genome.fa.s22.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  119  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37659837--37659874	16	2.4	16	90	0	58	65	5	13	15	1.43
37675358--37675457	43	2.2	48	79	15	117	47	16	8	29	1.74
37675347--37675439	43	2.2	42	90	3	141	48	13	8	29	1.73
37680633--37680667	14	2.4	14	95	4	61	8	25	0	65	1.21
37680613--37680657	19	2.5	18	83	16	58	6	26	0	66	1.16
37683073--37683104	16	1.9	17	93	6	57	53	0	0	46	1.00
37683097--37683309	61	3.4	63	69	17	194	41	2	6	49	1.41
37683059--37683351	120	2.4	120	92	2	482	42	2	5	50	1.36
37683180--37683214	18	2.0	17	88	5	52	40	0	0	60	0.97
37683300--37683334	18	2.0	17	88	5	52	45	0	0	54	0.99
37683288--37683562	147	1.9	149	96	1	509	47	2	3	46	1.33
37683447--37683481	18	2.0	17	88	5	52	45	0	0	54	0.99
37683643--37683737	45	2.1	45	88	1	138	32	27	5	34	1.79
37683718--37683785	16	4.2	16	92	0	109	36	35	0	27	1.58
37684268--37684460	93	2.1	90	78	4	199	39	18	10	31	1.85
37684590--37684656	10	7.0	10	71	10	50	59	1	1	37	1.16
37684592--37684673	29	2.7	29	81	9	85	58	2	1	37	1.19
37684900--37685001	20	4.8	20	69	24	57	27	5	1	64	1.27
37684903--37685002	18	5.3	18	72	18	62	28	6	2	64	1.28
37684952--37685003	9	5.8	9	77	6	52	26	1	1	69	1.10
37684960--37685013	28	1.9	28	85	7	74	33	0	1	64	1.04
37688905--37688996	13	6.4	14	65	25	50	42	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37688948--37688999	25	2.0	28	85	11	74	38	0	3	57	1.17
37694213--37694279	34	1.9	35	81	3	82	46	8	8	35	1.67
37694789--37694824	17	2.1	17	100	0	72	52	5	13	27	1.63
37698536--37698582	23	2.0	23	100	0	94	40	17	12	29	1.86
37704633--37704683	14	3.6	14	71	10	50	47	5	0	47	1.26
37706401--37706457	22	2.6	22	86	2	80	29	26	29	14	1.95
37711089--37711182	30	2.9	30	77	15	80	53	1	1	44	1.14
37711123--37711158	19	1.9	19	88	5	56	55	0	0	44	0.99
37711176--37711219	9	5.1	9	78	10	56	43	0	4	52	1.22
37720379--37720430	17	3.1	17	82	0	68	36	21	5	36	1.77
37722107--37722133	10	2.7	10	100	0	54	7	11	0	81	0.87
37721658--37722879	610	2.0	610	91	0	1955	27	16	17	38	1.92
37728863--37728942	41	2.0	41	92	0	133	17	20	32	30	1.95
37728918--37728967	25	2.0	26	92	4	84	22	20	26	32	1.98
37728876--37729008	66	2.0	67	91	1	214	19	20	29	30	1.97
37728943--37729042	41	2.5	40	90	4	155	20	22	30	28	1.98
37729696--37729737	21	2.0	21	85	0	57	21	2	45	30	1.65
37729712--37729758	14	3.4	14	80	11	51	25	4	40	29	1.75
37731079--37731109	16	1.9	16	100	0	62	0	12	25	61	1.32
37737419--37737641	111	2.0	111	90	3	351	23	13	29	33	1.92
37737580--37737715	43	3.2	43	92	2	202	20	18	31	29	1.96
37737558--37737715	86	1.8	85	84	6	212	22	17	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37738670--37738733	3	21.3	3	96	0	119	0	32	0	67	0.91
37742154--37742197	21	2.2	20	84	12	54	36	13	4	45	1.64
37746961--37747204	50	4.9	50	84	1	240	22	27	20	28	1.99
37747023--37747204	100	1.8	100	86	0	265	21	29	21	26	1.99
37753299--37753595	50	5.8	50	81	2	272	24	26	20	28	1.99
37758680--37758729	23	2.1	23	82	10	57	46	10	6	38	1.62
37758982--37759019	19	2.1	19	85	14	53	68	23	5	2	1.23
37761114--37761149	17	2.2	16	90	5	54	36	0	0	63	0.94
37762234--37762982	374	2.0	374	99	0	1471	41	13	12	32	1.82
37763311--37763349	15	2.6	15	91	0	60	56	5	2	35	1.35
37763293--37763333	12	3.7	11	81	18	50	63	4	0	31	1.15
37766836--37766868	16	2.1	16	100	0	66	45	6	18	30	1.73
37767637--37767662	3	8.7	3	100	0	52	30	0	0	69	0.89
37773107--37773156	21	2.4	21	79	0	55	30	10	26	34	1.89
37773310--37773384	25	3.3	22	71	14	62	49	0	0	50	1.00
37773408--37773463	29	1.9	29	89	7	87	50	0	3	46	1.19
