genome.fa.s22.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  121  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38362407--38362439	14	2.3	15	94	5	59	30	0	33	36	1.58
38362519--38362693	74	2.3	74	86	6	224	26	1	26	45	1.63
38362663--38362724	27	2.3	27	86	8	83	17	3	40	38	1.66
38362708--38362748	21	1.9	22	85	5	57	19	0	39	41	1.52
38363113--38363160	15	3.4	15	68	26	50	58	0	4	37	1.18
38363080--38363163	27	3.3	27	79	14	106	53	0	3	42	1.18
38364116--38364141	5	5.2	5	100	0	52	80	0	0	19	0.71
38366265--38366306	21	2.0	21	90	9	68	30	9	0	59	1.29
38368840--38369025	43	4.4	43	84	7	229	25	16	26	30	1.97
38369303--38369344	17	2.5	17	84	0	57	54	0	21	23	1.44
38369724--38369761	20	1.9	20	94	0	67	36	5	7	50	1.54
38375948--38375987	21	1.9	21	94	0	71	15	12	12	60	1.60
38377798--38377826	6	4.8	6	100	0	58	68	0	13	17	1.20
38378605--38378679	23	3.3	23	86	3	116	32	26	21	20	1.97
38385954--38386051	23	4.3	23	89	2	153	31	25	21	21	1.98
38385961--38386049	45	2.0	45	93	0	151	31	25	22	20	1.98
38395189--38395237	24	2.0	24	85	14	66	51	0	2	46	1.12
38395315--38395356	16	2.6	17	85	7	52	54	0	0	45	0.99
38395271--38395410	61	2.3	58	85	4	172	44	3	1	50	1.28
38415866--38415964	35	2.8	35	78	0	108	27	29	16	27	1.97
38416761--38417246	57	8.6	57	75	8	312	33	17	12	36	1.88
38416761--38416968	116	1.8	114	82	2	272	32	16	12	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38427765--38428250	57	8.6	57	76	4	331	32	17	13	35	1.90
38432009--38432063	9	5.6	9	78	19	56	47	1	20	30	1.60
38432434--38432495	26	2.3	27	83	8	74	35	17	8	38	1.80
38435311--38435606	151	2.0	152	95	0	540	41	16	14	27	1.87
38438972--38439126	41	3.7	42	79	9	158	30	5	12	50	1.62
38439169--38439232	28	2.2	29	81	8	78	37	0	14	48	1.44
38440755--38440829	3	25.0	3	91	5	125	0	32	0	68	0.90
38443215--38443249	18	1.9	18	88	0	52	54	17	17	11	1.71
38452095--38452157	32	2.0	32	90	0	99	34	22	30	12	1.91
38452323--38452993	336	2.0	336	99	0	1315	30	20	23	24	1.98
38452728--38453322	216	2.8	216	91	2	928	30	19	23	26	1.98
38453224--38453382	44	3.7	44	72	6	128	31	16	21	30	1.95
38453270--38453460	41	4.5	41	72	8	132	28	19	21	29	1.98
38453229--38453416	85	2.2	85	89	0	286	29	17	21	31	1.96
38453255--38453462	85	2.4	85	83	1	229	31	18	21	29	1.97
38453513--38453888	50	7.5	50	77	0	401	33	24	19	21	1.97
38453481--38453892	100	4.1	100	96	0	725	33	24	19	22	1.97
38455727--38455777	20	2.6	19	81	15	59	39	1	1	56	1.22
38455780--38455905	63	2.0	63	88	0	189	37	6	10	46	1.64
38458608--38458641	9	3.9	9	84	7	52	0	11	0	88	0.52
38458609--38458641	17	1.9	17	93	0	57	0	12	0	87	0.53
38459650--38459692	10	4.2	10	80	13	52	72	0	6	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38459663--38459721	17	3.6	16	73	15	57	76	0	5	18	0.97
38459659--38459723	22	3.0	21	80	13	62	75	0	4	20	0.98
38463656--38463691	15	2.5	14	86	8	54	44	8	0	47	1.33
38474077--38474427	146	2.4	145	80	2	389	37	10	13	38	1.80
38483419--38483844	107	4.0	107	96	2	761	39	13	16	30	1.88
38483829--38483867	10	3.9	10	83	10	53	87	0	10	2	0.65
38483832--38483867	14	2.6	13	87	12	54	88	0	8	2	0.59
38483633--38484083	239	1.9	238	88	5	676	42	12	15	29	1.84
38483873--38484186	108	2.9	110	88	6	428	38	14	15	30	1.88
38486434--38487390	107	9.1	105	86	7	1181	30	16	14	39	1.87
38486434--38487391	215	4.6	213	85	8	1274	30	16	13	39	1.87
38487208--38487389	88	2.0	92	86	8	255	28	17	16	37	1.91
38496383--38496733	146	2.4	147	80	2	384	38	13	10	37	1.80
38507119--38507153	15	2.4	15	90	4	54	48	0	8	42	1.33
38511089--38511132	21	2.1	21	83	8	54	18	4	0	77	0.94
