genome.fa.s22.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  2  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414402--414451	22	2.3	22	93	3	84	20	18	6	56	1.62
416288--416336	25	2.0	24	92	4	80	40	0	2	57	1.10
418002--418074	9	8.0	9	69	14	51	68	1	2	27	1.11
418031--418112	27	3.1	25	75	11	74	60	4	1	32	1.25
418104--418149	21	2.3	19	88	7	65	56	2	2	39	1.24
418895--418933	19	2.0	20	85	5	53	56	0	5	38	1.22
418935--418973	17	2.3	17	90	0	60	46	2	2	48	1.29
418881--419161	70	4.0	67	74	12	233	49	3	3	43	1.34
419000--419128	17	7.3	17	68	15	57	53	3	1	41	1.26
419034--419176	70	2.0	71	89	1	216	48	4	2	44	1.36
419243--419311	17	3.9	17	73	12	59	52	0	2	44	1.16
419334--419394	18	3.4	18	84	10	63	49	1	1	47	1.21
419334--419371	9	4.2	9	93	6	60	44	0	0	55	0.99
419335--419392	9	6.6	9	77	16	50	50	1	1	46	1.22
419279--419441	80	2.1	79	81	8	188	46	4	4	45	1.42
421174--421220	18	2.8	17	87	6	60	82	0	6	10	0.82
433096--434023	88	10.6	88	98	0	1768	27	18	26	28	1.98
433985--434353	44	8.4	44	92	0	585	28	17	31	22	1.96
434644--434668	7	3.6	7	100	0	50	88	0	0	12	0.53
435502--435539	19	2.0	19	94	0	67	31	23	10	34	1.89
438587--438670	38	2.2	39	87	8	120	59	4	33	2	1.31
438617--438690	38	2.0	39	81	7	91	60	2	33	2	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438709--438770	31	2.0	30	84	9	81	33	0	30	35	1.58
442578--443042	226	2.1	226	95	0	835	35	21	9	33	1.86
443111--443156	23	2.0	23	95	0	83	52	19	8	19	1.72
443993--444019	14	1.9	14	100	0	54	59	11	7	22	1.56
448715--448741	14	1.9	14	100	0	54	59	11	7	22	1.56
449100--449139	13	3.1	13	96	0	71	15	35	32	17	1.91
449233--449275	20	2.2	20	100	0	86	0	23	20	55	1.43
451164--451191	10	2.8	10	100	0	56	71	0	10	17	1.14
453093--453636	93	5.8	93	98	0	1027	29	29	19	22	1.98
467694--467721	14	2.0	14	100	0	56	35	21	14	28	1.92
469208--469262	25	2.2	25	77	6	58	27	18	25	29	1.98
469287--469358	24	3.0	24	73	4	74	41	18	18	22	1.90
470196--470240	22	2.0	22	100	0	90	22	28	8	40	1.84
471358--471414	27	2.1	27	87	6	80	22	31	24	21	1.98
471481--471570	45	2.0	45	97	0	171	44	10	11	34	1.73
471766--471791	13	2.0	13	100	0	52	30	0	23	46	1.53
472363--472404	10	4.1	11	82	11	54	38	2	0	59	1.10
472363--472404	21	2.0	20	86	13	59	38	2	0	59	1.10
473098--473206	41	2.7	40	73	7	112	27	18	24	29	1.98
477556--477685	64	2.0	64	90	0	206	20	20	24	33	1.97
480578--480699	47	2.6	47	94	0	208	36	13	24	25	1.93
480678--480874	55	3.6	54	82	4	227	37	17	23	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481199--481232	18	1.9	18	88	5	52	32	20	14	32	1.93
481396--481442	3	15.7	3	100	0	94	65	0	0	34	0.93
482319--482433	29	4.0	28	77	6	106	25	26	18	29	1.98
482650--482699	8	6.2	8	88	0	73	8	22	24	46	1.78
482650--482699	16	3.1	16	91	0	82	8	22	24	46	1.78
488961--489020	3	20.0	3	89	0	93	61	0	0	38	0.96
488965--489043	21	3.6	21	86	5	95	56	1	1	40	1.15
488961--489029	27	2.6	26	88	4	93	57	0	0	42	0.98
489917--489998	28	2.9	28	77	8	85	28	26	15	29	1.96
490210--490255	8	5.8	8	81	0	56	10	21	23	43	1.84
490217--490260	16	2.8	16	82	3	54	11	18	22	47	1.80
497016--497137	47	2.6	47	93	0	199	35	13	25	25	1.93
497116--497312	55	3.6	54	84	4	245	36	17	24	21	1.95
497832--497868	12	2.7	14	88	12	51	62	2	2	32	1.23
501321--501403	42	2.0	42	95	0	148	36	16	6	40	1.74
502777--503115	49	6.8	49	83	4	410	29	25	18	26	1.98
