genome.fa.s22.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  158  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49242827--49242856	14	2.1	14	100	0	60	33	46	13	6	1.69
49245313--49245349	18	2.1	18	89	0	56	21	5	13	59	1.54
49249920--49249964	23	2.0	23	86	0	63	20	13	33	33	1.91
49252177--49252237	32	1.9	32	89	0	95	39	9	18	32	1.83
49255482--49255993	261	2.0	261	94	1	911	27	22	12	37	1.91
49261665--49261721	3	19.3	3	94	3	98	64	0	1	33	1.04
49263627--49263665	20	2.0	20	85	5	53	25	17	20	35	1.95
49281108--49281166	29	2.0	31	83	6	77	38	0	40	20	1.53
49284992--49285042	15	3.2	16	81	13	70	66	0	3	29	1.09
49290709--49290738	3	10.0	3	100	0	60	33	0	33	33	1.58
49291831--49291856	5	5.2	5	100	0	52	42	0	57	0	0.98
49292618--49292657	6	6.7	6	94	0	71	32	0	65	2	1.06
49296677--49296988	156	2.0	156	93	2	529	38	15	12	33	1.85
49296964--49297058	36	2.6	36	77	9	95	31	15	7	45	1.74
49303835--49303938	41	2.5	42	83	9	124	35	24	19	21	1.96
49304983--49305142	41	3.9	41	91	3	257	36	23	19	20	1.95
49304983--49305142	84	1.9	82	91	2	257	36	23	19	20	1.95
49307844--49307888	24	1.9	24	90	4	74	44	0	44	11	1.39
49310131--49310172	13	3.2	13	93	0	75	21	14	11	52	1.73
49315844--49315885	18	2.3	19	84	12	52	19	23	2	54	1.55
49330903--49330947	22	2.0	23	87	8	67	37	22	4	35	1.74
49333155--49333257	51	2.0	51	92	0	170	42	5	18	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49334811--49335609	141	5.7	140	85	3	965	28	15	22	33	1.95
49335736--49335805	7	10.7	7	73	14	69	12	0	44	42	1.42
49336786--49336884	35	2.8	35	82	0	126	17	41	18	23	1.90
49338535--49338560	12	2.2	12	100	0	52	34	34	30	0	1.58
49346028--49346067	18	2.2	18	100	0	80	22	15	27	35	1.94
49350052--49350138	45	1.9	45	90	0	138	31	9	19	40	1.83
49350493--49350960	73	6.4	73	81	0	479	27	21	14	36	1.92
49350447--49350965	36	14.3	36	71	14	226	27	20	15	36	1.92
49350490--49350960	219	2.2	219	81	4	531	27	21	14	36	1.92
49355080--49355126	19	2.5	19	96	0	85	14	36	21	27	1.93
49368334--49368428	34	2.8	33	79	7	109	29	23	25	22	1.99
49371541--49371645	39	2.7	39	85	2	131	22	23	28	24	1.99
49376741--49376820	23	3.3	24	82	10	74	35	22	20	22	1.96
49376762--49376830	23	2.9	24	86	2	95	37	18	21	21	1.94
49378360--49378448	20	4.4	20	70	14	67	43	19	25	11	1.84
49378484--49378578	47	2.0	47	97	0	181	31	20	10	37	1.86
49380657--49380741	6	14.2	6	92	0	125	20	3	16	60	1.51
49394389--49394416	7	4.0	7	100	0	56	28	0	14	57	1.38
49397638--49397701	31	2.1	29	82	5	74	37	14	9	39	1.78
49403111--49403227	57	2.1	57	86	3	164	29	16	12	41	1.85
49406330--49406422	43	2.1	43	94	2	159	27	21	19	31	1.97
49411440--49411486	22	2.2	22	88	3	69	14	12	4	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49411446--49411487	22	1.9	22	95	0	75	14	9	4	71	1.28
49412103--49412147	20	2.2	20	84	0	54	55	17	6	20	1.64
49418195--49418328	46	3.0	45	80	4	126	33	13	24	28	1.93
49420756--49420801	19	2.3	20	85	14	69	67	0	2	30	1.03
49431148--49431412	103	2.6	104	91	3	426	19	20	30	29	1.97
49445714--49445755	11	4.0	11	84	9	61	73	2	0	23	0.94
49446073--49446150	9	8.6	9	72	16	54	33	1	3	61	1.22
49446073--49446123	18	2.7	19	79	14	61	35	0	3	60	1.15
49446073--49446156	27	3.2	26	81	10	82	32	1	3	63	1.19
49447121--49447164	23	1.9	23	86	9	63	54	6	11	27	1.61
49447255--49447279	13	1.9	13	100	0	50	68	0	8	24	1.16
49447344--49447463	27	4.5	27	71	13	81	58	3	7	30	1.42
49447393--49447456	25	2.4	25	82	12	67	56	6	9	28	1.55
49447593--49447633	15	2.9	14	79	20	50	70	2	0	26	0.99
49452097--49452141	23	2.0	23	90	0	72	44	2	6	46	1.42
