genome.fa.s22.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  32  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9867862--9868070	52	4.1	51	85	9	275	35	13	22	27	1.93
9867848--9868070	98	2.3	97	80	9	231	34	13	22	28	1.93
9867966--9868181	37	5.3	44	86	9	190	37	14	22	26	1.92
9868034--9868179	37	4.0	37	91	1	233	36	15	22	24	1.93
9869095--9869135	14	3.0	15	86	13	54	7	14	0	78	0.96
9869095--9869137	13	3.2	13	81	12	52	6	16	0	76	0.99
9869892--9869921	5	6.2	5	92	7	53	40	0	0	60	0.97
9872892--9873763	131	6.7	131	92	0	1406	30	21	24	23	1.99
9873745--9874131	44	8.3	44	72	17	300	32	18	21	27	1.97
9873798--9873979	98	1.9	97	80	6	215	32	18	19	29	1.96
9873754--9874182	142	3.0	142	96	0	786	33	18	20	27	1.96
9873940--9874121	98	1.9	97	80	6	215	32	19	20	27	1.97
9874054--9874209	44	3.6	42	77	9	138	30	19	21	28	1.98
9883552--9883591	17	2.4	17	87	8	55	77	0	7	15	0.98
9883624--9883677	28	2.0	27	85	3	72	68	1	3	25	1.16
9897863--9898416	114	4.9	112	80	8	543	23	23	25	27	2.00
9898701--9898762	7	8.4	7	79	10	70	12	1	35	50	1.51
9898701--9898762	15	4.2	15	82	10	74	12	1	35	50	1.51
9898699--9898762	22	2.9	22	86	9	85	14	1	35	48	1.53
9899888--9899913	9	2.9	9	100	0	52	19	0	46	34	1.50
9899825--9899918	39	2.4	40	83	7	138	19	2	39	39	1.63
9903026--9903186	12	14.0	12	65	27	66	45	1	3	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9903115--9903185	34	2.0	36	84	10	94	47	0	2	49	1.16
9903026--9903233	92	2.3	92	97	0	391	45	1	3	49	1.29
9903317--9903400	43	2.0	43	85	0	114	48	25	0	26	1.51
9903405--9903706	26	11.4	26	87	8	409	47	19	0	32	1.53
9903636--9903663	13	2.2	13	100	0	56	39	25	0	35	1.56
9903661--9903708	25	2.0	23	88	8	69	47	20	0	31	1.50
9909172--9909337	66	2.5	65	82	4	190	40	18	25	14	1.89
9909322--9909365	21	2.1	21	91	0	70	34	18	43	4	1.70
9909372--9909426	20	2.7	20	88	2	83	36	14	43	5	1.69
9909841--9909940	43	2.3	43	93	3	166	34	30	18	18	1.94
9909867--9910001	43	3.2	43	81	3	139	26	28	21	22	1.99
9912315--9912490	41	4.3	41	93	0	298	23	27	19	28	1.98
9912660--9912836	41	4.3	41	91	0	291	24	27	19	29	1.98
9919516--9919562	22	2.0	24	84	8	62	55	12	10	21	1.67
9923705--9923765	29	2.1	29	100	0	122	16	21	21	40	1.91
9928019--9928059	15	2.5	17	80	11	59	65	0	0	34	0.93
9930695--9930763	29	2.3	30	78	14	72	44	5	14	34	1.69
9931216--9931255	20	2.1	18	86	9	53	35	0	0	65	0.93
9931293--9931332	21	1.9	21	84	0	53	35	0	2	62	1.09
9934390--9934425	19	2.0	18	89	10	56	72	0	0	27	0.85
9936290--9936329	16	2.5	16	87	0	53	47	0	12	40	1.41
9936360--9936417	24	2.3	26	80	17	68	58	10	5	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9937122--9937147	11	2.4	11	100	0	52	92	0	7	0	0.39
9938292--9938350	19	3.1	19	71	9	57	28	11	10	49	1.72
9938272--9938350	38	2.1	39	92	2	133	29	12	7	50	1.68
9940408--9940444	17	2.2	17	90	9	58	75	0	5	18	0.99
9944220--9944295	38	2.0	38	97	0	143	39	19	23	17	1.92
9946335--9946695	179	2.0	178	89	2	555	36	18	14	30	1.91
9954532--9954557	12	2.2	12	100	0	52	23	19	23	34	1.96
9962415--9962470	17	3.3	17	87	0	85	42	7	0	50	1.30
9965944--9965986	21	2.0	21	100	0	86	41	13	0	44	1.44
9968802--9968855	18	3.1	17	81	7	63	37	18	0	44	1.50
9969979--9970050	33	2.2	32	88	11	103	51	6	1	40	1.37
9970119--9970171	8	6.4	8	85	8	52	64	1	0	33	1.05
9970052--9970299	123	2.0	123	96	0	460	40	9	1	48	1.44
9970232--9970288	29	2.0	29	89	6	89	52	3	0	43	1.18
9971063--9971172	57	1.9	57	84	1	148	48	7	15	29	1.72
9972748--9972971	110	2.0	110	89	0	340	29	16	16	37	1.91
