genome.fa.s22.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  115  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36504154--36504186	15	2.2	15	89	10	50	45	6	3	45	1.43
36505662--36505966	152	2.0	154	92	1	515	32	7	13	46	1.71
36507119--36507180	30	2.1	30	96	0	115	19	11	16	53	1.72
36507119--36507170	17	3.3	17	74	20	67	19	11	17	51	1.75
36507666--36507712	23	2.0	23	87	0	67	34	17	10	38	1.84
36507744--36507787	23	1.9	23	86	9	63	27	15	18	38	1.91
36508020--36508177	84	1.9	84	85	5	221	30	13	15	40	1.86
36509652--36509778	58	2.3	55	78	6	130	44	6	18	29	1.75
36517137--36517199	24	2.5	25	76	5	65	47	4	3	44	1.40
36533945--36534010	20	3.3	20	65	12	55	25	34	13	25	1.93
36533869--36534024	40	3.9	40	85	6	210	23	29	17	30	1.97
36533869--36534024	79	2.0	80	87	3	226	23	29	17	30	1.97
36533869--36534042	40	4.4	40	82	8	176	24	27	16	31	1.97
36538612--36538652	17	2.4	17	87	0	64	29	17	24	29	1.97
36540393--36540417	13	1.9	13	100	0	50	52	0	8	40	1.31
36544657--36544696	19	2.1	19	95	0	71	45	5	17	32	1.70
36545119--36545151	6	5.3	6	92	7	57	66	0	18	15	1.25
36547934--36547958	11	2.3	11	100	0	50	20	8	16	56	1.65
36552352--36552643	51	5.7	51	76	7	299	29	14	25	30	1.95
36552458--36552540	26	3.2	26	65	21	66	31	12	25	31	1.92
36552356--36552640	153	1.9	153	83	5	380	29	14	25	30	1.95
36552352--36552647	102	2.9	101	88	3	398	29	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36552356--36552672	153	2.1	153	81	5	356	30	13	24	30	1.94
36555797--36555829	16	2.0	17	88	5	50	54	9	15	21	1.68
36566039--36566109	16	4.4	16	81	0	79	42	14	18	25	1.87
36566281--36566321	14	3.1	14	79	10	50	58	0	0	41	0.98
36569443--36569927	49	10.0	49	97	1	888	30	8	31	29	1.87
36570046--36570124	37	2.1	37	90	0	122	24	18	31	25	1.98
36571931--36572105	50	3.4	50	80	11	185	27	20	28	23	1.99
36572021--36572190	85	2.0	85	100	0	340	25	22	30	21	1.98
36573929--36574081	76	2.0	76	97	0	288	53	15	7	22	1.68
36577340--36577380	21	2.0	21	85	0	55	46	9	21	21	1.80
36577427--36577457	13	2.3	14	94	5	55	74	12	0	12	1.08
36585142--36585194	18	2.9	18	80	2	61	41	45	1	11	1.51
36585298--36585364	9	7.4	9	91	0	107	23	11	20	43	1.85
36586597--36586636	17	2.4	17	82	0	53	35	0	0	65	0.93
36593148--36593195	18	2.7	18	78	9	62	39	16	2	41	1.60
36598822--36598918	49	2.0	49	95	0	176	28	12	16	42	1.84
36607426--36607490	31	2.1	31	97	0	121	44	10	10	33	1.74
36607630--36607684	14	3.7	14	75	13	56	63	0	3	32	1.12
36608845--36608911	26	2.6	26	86	11	86	31	4	7	56	1.47
36609339--36609483	74	2.0	74	81	2	175	44	2	6	45	1.44
36611924--36612008	38	2.3	38	85	2	109	41	11	7	40	1.69
36611940--36612015	38	2.0	38	97	0	143	38	11	10	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36623419--36623448	13	2.2	14	94	5	53	46	0	6	46	1.29
36628047--36628119	31	2.3	31	95	2	128	27	2	13	56	1.51
36628596--36628696	35	2.9	33	81	8	105	22	12	21	42	1.87
36630355--36630397	14	3.1	14	72	0	50	13	16	11	58	1.64
36635980--36636010	15	2.1	15	100	0	62	35	19	0	45	1.51
36636850--36637044	93	2.1	92	88	4	286	44	4	4	47	1.41
36637077--36637110	17	2.0	17	94	0	59	44	5	0	50	1.26
36637077--36637115	17	2.4	16	87	8	53	43	5	0	51	1.24
36637081--36637120	17	2.3	18	83	12	57	47	5	0	47	1.24
36637200--36637334	15	8.9	15	67	24	70	42	2	3	51	1.32
36637076--36637294	120	1.8	119	89	6	345	40	3	5	50	1.44
36637302--36637343	15	2.7	16	82	14	52	45	0	2	52	1.13
36637293--36637590	154	1.9	156	95	2	546	47	5	3	44	1.41
36637443--36637477	18	2.0	17	88	5	52	45	0	0	54	0.99
36637710--36637748	16	2.4	16	86	0	51	28	33	2	35	1.71