49460810--49460861	26	2.0	27	85	14	74	11	15	11	61	1.57
49460989--49461084	49	2.0	49	85	4	131	42	5	15	36	1.70
49462114--49462173	3	20.0	3	92	0	102	63	0	33	3	1.11
49463232--49463271	3	13.3	3	89	0	53	42	0	25	32	1.55
49463235--49463271	15	2.5	15	95	0	65	43	0	24	32	1.55
49463232--49463271	18	2.2	18	95	0	71	42	0	25	32	1.55
49463569--49463595	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49468340--49468423	41	2.0	41	97	0	159	40	8	20	30	1.82
49469300--49469363	32	2.0	32	96	0	119	23	12	12	51	1.73
49483079--49483126	18	2.7	18	76	0	60	66	0	0	33	0.92
49486908--49486973	23	3.0	22	76	12	64	27	21	15	36	1.93
49489588--49489649	30	2.1	30	93	0	106	59	14	1	24	1.44
49494856--49494891	3	12.0	3	100	0	72	66	0	0	33	0.92
49499085--49499123	20	2.0	20	85	10	53	35	0	7	56	1.28
49502856--49502897	22	1.9	22	90	9	68	0	21	0	78	0.75
49502859--49502897	13	3.1	12	82	10	51	0	20	0	79	0.73
49512234--49512377	48	3.0	49	77	11	145	22	16	25	36	1.94
49520142--49520309	37	4.5	37	82	5	205	19	11	26	42	1.84
49520156--49520320	74	2.2	74	88	5	237	18	10	27	43	1.83
49522290--49522341	21	2.3	21	80	9	59	38	3	11	46	1.59
49522301--49522341	21	1.9	22	90	5	66	36	4	9	48	1.58
49525335--49526011	339	2.0	336	95	3	1227	17	31	11	39	1.85
49532722--49532898	88	2.0	89	83	7	225	47	11	17	23	1.80
49538949--49538981	17	2.0	17	94	5	59	36	15	0	48	1.45
49539262--49539535	46	6.0	46	92	0	388	21	24	14	40	1.90
49542609--49542670	27	2.3	26	76	13	63	38	1	11	48	1.49
49555397--49555453	20	2.9	19	80	12	62	56	0	5	38	1.22
49555398--49555457	29	2.1	28	82	14	70	55	0	5	40	1.22
49555418--49555485	29	2.3	29	85	5	84	52	0	1	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49556912--49556954	16	2.5	18	81	11	54	55	6	0	37	1.27
49567699--49567751	20	2.8	18	83	16	63	35	1	0	62	1.06
49570052--49570084	3	11.0	3	100	0	66	66	0	0	33	0.92
49572392--49572422	14	2.2	14	94	0	53	12	9	0	77	0.99
49580903--49580935	16	2.1	16	88	11	50	57	6	9	27	1.53
49582406--49582705	84	3.6	84	87	6	387	20	22	20	37	1.95
49582434--49582572	43	3.2	43	66	16	108	20	21	20	36	1.95
49582551--49582696	40	3.5	40	67	18	111	17	25	21	34	1.96
49582915--49583056	44	3.2	44	74	9	144	32	19	22	25	1.98
49582657--49583011	177	2.0	177	88	3	527	27	22	20	29	1.98
49583185--49583312	64	2.0	64	86	3	177	39	12	17	31	1.87
49583948--49584038	48	1.9	47	88	2	137	8	29	16	45	1.78
49596270--49596302	16	2.1	16	88	11	50	57	6	9	27	1.53
49599054--49599091	19	2.1	19	85	5	51	60	7	5	26	1.46
49599337--49599390	22	2.3	24	84	9	67	57	3	1	37	1.27
49601331--49601360	13	2.4	13	94	5	53	60	6	0	33	1.23
49610241--49610282	18	2.5	18	81	11	54	33	0	4	61	1.17
49610373--49610420	16	3.1	16	81	3	62	66	0	0	33	0.92
49611065--49611113	18	2.7	18	84	12	64	57	2	2	38	1.22
49612908--49612949	2	21.0	2	100	0	84	50	0	50	0	1.00
49613607--49613632	6	4.3	6	100	0	52	34	19	15	30	1.93
49628032--49628082	21	2.5	20	81	6	59	49	1	0	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49628054--49628126	32	2.4	29	78	17	76	56	1	2	39	1.22
49628786--49628812	6	4.5	6	100	0	54	0	14	48	37	1.45
49638993--49639126	46	2.9	46	79	2	142	32	20	19	28	1.97
49640121--49640181	31	2.0	31	90	6	97	27	31	18	22	1.97
49640277--49640473	35	5.6	35	81	3	209	34	22	10	31	1.89
49640277--49640473	105	1.9	105	82	2	252	34	22	10	31	1.89
49644616--49644673	25	2.3	27	77	19	72	58	8	0	32	1.28
49646048--49646072	13	1.9	13	100	0	50	72	28	0	0	0.86
49652544--49652581	19	2.0	19	100	0	76	36	10	0	52	1.36
49652623--49652661	19	2.1	19	90	0	60	46	7	12	33	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161