genome.fa.s22.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  38  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11589955--11590055	48	2.1	49	85	9	136	31	0	3	63	1.19
11589956--11590059	29	3.6	28	81	11	113	33	0	3	61	1.21
11589965--11590056	10	9.5	10	77	14	86	33	1	3	61	1.19
11592420--11592460	20	2.0	20	85	4	55	14	0	17	68	1.22
11592500--11592610	9	12.6	8	77	18	82	34	2	1	61	1.21
11592500--11592610	20	6.3	16	76	19	82	34	2	1	61	1.21
11592495--11592621	28	4.8	26	73	19	86	36	2	2	59	1.23
11603538--11603572	18	2.0	18	88	5	54	42	0	2	54	1.15
11603496--11603585	44	2.0	44	89	0	135	36	5	4	53	1.45
11603510--11603583	24	3.2	24	70	14	75	37	5	4	52	1.43
11605366--11605406	20	2.0	20	85	0	55	75	14	2	7	1.12
11605380--11605413	17	1.9	17	94	5	59	70	17	5	5	1.28
11605443--11605499	27	2.1	27	96	0	105	29	22	35	12	1.91
11606175--11606237	19	3.3	19	68	0	63	41	9	3	46	1.52
11606627--11606686	27	2.2	27	96	0	111	15	33	21	30	1.94
11606712--11606741	15	1.9	16	93	6	53	10	6	16	66	1.41
11607264--11607316	21	2.4	21	78	6	61	37	0	1	60	1.08
11614299--11614353	23	2.3	24	81	3	67	52	7	0	40	1.29
11614303--11614353	24	2.2	23	80	10	59	50	7	0	41	1.31
11615396--11615446	23	2.2	23	89	0	75	43	21	7	27	1.80
11625341--11625396	26	2.2	26	86	0	76	39	14	17	28	1.89
11629793--11629825	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11634094--11634150	22	2.6	23	78	10	66	33	12	17	36	1.87
11640473--11640515	22	2.0	22	90	4	70	30	9	2	58	1.42
11643054--11643182	43	3.0	43	76	10	138	23	17	30	29	1.97
11648529--11648684	75	2.1	75	92	0	258	42	17	14	25	1.86
11648715--11648776	30	2.1	30	84	6	81	35	1	8	54	1.39
11648729--11648771	18	2.3	18	84	4	50	34	0	4	60	1.17
11648726--11648795	30	2.4	28	88	4	95	30	0	5	64	1.17
11651468--11651535	10	7.0	10	73	9	61	60	0	2	36	1.12
11651454--11651519	19	3.3	19	91	8	96	63	0	1	34	1.04
11654284--11654312	6	4.8	6	100	0	58	86	0	13	0	0.58
11654160--11654433	151	1.8	150	91	0	458	43	17	12	27	1.85
11661444--11661491	17	2.6	19	77	12	55	35	2	0	62	1.07
11666520--11666561	22	2.0	22	90	4	68	19	11	9	59	1.59
11666521--11666567	22	2.2	21	84	3	58	19	12	10	57	1.64
11666210--11666902	348	2.0	349	95	1	1239	26	19	15	39	1.91
11674935--11674984	24	2.1	24	85	10	68	26	14	10	50	1.73
11674988--11675025	12	2.9	13	84	11	51	28	10	7	52	1.64
11683348--11683396	21	2.3	22	80	16	59	42	4	14	38	1.64
11689923--11689987	31	2.1	31	85	2	87	33	9	13	43	1.76
11690899--11691004	52	2.0	54	92	3	180	33	14	5	47	1.67
11693111--11693139	14	2.0	15	93	6	51	55	0	0	44	0.99
11695293--11695333	20	2.0	20	100	0	82	56	9	19	14	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11696308--11696343	16	2.2	16	100	0	72	25	0	36	38	1.56
11696579--11696613	18	2.0	17	88	5	52	54	0	0	45	0.99
11696559--11696974	120	3.5	120	96	0	753	48	5	2	43	1.38
11696699--11696733	18	2.0	17	88	5	52	54	0	0	45	0.99
11696798--11696849	15	3.6	15	80	12	56	53	1	0	44	1.11
11697015--11697062	26	1.9	25	84	16	64	52	2	0	45	1.12
11696970--11697198	92	2.5	92	83	8	236	47	3	3	44	1.38
11700111--11700159	26	1.9	25	91	4	80	67	14	2	16	1.33
11711150--11711192	16	2.6	17	85	7	61	34	23	2	39	1.67
11711293--11711372	41	2.0	40	87	2	115	37	17	17	27	1.92
11715599--11715666	27	2.5	29	83	13	99	41	2	0	55	1.15
11726526--11726574	25	2.0	25	100	0	98	42	4	28	24	1.73
11736012--11736092	37	2.2	37	93	2	137	44	12	17	25	1.84
11741665--11741731	27	2.5	26	79	11	73	14	25	23	35	1.94
11756104--11756178	24	3.2	24	92	1	116	38	5	8	48	1.56
11756116--11756160	14	3.5	14	77	22	62	37	8	8	44	1.67
