genome.fa.s22.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  155  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48209091--48209894	44	18.4	44	69	10	348	27	25	18	28	1.98
48209066--48209902	218	3.8	217	91	1	1284	27	25	18	28	1.98
48209066--48209902	435	1.9	435	89	1	1302	27	25	18	28	1.98
48211958--48211991	17	2.1	17	94	5	61	64	5	5	23	1.38
48214817--48214869	23	2.4	22	76	20	56	9	18	1	69	1.25
48217470--48217494	13	1.9	13	100	0	50	32	0	12	56	1.36
48219988--48220144	29	5.4	29	83	3	181	36	13	26	24	1.92
48219988--48220231	58	4.2	58	77	3	231	37	13	25	22	1.92
48220132--48220246	29	4.0	28	78	5	113	38	15	25	20	1.92
48220126--48220245	59	2.1	58	82	4	143	37	15	25	21	1.93
48224144--48224195	13	3.9	13	80	7	52	17	5	9	67	1.38
48228631--48229965	89	15.0	88	84	3	1292	29	23	15	30	1.95
48228631--48229965	134	10.0	133	82	3	1374	29	23	15	30	1.95
48228631--48229965	579	2.3	579	92	0	2175	29	23	15	30	1.95
48231257--48231321	28	2.3	28	85	15	89	16	21	0	61	1.34
48236127--48236170	22	2.0	23	90	4	72	61	0	6	31	1.22
48236582--48236634	3	17.0	3	81	14	63	60	0	5	33	1.20
48236582--48236634	16	3.4	16	84	10	65	60	0	5	33	1.20
48248274--48249181	47	19.3	47	99	0	1780	31	10	29	27	1.90
48249351--48249429	37	2.1	37	90	0	122	24	18	31	25	1.98
48252581--48252678	27	3.7	26	83	6	115	27	11	30	30	1.91
48263851--48263889	19	2.1	19	95	0	69	38	20	2	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48274248--48274302	21	2.5	23	77	14	62	41	1	23	32	1.65
48278739--48278804	27	2.4	27	87	0	87	27	15	25	31	1.95
48285441--48285491	25	2.0	26	88	11	79	52	1	5	39	1.37
48285442--48285506	27	2.5	26	73	9	60	49	3	9	38	1.51
48286196--48286237	20	2.2	19	87	8	59	9	16	7	66	1.42
48288726--48288768	13	3.2	13	77	6	50	25	2	13	58	1.48
48296915--48296985	29	2.4	29	100	0	142	52	15	11	21	1.74
48299958--48300047	5	18.2	5	87	6	130	36	0	2	61	1.09
48300890--48300933	3	14.7	3	85	0	52	36	0	2	61	1.09
48300892--48300949	27	2.1	27	90	6	91	39	0	3	56	1.16
48300890--48300949	18	3.3	18	74	4	50	38	0	3	58	1.15
48300898--48300949	21	2.5	21	83	0	59	40	0	3	55	1.18
48308054--48309046	47	21.1	47	98	0	1851	31	10	30	27	1.90
48309165--48309243	37	2.1	37	90	0	122	24	18	31	25	1.98
48323521--48323576	27	2.1	27	100	0	112	33	26	17	21	1.96
48331867--48331925	29	2.0	30	86	3	84	28	25	6	38	1.81
48337332--48337383	27	1.9	27	84	0	68	21	21	19	38	1.94
48337361--48337432	27	2.7	27	91	0	99	22	16	25	36	1.94
48341282--48341316	18	1.9	18	88	0	52	62	0	2	34	1.10
48342186--48342300	29	4.0	29	85	6	146	27	29	15	26	1.96
48342177--48342287	58	1.9	58	88	1	170	27	30	16	26	1.96
48345562--48345595	18	1.9	18	88	5	52	29	11	20	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48346659--48346773	29	4.0	29	84	6	137	27	28	15	27	1.96
48346650--48346758	58	1.9	58	88	1	166	26	30	16	26	1.97
48349278--48349391	57	2.0	57	83	6	142	46	6	20	27	1.74
48353876--48353911	16	2.2	17	95	5	65	47	11	8	33	1.69
48355548--48355601	26	2.1	26	93	6	92	12	20	22	44	1.85
48362546--48362665	56	2.1	56	98	0	231	45	9	23	22	1.81
48363759--48364001	120	2.0	118	85	4	328	26	20	27	25	1.99
48363704--48363968	40	6.7	40	87	4	340	24	21	27	26	1.99
48375937--48376034	48	2.1	47	96	1	178	61	14	12	12	1.58
48378684--48378721	18	2.1	18	100	0	76	21	36	21	21	1.95
48384455--48384493	13	3.0	13	92	0	60	20	25	33	20	1.97
48390452--48390486	13	2.8	12	87	12	52	14	2	2	80	0.95
48390859--48390898	20	2.0	20	100	0	80	25	20	15	40	1.90
48396413--48396500	40	2.3	38	82	7	106	34	32	13	19	1.91
48397556--48398177	311	2.0	311	94	0	1091	28	19	14	36	1.91
48398903--48399125	79	2.8	79	84	9	269	24	27	22	25	2.00