37776399--37776622	30	7.4	30	74	6	137	37	10	25	26	1.88
37776398--37776625	91	2.5	91	86	0	312	37	10	26	26	1.88
37782060--37782203	33	4.3	33	68	8	94	27	20	17	35	1.94
37782026--37782243	101	2.2	101	85	5	289	27	23	15	33	1.95
37793902--37793935	17	2.0	17	100	0	68	35	5	35	23	1.79
37794848--37794935	44	2.0	44	95	0	158	18	18	5	57	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37798205--37798239	18	1.9	18	100	0	70	40	0	14	45	1.45
37800192--37800246	17	3.3	17	87	2	76	27	3	14	54	1.57
37802166--37802199	4	8.2	4	96	3	59	26	0	0	73	0.83
37805848--37805891	5	9.2	5	81	18	58	22	20	15	40	1.90
37805848--37805901	9	5.8	9	81	18	58	24	20	14	40	1.90
37805848--37805901	24	2.3	22	82	17	65	24	20	14	40	1.90
37809560--37809585	7	3.7	7	100	0	52	15	69	0	15	1.20
37814398--37814573	56	3.1	56	99	0	343	45	9	22	22	1.80
37814398--37814608	112	1.9	112	81	7	259	48	8	21	20	1.76
37819022--37819212	41	4.6	41	98	0	355	23	28	20	27	1.99
37821911--37821980	30	2.4	29	73	7	70	37	5	21	35	1.77
37822312--37822479	45	3.7	45	82	1	176	26	14	23	35	1.93
37822314--37822479	90	1.8	90	87	2	244	25	14	24	36	1.93
37822359--37822517	45	3.6	45	83	7	182	23	13	27	35	1.93
37822314--37822504	90	2.1	90	82	5	226	25	14	24	35	1.93
37831485--37832138	45	14.5	44	70	12	290	31	18	21	29	1.97
37831480--37832067	45	12.9	44	71	10	292	32	17	20	28	1.96
37831611--37831736	51	2.6	51	75	13	115	35	15	16	31	1.91
37831663--37831826	89	1.8	89	84	2	222	31	17	20	30	1.95
37831801--37831977	96	1.9	96	87	3	268	29	19	22	28	1.98
37831804--37832067	96	2.8	95	79	9	256	32	19	20	27	1.97
37833106--37833184	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37833303--37833621	47	6.7	47	90	2	478	28	30	8	32	1.87
37833303--37833621	143	2.2	141	91	2	505	28	30	8	32	1.87
37837793--37837847	15	3.8	14	80	7	65	74	1	21	1	1.01
37841107--37841438	166	2.0	166	98	0	646	29	14	17	38	1.89
37845176--37845256	36	2.2	36	84	4	110	22	27	20	29	1.99
37845719--37845751	14	2.4	14	90	5	50	21	9	3	66	1.33
37855518--37855631	58	2.0	58	96	3	212	24	21	15	38	1.92
37868989--37869043	21	2.6	21	82	5	58	16	9	0	74	1.06
37877149--37877184	3	12.0	3	93	0	63	33	2	0	63	1.08
37885527--37886788	631	2.0	631	95	0	2292	33	17	22	26	1.96
37886503--37888051	776	2.0	776	98	0	2983	31	20	22	25	1.98
37891006--37891285	50	5.7	49	66	5	168	32	25	21	20	1.98
37890991--37891433	99	4.5	99	86	0	564	32	24	20	22	1.98
37890991--37891432	199	2.2	198	84	0	580	32	24	20	22	1.98
37892409--37892441	3	11.0	3	93	0	57	33	3	0	63	1.10
37892681--37892706	4	6.5	4	100	0	52	23	0	0	76	0.78
37899402--37899817	45	9.3	44	78	1	319	30	16	22	30	1.96
37899403--37899930	44	11.9	44	79	2	410	31	15	21	31	1.95
37899402--37899930	133	4.0	133	85	1	565	31	15	22	31	1.95
37899405--37899930	89	5.9	89	80	2	369	31	15	22	31	1.95
37900552--37900591	11	3.3	12	82	10	55	17	7	0	75	1.03
37902613--37902656	3	14.7	3	100	0	88	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37903137--37903165	5	5.8	5	100	0	58	0	17	0	82	0.66
37907462--37907571	25	4.5	24	80	7	107	67	0	31	0	0.97
37907476--37907543	35	1.9	35	100	0	136	69	0	29	1	0.98
37907471--37907616	35	4.0	35	77	16	120	65	0	32	0	1.02
37907484--37907571	10	8.7	10	76	15	74	68	0	30	1	0.97
37907880--37908118	132	1.9	128	82	7	304	51	6	11	30	1.64
37908155--37908190	8	4.2	8	92	7	54	69	0	2	27	1.02
37907970--37908881	153	5.9	152	87	7	1222	51	7	9	31	1.63
37907970--37908881	304	3.0	304	87	6	1279	51	7	9	31	1.63
37912584--37912686	40	2.6	39	79	13	120	52	10	3	33	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161