30	52	0	16	1.44
32489999--32490147	66	2.2	69	85	7	207	45	25	1	27	1.61
32490655--32490849	81	2.4	80	84	4	246	29	29	20	20	1.97
32490663--32490850	41	4.6	41	82	4	218	30	29	19	20	1.97
32502696--32502737	12	3.5	12	90	0	66	28	38	23	9	1.86
32506636--32506887	109	2.3	110	84	3	319	28	17	22	32	1.96
32506636--32506958	109	2.9	109	80	4	310	27	17	21	32	1.96
32510212--32510243	15	2.1	15	94	0	55	71	6	3	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32512295--32512340	6	7.5	6	84	15	51	78	0	6	15	0.95
32521374--32521458	6	14.8	6	84	9	99	21	25	0	52	1.46
32521371--32521478	29	3.9	28	80	13	118	22	22	0	55	1.44
32521374--32521458	24	3.7	23	84	9	111	21	25	0	52	1.46
32521450--32521525	20	3.7	20	72	16	57	31	10	0	57	1.32
32521451--32521539	23	4.1	21	72	15	74	28	11	0	60	1.31
32521531--32521567	19	1.9	19	94	0	65	29	18	0	51	1.47
32521573--32521597	13	1.9	13	100	0	50	20	8	0	72	1.10
32521745--32521787	21	2.0	21	86	8	61	34	6	0	58	1.25
32522012--32522284	27	10.9	26	65	20	106	24	12	0	62	1.32
32522012--32522253	49	5.0	48	86	7	339	24	12	0	62	1.29
32522102--32522150	20	2.4	21	87	12	68	24	8	0	67	1.18
32522019--32522253	96	2.4	95	86	8	332	24	12	0	63	1.28
32522020--32522252	24	9.9	22	67	17	112	24	12	0	63	1.28
32522028--32522308	77	3.8	75	77	16	316	24	12	0	61	1.36
32525656--32525865	113	1.9	110	83	6	271	32	21	19	26	1.97
32527593--32527913	41	7.9	41	86	4	418	18	21	28	31	1.97
32528729--32528803	21	3.5	22	75	8	75	28	0	30	41	1.56
32528745--32528785	14	2.9	15	82	10	59	29	0	31	39	1.57
32528798--32528860	22	2.9	22	85	4	74	19	0	42	38	1.51
32528891--32528933	11	3.8	12	78	9	54	30	0	0	69	0.88
32528890--32528943	23	2.3	24	84	6	76	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32529109--32529149	21	2.0	20	85	4	55	19	0	41	39	1.52
32529123--32529170	21	2.3	20	79	10	51	22	0	41	35	1.54
32529894--32529937	22	2.0	22	82	8	54	27	40	4	27	1.75
32530134--32530159	9	2.9	9	100	0	52	34	11	30	23	1.90
32530247--32530292	19	2.4	19	85	3	56	21	0	6	71	1.08
32531792--32531979	43	4.4	43	91	0	277	23	17	30	28	1.97
32534291--32534354	26	2.5	26	97	0	119	20	29	26	23	1.99
32537377--32537405	14	2.1	14	100	0	58	51	6	0	41	1.28
32540545--32540809	83	3.2	83	85	2	338	27	21	16	35	1.94
32540743--32541047	119	2.6	119	88	1	432	30	19	16	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161