genome.fa.s22.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  18  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6069551--6070174	169	3.7	169	92	1	1018	26	27	17	28	1.97
6070208--6070311	34	3.0	34	84	4	109	29	24	20	25	1.99
6070293--6070440	44	3.4	43	89	3	208	31	23	20	25	1.98
6072696--6072726	12	2.6	12	100	0	62	0	12	0	87	0.55
6078248--6078286	9	3.8	10	86	13	53	79	7	0	12	0.93
6078719--6078776	28	2.0	31	86	10	86	48	0	8	43	1.34
6078760--6078787	3	9.3	3	100	0	56	67	0	0	32	0.91
6080199--6080223	13	1.9	13	100	0	50	64	0	4	32	1.12
6080245--6080269	12	2.1	12	100	0	50	76	0	16	8	1.02
6085014--6085053	21	1.9	21	85	10	55	42	0	5	52	1.23
6085692--6085736	23	2.0	23	100	0	90	66	0	6	26	1.16
6085970--6085997	2	14.0	2	100	0	56	0	50	0	50	1.00
6096609--6096651	14	3.2	13	84	12	52	55	2	2	39	1.25
6105851--6105886	10	3.7	10	85	7	56	77	11	0	11	0.99
6105930--6106001	27	2.7	27	75	0	81	26	30	31	11	1.91
6106415--6106663	39	6.5	40	67	25	146	63	7	4	24	1.40
6106433--6106693	30	9.4	30	79	16	257	62	8	4	24	1.42
6106456--6106628	12	12.8	12	69	25	89	64	7	3	24	1.35
6106429--6106667	80	3.0	81	83	9	287	63	7	4	24	1.41
6106433--6106693	110	2.4	110	97	1	497	62	8	4	24	1.42
6106633--6106683	16	3.3	16	71	20	54	54	11	7	25	1.63
6106886--6106977	27	3.4	27	93	0	148	7	36	29	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6107028--6107075	11	4.6	10	80	15	53	16	0	10	72	1.10
6128226--6128464	50	4.7	50	77	7	162	28	18	29	23	1.98
6135939--6136188	82	3.1	81	62	24	177	45	4	4	46	1.40
6135942--6136251	157	2.0	157	93	0	530	47	5	3	43	1.42
6136381--6136448	16	4.2	16	94	0	118	38	33	0	27	1.57
6145768--6145863	49	2.0	49	85	0	129	40	10	16	32	1.83
6148678--6148729	23	2.3	23	80	9	63	36	13	11	38	1.81
6149243--6149291	16	3.1	16	77	16	57	26	22	36	14	1.92
6150036--6150078	3	14.3	3	100	0	86	34	0	0	65	0.93
6150673--6150729	29	1.9	29	82	3	69	38	3	8	49	1.51
6151424--6151466	14	3.1	15	83	12	56	67	0	0	32	0.91
6154619--6154818	99	2.0	99	98	0	382	38	13	15	32	1.86
6155832--6155866	18	2.0	18	88	5	54	25	2	0	71	1.00
6157164--6157206	2	21.5	2	95	0	77	48	0	48	2	1.14
6158989--6159030	12	3.1	13	83	16	50	59	0	40	0	0.97
6158987--6159029	8	6.1	7	92	7	54	58	0	41	0	0.98
6159196--6159239	6	7.3	6	92	7	72	0	13	0	86	0.57
6161400--6161569	38	4.5	38	88	2	236	30	19	16	34	1.94
6161400--6161569	76	2.2	76	90	2	261	30	19	16	34	1.94
6162605--6162633	4	7.2	4	100	0	58	27	0	0	72	0.85
6170526--6170688	5	31.0	5	78	9	164	35	20	2	41	1.66
6170518--6170683	22	7.8	22	76	14	100	35	20	2	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6175018--6175307	44	6.7	45	76	10	239	28	26	16	28	1.97
6175018--6175307	88	3.4	88	80	4	272	28	26	16	28	1.97
6175192--6175270	38	2.1	38	85	0	104	26	22	17	32	1.96
6175018--6175309	126	2.3	128	85	5	376	29	26	16	28	1.97
6175307--6175807	88	5.7	88	87	0	696	24	26	22	26	2.00
6175342--6175749	44	9.3	44	66	4	230	26	27	21	24	1.99
6177052--6177087	16	2.2	16	90	9	56	0	16	0	83	0.65
6181020--6181057	3	12.7	3	100	0	76	68	0	0	31	0.90
6186348--6186402	6	9.5	6	96	4	96	16	0	16	67	1.24
6193075--6193225	59	2.6	56	86	9	196	40	12	13	33	1.83
6193021--6193227	58	3.6	57	79	10	222	39	13	15	32	1.86
6200155--6200186	16	2.1	15	94	5	55	21	6	34	37	1.79
6203127--6203160	16	2.1	16	100	0	68	11	26	23	38	1.89
6204479--6204517	20	1.9	21	84	5	53	61	7	10	20	1.52
6207538--6207715	27	6.6	27	83	3	205	26	15	28	29	1.96
6207539--6207694	82	1.9	81	88	3	233	26	15	28	29	1.96