9976330--9976384	9	6.1	9	91	0	92	45	12	12	29	1.79
9978268--9978319	26	2.0	26	88	0	77	21	17	34	26	1.95
9981775--9981804	9	3.3	9	90	0	51	53	13	3	30	1.56
9985609--9985659	21	2.4	21	86	0	66	25	0	3	70	1.04
9988991--9989015	13	1.9	13	100	0	50	40	12	0	48	1.40
9990694--9990761	34	2.0	34	100	0	136	17	17	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9991300--9991350	22	2.3	22	83	10	59	60	0	7	31	1.25
9991977--9992012	18	2.0	18	100	0	72	38	33	11	16	1.84
9998859--9998902	21	2.1	21	86	0	61	68	4	0	27	1.09
10003829--10003895	32	2.1	32	100	0	134	23	13	25	37	1.92
10024427--10024465	20	2.0	20	85	10	53	46	0	12	41	1.42
10031540--10031653	50	2.3	51	90	1	176	35	14	23	27	1.93
10033288--10033339	20	2.6	21	84	6	72	44	7	9	38	1.66
10050292--10050317	6	4.3	6	100	0	52	0	50	0	50	1.00
10055450--10055479	16	1.9	15	93	6	51	46	0	0	53	1.00
10065458--10065512	18	3.3	17	73	14	53	72	1	9	16	1.18
10068717--10069048	174	1.9	170	86	6	463	31	20	21	26	1.98
10070695--10070740	22	2.0	23	83	4	58	39	6	2	52	1.40
10070706--10070750	22	2.0	22	83	8	56	35	11	0	53	1.37
10070842--10070896	24	2.2	24	83	3	74	41	5	1	50	1.36
10075606--10075640	18	1.9	18	88	0	52	68	14	0	17	1.21
10079315--10079348	12	2.8	12	95	4	59	50	0	8	41	1.34
10081409--10081517	37	2.9	37	91	0	164	22	19	31	27	1.97
10082729--10082762	12	2.8	12	95	4	59	50	0	8	41	1.34
10088089--10088123	17	2.1	17	100	0	70	5	0	17	77	0.96
10091797--10091862	5	14.0	5	79	17	79	37	0	1	60	1.06
10092678--10092731	21	2.6	21	84	0	63	37	0	3	59	1.15
10097579--10098118	289	1.9	287	86	3	780	21	23	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10103677--10103784	9	11.4	9	71	16	69	27	3	0	67	1.13
10110942--10110966	10	2.5	10	100	0	50	48	8	0	44	1.32
10111275--10111335	31	2.0	31	86	0	86	22	19	26	31	1.98
10112365--10112404	20	2.0	20	90	0	62	27	37	12	22	1.90
10114346--10114434	23	3.8	23	70	14	56	30	5	3	60	1.36
10114675--10114706	15	2.1	16	88	11	50	21	0	3	75	0.95
10117494--10117537	22	2.0	22	100	0	88	36	9	22	31	1.86
10118847--10118905	29	2.0	30	83	3	75	27	5	15	52	1.63
10121132--10121182	22	2.3	22	83	6	59	13	25	17	43	1.86
10121143--10121185	22	2.0	22	90	9	70	16	23	18	41	1.89
10134561--10134627	22	3.0	22	86	0	98	14	23	17	43	1.87
10140367--10140457	41	2.2	41	76	7	96	32	9	3	53	1.50
10140741--10140779	16	2.4	16	82	0	51	33	7	5	53	1.51
10140888--10140964	4	18.8	4	74	14	59	20	5	5	68	1.29
10141095--10141423	108	3.1	108	94	1	547	28	14	18	37	1.91
10142319--10142359	17	2.4	17	84	11	57	39	2	0	58	1.11
10143195--10143237	3	14.3	3	100	0	86	32	0	0	67	0.91
10143828--10144045	109	2.0	110	91	0	357	42	6	14	36	1.72
10146166--10146217	20	2.3	23	78	15	56	51	1	1	44	1.23
10146414--10146467	19	2.9	17	79	15	54	53	3	0	42	1.18
10156132--10156199	24	2.8	25	80	13	86	14	25	20	39	1.91
10156248--10156290	22	2.0	22	95	0	77	9	20	27	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10156428--10156653	43	5.3	43	75	3	186	25	30	19	24	1.98
10156428--10156653	86	2.6	85	81	5	267	25	30	19	24	1.98
10157003--10157074	21	3.4	21	84	0	90	4	43	16	36	1.68
10157003--10157094	21	4.4	21	85	0	85	4	41	17	36	1.69
10157065--10157230	66	2.5	66	85	3	210	12	28	18	39	1.88
10162653--10163134	9	55.2	9	68	20	142	39	1	13	46	1.51
10162658--10162777	16	7.9	16	69	19	96	35	1	17	45	1.58
10162672--10162826	25	6.2	25	76	11	120	37	1	15	45	1.58
10162833--10162865	16	2.1	16	100	0	66	30	0	24	45	1.53
10162729--10162870	25	5.6	25	71	17	89	38	1	16	42	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161