38511106--38511147	17	2.5	17	84	0	57	16	7	0	76	1.00
38511096--38511159	27	2.3	26	82	10	67	20	6	0	73	1.04
38512169--38512201	17	1.9	17	93	0	57	87	0	12	0	0.53
38512169--38512202	9	3.9	9	84	7	52	88	0	11	0	0.52
38516854--38517029	50	3.5	50	77	0	199	22	19	23	33	1.97
38516847--38517062	100	2.2	100	88	0	333	24	19	24	31	1.98
38516850--38517062	50	4.3	50	76	0	156	24	20	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38517065--38517150	44	2.0	44	83	0	109	22	29	22	26	1.99
38517080--38517313	85	2.8	85	85	1	254	29	22	18	29	1.97
38517126--38517272	41	3.5	41	71	12	127	32	21	19	27	1.97
38517160--38517306	44	3.4	44	71	9	131	30	23	14	31	1.94
38517220--38517630	217	1.9	216	85	4	578	26	22	19	31	1.98
38517521--38517856	130	2.6	130	93	0	582	23	22	22	31	1.99
38518117--38518152	18	2.0	18	94	0	63	11	30	27	30	1.91
38529082--38529116	18	2.0	18	88	5	54	22	0	8	68	1.16
38529364--38529438	3	25.0	3	91	5	125	68	0	32	0	0.90
38530961--38531024	28	2.2	29	81	8	78	48	14	0	37	1.44
38531067--38531221	41	3.7	42	79	9	158	50	12	5	30	1.62
38542497--38542540	16	2.6	16	85	7	52	27	0	4	68	1.09
38542608--38542657	26	1.9	26	84	8	66	62	0	0	38	0.96
38550181--38550324	29	5.0	29	79	5	139	33	23	22	20	1.97
38550178--38550324	58	2.5	58	80	4	154	34	23	21	21	1.97
38550312--38550344	17	1.9	17	93	0	57	24	24	24	27	2.00
38557809--38557877	25	2.9	23	79	10	75	56	2	5	34	1.38
38557809--38557859	23	2.1	25	89	7	79	54	1	7	35	1.40
38557850--38557947	3	33.0	3	76	10	85	60	4	1	34	1.23
38557908--38557987	21	3.3	25	80	13	89	61	3	2	32	1.27
38558029--38558056	10	2.8	10	100	0	56	78	0	0	21	0.75
38559792--38560048	86	3.0	86	98	0	487	28	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38560105--38560430	44	7.5	44	67	12	125	26	25	19	28	1.98
38559999--38560592	131	4.5	131	88	1	861	25	24	20	29	1.99
38561943--38561980	3	12.7	3	88	0	58	0	26	0	73	0.83
38567340--38567376	10	3.6	10	88	3	56	70	0	29	0	0.88
38568307--38568351	18	2.5	18	85	0	63	24	4	51	20	1.66
38572827--38573780	287	3.3	287	93	1	1614	30	12	6	50	1.65
38573868--38573901	15	2.3	15	89	0	50	2	11	8	76	1.12
38574192--38574315	3	42.3	3	71	16	59	0	29	0	70	0.93
38574163--38574314	44	3.4	44	82	9	137	0	31	0	67	0.95
38574199--38574314	44	2.6	45	90	5	184	0	29	0	69	0.94
38574372--38574433	27	2.3	27	91	0	97	16	30	32	20	1.95
38574841--38574885	18	2.5	17	82	13	54	51	6	4	37	1.49
38577356--38577573	113	1.9	113	86	1	312	27	18	24	29	1.98
38581538--38581731	39	5.2	39	77	12	201	17	17	30	35	1.92
38581579--38581638	29	2.1	29	87	0	84	20	16	28	35	1.94
38581540--38581677	68	2.0	68	88	2	206	18	18	28	34	1.94
38582731--38582940	98	2.1	98	94	0	366	20	27	32	20	1.97
38585761--38586061	78	3.9	78	84	5	333	44	12	13	29	1.81
38589081--38589171	44	2.1	44	95	0	164	48	14	9	27	1.75
38591027--38591117	44	2.1	44	89	0	137	47	10	12	29	1.75
38591266--38591297	9	3.8	9	88	12	50	43	0	9	46	1.35
38606264--38606354	9	10.4	9	70	17	50	59	1	4	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38606264--38606354	18	5.2	17	67	18	62	59	1	4	35	1.25
38616261--38616307	10	4.6	10	79	12	51	72	2	0	25	0.96
38616286--38616362	33	2.3	34	86	6	104	63	11	0	24	1.28
38617662--38617755	23	4.1	23	85	0	134	47	4	25	22	1.69
38620669--38620762	23	4.1	23	85	0	134	47	4	25	22	1.69
38623058--38623098	3	13.7	3	100	0	82	68	0	0	31	0.90
38623227--38623275	18	2.8	18	90	9	75	59	2	0	38	1.09
38623304--38623354	18	2.9	18	72	13	52	33	0	1	64	1.05
38629874--38629946	35	2.1	35	100	0	146	39	19	13	27	1.89
38644581--38644703	58	2.1	58	84	1	165	26	14	12	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161