6207535--6207715	82	2.2	81	83	2	229	27	15	27	29	1.96
6210987--6211025	20	2.0	19	85	5	51	66	10	0	23	1.22
6211107--6211759	152	4.3	151	88	4	863	30	9	7	52	1.61
6211765--6212183	150	2.8	151	88	2	614	54	6	6	32	1.53
6212541--6212657	10	11.5	10	66	25	50	67	0	1	30	1.01
6212535--6212596	32	1.9	32	87	6	90	62	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6212535--6212648	42	2.7	42	94	1	201	64	0	1	34	1.04
6212626--6212657	9	3.4	9	95	4	55	81	0	0	18	0.70
6212584--6212689	49	2.1	52	92	5	182	66	0	2	30	1.05
6218636--6218724	40	2.1	42	82	10	103	32	10	1	56	1.40
6219224--6219254	6	5.3	6	96	3	55	12	0	16	70	1.16
6220669--6220707	15	2.6	15	80	15	53	58	7	7	25	1.52
6222567--6222788	44	5.0	44	71	16	165	27	23	18	30	1.98
6222586--6223437	89	9.8	88	67	15	351	28	23	18	29	1.98
6222626--6223525	217	4.1	217	93	1	1428	29	23	18	29	1.98
6222849--6223178	173	1.9	173	80	9	379	28	23	19	28	1.98
6222623--6223525	44	20.8	44	71	15	406	29	23	18	29	1.98
6235453--6235491	15	2.6	15	80	15	53	58	7	7	25	1.52
6241408--6241453	16	2.9	16	84	9	60	54	0	4	41	1.20
6243122--6243183	24	2.6	24	86	0	79	35	3	29	32	1.73
6244052--6244142	42	2.2	42	93	0	155	20	20	19	38	1.94
6244461--6244522	21	3.0	21	82	0	79	4	50	19	25	1.67
6250034--6250239	9	24.2	9	69	15	109	33	1	19	44	1.62
6250027--6250089	32	2.0	32	90	6	101	30	3	19	47	1.64
6250310--6250361	22	2.4	21	87	3	68	38	1	19	40	1.63
6250357--6250394	7	5.6	7	82	17	53	28	0	13	57	1.36
6250342--6250414	27	2.7	26	70	6	74	36	1	13	47	1.52
6250406--6250491	21	4.0	22	72	19	67	34	2	13	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6250399--6250542	50	3.2	42	69	21	119	35	3	13	47	1.61
6250452--6250497	7	6.6	7	78	16	51	28	0	10	60	1.30
6250310--6250576	95	2.8	95	90	1	401	35	3	14	46	1.63
6250452--6250497	15	3.3	15	79	17	62	28	0	10	60	1.30
6250694--6250735	19	2.2	20	83	12	52	57	2	0	40	1.12
6250722--6250869	61	2.4	61	80	4	174	46	8	4	41	1.52
6250800--6250839	16	2.6	15	76	7	53	47	7	0	45	1.31
6250848--6250880	17	1.9	17	93	0	57	51	9	3	36	1.49
6252525--6252564	20	2.0	20	100	0	80	40	5	45	10	1.60
6255510--6255767	113	2.3	112	81	6	306	26	21	17	34	1.96
6257393--6257418	7	3.7	7	100	0	52	61	0	0	38	0.96
6268599--6268637	16	2.4	17	83	12	55	38	0	0	61	0.96
6276553--6276606	28	1.9	28	85	14	76	29	20	16	33	1.95
6276577--6276763	106	1.8	101	83	8	250	28	24	14	31	1.95
6277817--6277918	53	1.9	53	91	0	168	33	16	10	39	1.84
6284874--6284918	19	2.3	20	81	14	58	40	2	6	51	1.41
6285894--6285918	12	2.1	12	100	0	50	36	40	16	8	1.77
6285908--6286068	43	3.7	43	89	4	225	23	26	19	29	1.98
6292993--6293373	114	3.3	112	85	5	503	26	26	20	25	1.99
6293270--6293442	73	2.4	72	90	0	265	24	26	23	26	2.00
6293156--6293602	186	2.4	186	88	0	660	26	25	21	27	1.99
6293347--6293557	113	1.9	115	92	2	345	27	27	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6293459--6293714	85	3.3	73	80	13	307	24	25	22	27	2.00
6293615--6293826	113	1.9	113	93	0	370	24	27	23	24	2.00
6301975--6302057	27	2.9	28	72	13	78	50	2	6	40	1.40
6302016--6302055	21	1.9	21	85	10	55	47	0	7	45	1.31
6302016--6302062	21	2.4	20	76	13	53	46	0	6	46	1.28
6302053--6302173	10	12.4	10	68	21	53	59	3	4	33	1.33
6302122--6302179	9	6.2	9	78	6	53	67	1	1	29	1.11
6302844--6302877	16	2.1	16	88	0	50	32	2	0	64	1.08
6304569--6304602	14	2.3	15	90	5	52	41	0	17	41	1.50
6310866--6310918	26	2.0	26	85	0	70	45	11	16	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161