502782--502859	26	3.1	26	66	23	76	30	26	15	26	1.96
502771--503115	100	3.5	98	83	4	431	29	25	18	26	1.98
502784--503116	150	2.2	150	92	1	544	29	25	18	26	1.98
515827--515946	43	2.8	42	79	9	145	25	25	16	31	1.97
520152--520193	22	1.9	22	85	9	59	42	7	26	23	1.80
521383--521503	42	2.8	43	83	4	147	32	26	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531073--531112	20	2.0	22	85	14	59	50	20	5	25	1.68
532533--532724	56	3.4	56	90	0	285	33	21	14	30	1.93
537794--537837	12	3.7	11	80	14	52	29	0	50	20	1.49
537794--537844	12	4.2	12	80	5	50	29	0	49	21	1.50
539204--539328	27	4.8	26	80	12	121	39	19	20	20	1.93
539228--539358	27	5.0	26	78	10	79	38	19	20	22	1.94
539348--539553	27	7.6	27	81	7	192	24	15	20	39	1.91
539348--539553	81	2.5	80	85	4	252	24	15	20	39	1.91
539344--539553	54	3.9	54	80	1	233	24	14	21	39	1.91
539827--539871	23	1.9	24	90	4	74	22	2	51	24	1.60
539885--539939	18	3.1	18	84	5	58	25	23	12	38	1.90
542196--542231	18	1.9	19	88	5	56	36	16	0	47	1.47
542462--542651	56	3.4	56	88	2	265	33	24	14	27	1.94
542630--542705	31	2.5	31	88	0	107	26	23	15	34	1.95
544090--544332	29	8.4	29	81	8	237	20	15	25	38	1.92
544090--544333	57	4.2	57	84	3	276	20	15	25	38	1.92
544092--544333	86	2.8	87	79	9	264	20	15	25	38	1.91
555902--556123	46	4.8	46	83	5	286	20	20	29	29	1.97
557822--557869	25	1.9	25	100	0	96	25	25	4	45	1.71
557826--557879	25	2.2	25	86	0	72	24	31	7	37	1.83
558736--558770	17	2.0	18	94	5	63	5	34	42	17	1.73
561611--561984	186	2.0	187	98	0	732	30	13	25	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564504--565095	40	14.8	40	98	0	1096	24	20	29	25	1.99
567301--567411	27	4.1	26	85	9	134	19	24	20	35	1.96
570071--570235	43	3.9	41	78	7	159	31	25	18	24	1.97
570116--570234	44	2.8	44	81	6	127	31	26	17	23	1.97
572577--572924	40	8.6	40	83	7	429	24	21	28	25	1.99
572577--572922	79	4.3	80	85	9	454	24	21	28	25	1.99
583644--583801	68	2.3	68	77	11	160	21	27	15	34	1.94
591875--592088	46	4.6	46	83	11	240	29	28	20	21	1.98
591874--592042	93	1.8	93	89	2	268	29	28	20	21	1.98
595932--596116	40	4.6	40	81	3	219	23	27	23	24	2.00
595896--596116	80	2.8	80	82	6	227	24	26	23	25	2.00
597910--598007	42	2.3	43	78	1	108	31	19	18	30	1.96
600086--600257	85	2.0	85	95	0	308	42	6	23	27	1.79
601996--602025	15	1.9	16	93	6	53	40	26	0	33	1.57
602195--602348	42	3.7	41	79	10	152	31	24	14	29	1.95
604881--604942	21	2.9	19	76	19	54	66	0	4	29	1.12
604966--605007	21	2.0	21	90	0	66	76	0	2	21	0.90
605328--605392	14	4.6	14	75	9	53	63	0	3	33	1.10
613435--613466	12	2.7	12	95	0	55	53	6	28	12	1.62
614118--614164	24	2.1	23	84	11	62	44	27	0	27	1.55
615560--615669	42	2.6	43	78	10	118	33	20	18	27	1.96
621710--621821	55	2.0	55	91	0	179	42	20	10	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623974--624152	28	6.4	28	94	0	288	33	27	12	26	1.92
635460--635788	48	6.8	48	86	1	417	26	17	28	27	1.98
635502--635821	96	3.3	93	81	7	363	25	16	29	27	1.97
635498--635821	144	2.2	144	84	4	395	26	16	29	27	1.97
641722--641796	36	2.1	35	97	2	141	33	5	13	48	1.65
642483--642586	53	2.0	53	98	0	199	27	19	22	30	1.98
642554--642850	147	2.0	147	92	1	497	27	22	18	30	1.97
643817--644040	40	5.7	40	83	8	248	25	26	22	25	2.00
643817--644040	79	2.8	80	81	11	246	25	26	22	25	2.00
643811--644038	118	1.9	120	83	8	297	24	27	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161