11756503--11756556	25	2.2	25	83	6	65	57	7	1	33	1.37
11759698--11759826	41	3.2	40	82	11	163	28	20	27	24	1.99
11759996--11760103	38	2.9	37	78	5	103	25	8	24	41	1.82
11766161--11766238	39	2.0	39	94	0	138	37	29	10	23	1.88
11771825--11772253	27	15.9	27	81	4	436	43	19	18	17	1.88
11772429--11772504	26	2.9	26	84	0	98	14	21	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11773305--11773496	94	2.1	94	94	1	341	29	15	18	36	1.92
11779792--11780138	27	12.9	27	85	2	439	43	21	19	16	1.88
11779781--11780138	81	4.4	81	87	4	499	43	20	18	16	1.88
11780282--11780356	26	3.0	25	82	5	71	16	16	22	45	1.85
11780309--11780385	26	3.0	26	86	0	91	14	19	24	41	1.89
11782745--11782875	37	3.3	39	74	9	115	31	19	18	31	1.95
11783776--11783929	8	19.4	8	87	9	226	50	0	0	48	1.10
11784234--11784269	18	2.0	18	94	0	63	5	19	44	30	1.73
11789327--11789376	24	2.1	23	81	7	55	54	10	2	34	1.45
11789412--11789444	17	2.0	16	94	5	57	36	21	12	30	1.90
11794813--11801581	47	144.0	47	99	0	13457	31	8	29	29	1.87
11801700--11801778	37	2.1	37	90	0	122	24	18	31	25	1.98
11811530--11811601	34	2.1	34	97	0	135	40	1	25	33	1.64
11821505--11821600	48	2.0	48	97	0	183	31	23	22	21	1.99
11834563--11834624	29	2.1	29	82	5	72	19	32	25	22	1.97
11836275--11836332	29	2.0	29	93	0	98	55	0	3	41	1.17
11837930--11837959	15	2.0	15	93	0	51	70	6	10	13	1.34
11841080--11841122	19	2.2	20	80	12	54	69	2	2	25	1.12
11852970--11852998	13	2.2	13	100	0	58	41	44	0	13	1.44
11853140--11853205	9	7.2	9	83	10	89	19	10	28	40	1.85
11855026--11855059	18	1.9	18	94	5	61	17	32	41	8	1.80
11858133--11858209	30	2.6	28	82	8	100	23	7	15	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11859165--11859198	3	11.3	3	100	0	68	0	32	0	67	0.91
11859422--11859487	29	2.2	29	84	10	80	51	15	12	21	1.75
11859525--11859559	5	6.8	5	87	6	52	45	0	14	40	1.45
11867844--11867911	29	2.3	29	87	5	93	41	25	11	22	1.87
11867950--11868080	67	2.0	67	84	3	174	33	18	14	33	1.91
11886100--11886216	25	4.7	25	74	16	109	30	21	23	23	1.99
11893458--11893502	23	2.0	23	86	0	63	51	0	2	46	1.13
11894895--11894946	26	2.0	26	88	0	77	38	17	11	32	1.85
11902663--11902706	19	2.2	19	88	8	61	72	2	9	15	1.19
11903392--11903434	18	2.3	18	80	4	50	37	0	2	60	1.10
11903423--11903481	20	3.0	20	80	5	66	30	0	3	66	1.08
11903842--11903880	20	1.9	21	89	5	62	33	5	2	58	1.33
11906156--11906186	6	5.2	6	92	0	53	32	0	19	48	1.49
11907301--11907327	9	3.0	9	100	0	54	33	0	22	44	1.53
11908021--11908053	11	2.8	12	81	9	50	51	12	21	15	1.75
11908681--11908717	19	1.9	19	94	0	65	62	2	0	35	1.10
11908690--11908747	30	1.9	30	82	0	71	63	0	1	34	1.04
11911335--11911400	26	2.5	26	100	0	132	39	18	28	13	1.89
11928577--11928615	20	2.0	19	94	0	60	23	41	15	17	1.88
11933915--11933972	30	1.9	30	85	0	80	43	0	22	34	1.54
11934148--11934179	13	2.5	13	94	0	55	31	0	12	56	1.37
11936261--11936429	66	2.6	66	100	0	338	18	20	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11940383--11940440	30	1.9	30	85	0	80	43	3	22	31	1.70
11940652--11940683	13	2.5	13	94	0	55	31	0	12	56	1.37
11940778--11941059	50	5.5	50	82	5	323	26	24	28	20	1.99
11940782--11941059	101	2.7	100	89	5	405	26	24	28	20	1.99
11941850--11941920	21	3.4	21	80	0	79	33	18	45	2	1.64
11942239--11942485	42	5.8	42	84	4	291	36	20	21	21	1.95
11942239--11942485	85	2.9	85	87	3	336	36	20	21	21	1.95
11943730--11943813	42	2.0	42	95	0	150	45	8	22	23	1.79
11943711--11943800	23	4.1	23	70	11	89	46	6	25	21	1.75
11963770--11963812	14	2.9	14	80	13	50	41	4	0	53	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161