48398903--48399125	39	5.7	40	86	8	266	24	27	22	25	2.00
48406109--48406150	18	2.3	19	84	12	61	9	45	28	16	1.79
48416429--48416634	46	4.5	46	73	7	143	27	30	16	25	1.97
48416508--48416643	47	3.0	44	78	15	143	27	31	16	24	1.97
48421089--48421192	39	2.7	39	95	0	190	28	28	21	21	1.98
48428490--48428745	39	6.6	39	95	0	467	29	27	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48432463--48432586	38	3.2	37	81	6	140	23	25	23	28	2.00
48435732--48435796	28	2.3	28	91	0	103	32	27	7	32	1.85
48435902--48435992	28	3.2	28	90	4	139	20	24	23	31	1.98
48435902--48436017	56	2.1	55	82	9	137	19	24	21	34	1.96
48437076--48437109	10	3.3	10	84	8	50	29	8	8	52	1.62
48443552--48443616	28	2.3	28	89	0	94	33	27	6	32	1.82
48443722--48443812	28	3.2	28	87	4	130	20	24	21	32	1.98
48444265--48444305	18	2.3	18	86	0	55	19	2	9	68	1.29
48454655--48454679	8	3.1	8	100	0	50	76	0	0	24	0.80
48454652--48454720	29	2.3	31	80	9	81	60	5	0	33	1.20
48454958--48455040	41	2.0	41	100	0	166	26	16	4	51	1.64
48473244--48473412	48	3.6	48	76	7	161	27	16	30	26	1.97
48473241--48473412	98	1.8	92	83	9	229	26	17	30	25	1.97
48480818--48481132	47	6.7	46	71	14	191	28	18	28	24	1.98
48482228--48482267	21	2.0	21	90	5	64	10	40	27	22	1.86
48486053--48486105	25	2.1	26	83	16	67	43	1	33	20	1.63
48487461--48487508	2	24.0	2	100	0	96	0	50	0	50	1.00
48489639--48489720	42	2.0	42	87	0	119	28	13	24	34	1.93
48493175--48493231	28	2.0	28	82	0	69	33	19	26	21	1.97
48494373--48494405	15	2.3	15	89	5	50	75	6	3	15	1.11
48494934--48494983	18	2.8	18	100	0	100	44	0	0	56	0.99
48497558--48497700	9	15.2	9	66	20	53	39	2	2	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48497567--48497621	22	2.7	19	78	13	56	29	5	1	63	1.27
48497640--48497700	28	2.2	28	85	5	79	45	0	3	50	1.17
48497642--48497702	20	3.1	19	88	9	79	44	0	3	52	1.17
48497670--48497702	11	3.2	11	83	16	52	48	0	0	51	1.00
48513142--48513466	50	6.5	50	76	4	323	25	18	25	30	1.98
48513142--48513323	101	1.8	101	87	0	274	26	19	24	30	1.98
48513142--48513466	151	2.2	151	94	1	571	25	18	25	30	1.98
48515790--48516098	144	2.1	144	96	0	573	35	7	28	29	1.84
48515790--48516101	48	6.5	48	91	1	509	34	7	28	29	1.84
48516271--48516373	37	2.8	37	93	0	179	24	20	31	24	1.98
48517463--48517494	16	2.0	16	93	0	55	46	0	18	34	1.49
48519700--48519800	40	2.5	40	87	6	134	15	26	19	37	1.92
48542737--48542808	30	2.4	30	90	0	108	22	25	33	19	1.97
48557491--48557520	14	2.1	15	93	6	53	56	3	40	0	1.16
48558411--48558447	20	1.9	19	89	10	58	24	10	10	54	1.67
48560174--48560380	42	4.9	42	75	7	161	29	25	17	28	1.97
48560174--48560380	85	2.4	86	80	7	217	29	25	17	28	1.97
48563047--48563098	26	2.0	26	96	0	95	11	34	5	48	1.63
48566002--48566064	31	2.0	31	90	0	99	30	25	12	31	1.93
48572799--48572994	55	3.6	53	80	6	182	22	23	18	34	1.96
48575452--48575524	33	2.2	33	92	0	119	2	38	15	43	1.61
48581870--48581915	24	1.9	24	100	0	92	52	15	4	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48590636--48590740	39	2.6	39	86	5	122	24	22	27	24	2.00
48590596--48590740	40	3.7	40	81	12	165	24	23	27	24	2.00
48590597--48590759	40	4.1	39	79	10	100	25	23	28	23	2.00
48590596--48590746	79	1.9	80	82	6	191	25	23	27	23	2.00
48598491--48598716	40	5.7	40	87	4	280	25	21	26	26	1.99
48600271--48600371	43	2.4	43	71	5	98	28	23	20	26	1.99
48607431--48607467	14	2.8	13	88	11	58	62	10	5	21	1.48
48616440--48616466	14	1.9	14	100	0	54	59	11	7	22	1.56
48618337--48618554	47	4.7	44	73	13	147	26	27	18	27	1.98
48629205--48629381	47	3.7	47	76	9	160	27	19	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161