36637723--36637779	16	3.6	16	95	0	87	33	36	0	29	1.58
36639641--36639707	17	3.8	17	68	16	55	29	2	2	64	1.23
36639714--36639753	19	2.2	19	86	4	55	40	0	5	55	1.22
36643272--36643306	15	2.2	17	90	10	56	14	11	5	68	1.37
36646031--36646057	5	5.4	5	100	0	54	62	0	0	37	0.95
36652584--36652667	27	3.1	27	82	0	78	35	7	27	29	1.83
36652853--36652906	27	2.0	27	85	0	72	37	14	27	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36655060--36655104	11	4.4	11	81	13	51	8	0	11	80	0.92
36661492--36661520	6	4.8	6	100	0	58	31	0	51	17	1.45
36661499--36661684	58	3.2	59	78	13	199	32	3	51	12	1.56
36661701--36661969	30	9.1	30	84	11	351	52	0	10	36	1.38
36661773--36661969	31	6.5	31	88	8	291	52	0	10	36	1.36
36661773--36661969	59	3.3	61	90	5	312	52	0	10	36	1.36
36661773--36661969	61	3.3	60	89	6	292	52	0	10	36	1.36
36662368--36662417	21	2.4	21	82	0	55	32	32	10	26	1.89
36663487--36663512	13	2.0	13	100	0	52	84	0	15	0	0.62
36665653--36665678	3	8.7	3	100	0	52	65	0	34	0	0.93
36666428--36666784	67	5.3	67	81	2	376	34	14	25	25	1.94
36666750--36666843	49	1.9	49	88	0	143	36	12	20	30	1.90
36666856--36666916	27	2.3	27	79	0	77	27	16	37	18	1.92
36670268--36670303	18	2.0	18	88	0	54	52	11	5	30	1.59
36670934--36671057	62	2.0	62	100	0	248	29	20	9	40	1.84
36674274--36674308	18	1.9	18	88	0	52	34	22	5	37	1.78
36677861--36677892	16	1.9	17	93	6	57	12	25	46	15	1.81
36697597--36697645	22	2.2	22	100	0	98	28	22	4	44	1.71
36697937--36697978	21	2.0	21	90	0	66	9	38	0	52	1.34
36700919--36700973	28	1.9	29	82	17	71	56	5	0	38	1.23
36702972--36703005	3	11.3	3	93	0	59	70	0	29	0	0.87
36704825--36704881	23	2.5	23	85	5	80	49	0	3	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36705799--36706137	114	3.0	113	68	17	275	28	23	20	27	1.99
36705780--36706210	228	1.9	228	83	3	564	28	22	20	28	1.99
36706760--36706829	21	3.3	22	73	11	58	20	0	34	45	1.51
36706763--36706836	14	5.3	14	70	6	60	22	0	29	47	1.52
36706777--36706836	21	2.9	21	75	9	59	23	0	30	46	1.52
36708008--36708039	16	2.0	16	100	0	64	62	6	6	25	1.42
36708005--36708059	28	1.9	29	85	10	78	65	3	7	23	1.34
36708374--36708435	24	2.6	24	80	7	65	29	41	3	25	1.71
36709490--36709528	20	2.0	20	84	0	51	53	5	7	33	1.51
36709611--36709787	9	20.3	9	68	20	92	43	16	1	37	1.59
36709673--36709704	16	2.0	16	100	0	64	43	25	0	31	1.55
36709837--36709869	15	2.1	16	94	5	59	48	3	0	48	1.17
36709848--36709978	23	5.5	23	75	18	126	42	3	3	51	1.33
36709848--36709978	47	2.7	48	82	12	144	42	3	3	51	1.33
36709938--36709982	21	2.1	21	92	8	74	40	0	0	60	0.97
36709875--36709978	49	2.1	51	85	10	144	42	1	3	51	1.31
36709848--36709984	24	5.9	22	72	19	93	42	2	2	51	1.31
36709932--36709984	21	2.6	20	80	16	72	43	1	0	54	1.11
36709967--36709996	13	2.4	13	94	5	53	40	0	0	60	0.97
36709875--36710004	52	2.5	51	80	8	140	41	1	3	53	1.25
36710083--36710129	18	2.5	18	89	6	67	42	4	0	53	1.20
36710139--36710222	34	2.5	34	84	0	96	44	17	1	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36710139--36710283	9	17.2	9	71	13	94	44	17	1	36	1.57
36710135--36710188	25	2.2	25	86	0	72	48	14	0	37	1.45
36710173--36710264	25	3.7	25	88	0	112	45	17	1	35	1.56
36710244--36710274	16	1.9	16	93	0	53	54	9	0	35	1.33
36713782--36713959	90	2.0	90	95	0	320	34	12	8	43	1.74
36714823--36714871	12	4.3	12	75	15	59	36	20	42	0	1.52
36715306--36715598	42	6.9	42	83	5	297	26	22	20	30	1.98
36716267--36716297	12	2.6	12	94	0	53	25	16	0	58	1.38
36721361--36721408	21	2.3	21	82	13	55	27	2	2	68	1.11
36723901--36723965	23	2.8	22	77	9	67	33	7	3	55	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161