genome.fa.s22.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  64  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19985140--19985180	22	1.9	21	85	5	55	26	4	0	68	1.10
19987266--19987300	17	2.1	17	88	0	52	37	28	11	22	1.89
19988555--19988799	34	7.2	34	73	6	185	31	11	14	42	1.82
19988563--19988732	68	2.5	68	94	0	295	31	12	13	42	1.81
19988563--19988799	68	3.5	67	87	2	289	30	11	13	43	1.81
19988861--19988915	24	2.5	22	80	13	76	29	25	18	27	1.98
19989729--19989762	14	2.4	14	90	9	52	38	8	8	44	1.67
19990125--19990173	3	16.3	3	91	0	80	65	2	2	30	1.15
19992112--19992151	16	2.3	18	87	12	66	40	0	0	60	0.97
19992455--19992486	7	4.6	7	96	0	55	46	28	0	25	1.53
19992767--19992874	54	2.0	54	96	0	198	22	37	11	29	1.89
20008297--20008327	16	1.9	16	93	0	53	25	16	19	38	1.92
20022357--20022381	13	1.9	13	100	0	50	0	16	0	84	0.63
20030873--20030902	15	2.0	15	93	0	51	33	3	26	36	1.73
20034585--20034703	42	2.8	42	75	5	98	17	26	15	40	1.89
20034635--20034684	21	2.4	22	76	6	59	18	34	14	34	1.90
20034684--20035160	238	2.0	238	96	0	882	33	11	18	36	1.87
20036463--20036707	34	7.2	33	74	11	185	42	14	11	31	1.81
20036463--20036699	68	3.5	68	87	1	298	43	14	11	30	1.80
20037802--20037997	104	1.9	104	97	0	374	27	13	25	33	1.94
20038088--20038122	17	2.1	17	88	0	52	22	11	28	37	1.89
20038160--20038358	103	1.9	104	97	1	382	32	12	17	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20040332--20040372	22	1.9	21	85	5	55	68	0	4	26	1.10
20043773--20043808	16	2.3	16	90	4	56	44	0	19	36	1.51
20044039--20044075	9	4.1	9	92	0	65	45	13	10	29	1.77
20050266--20050350	38	2.2	38	95	4	154	48	4	8	38	1.54
20050440--20050472	13	2.4	14	90	5	50	60	6	0	33	1.21
20050517--20050565	16	2.8	17	77	14	55	59	0	2	38	1.09
20050511--20050561	9	5.7	9	77	15	52	64	0	1	33	1.05
20055275--20055349	5	15.0	5	80	5	80	38	20	5	36	1.75
20055572--20055607	14	2.6	14	91	4	56	44	22	0	33	1.53
20057476--20057556	30	2.7	30	79	12	94	58	2	8	30	1.42
20058693--20058743	25	2.0	25	96	0	93	31	39	17	11	1.86
20059085--20059139	5	11.4	5	86	11	53	61	5	0	32	1.19
20064818--20064842	3	8.3	3	100	0	50	32	0	36	32	1.58
20064843--20064872	15	2.0	15	100	0	60	13	0	20	66	1.24
20064847--20064912	3	22.0	3	84	0	78	24	0	7	68	1.15
20069894--20069922	12	2.4	12	100	0	58	58	0	34	6	1.25
20070655--20070723	18	3.8	18	75	9	59	13	8	2	75	1.15
20070651--20070713	19	3.2	20	74	19	60	11	9	3	76	1.13
20070729--20070780	17	3.0	17	83	5	68	25	1	1	71	1.07
20070790--20070856	25	2.9	22	79	12	64	44	1	2	50	1.26
20070814--20070969	36	4.4	35	80	13	162	39	2	1	56	1.21
20070812--20070867	23	2.4	25	80	17	66	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20070829--20070967	36	4.0	34	83	5	163	38	2	1	56	1.23
20070924--20070981	21	2.8	21	84	10	66	37	1	1	58	1.18
20070933--20070991	21	2.8	22	78	17	70	40	0	0	59	0.97
20070936--20071000	21	3.0	21	82	11	69	43	1	0	55	1.09
20070961--20071019	27	2.1	27	84	6	73	49	1	0	49	1.11
20070999--20071033	13	2.6	14	91	8	56	51	0	0	48	1.00
20070945--20071014	29	2.4	29	79	11	72	47	1	0	51	1.09
20071110--20071147	13	3.0	13	88	7	60	44	0	0	55	0.99
20071240--20071303	22	2.9	22	88	9	87	57	0	0	42	0.98
20071330--20071374	9	5.0	9	84	10	56	73	4	0	22	1.01
20071395--20071449	19	2.8	19	80	2	74	78	1	9	10	1.05
20072216--20072269	23	2.2	24	87	6	74	29	42	12	14	1.83
20072697--20072722	1	26.0	1	100	0	52	0	0	0	100	0.00
20074036--20074360	40	8.1	40	97	0	589	27	29	20	22	1.98
20076496--20076611	58	2.0	58	98	0	223	17	20	33	28	1.95
20081072--20081172	50	2.0	50	100	0	202	37	32	13	15	1.87
20082420--20082724	161	1.9	161	100	0	610	27	25	17	30	1.97
20082701--20082792	40	2.3	40	83	1	114	26	29	21	22	1.99
20082777--20082854	40	1.9	41	82	10	97	26	28	21	23	1.99
20089200--20089228	1	29.0	1	100	0	58	0	0	0	100	0.00
20090572--20090764	80	2.4	80	82	5	221	26	29	20	23	1.99
20090542--20090711	40	4.3	40	90	0	234	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20090542--20090764	120	1.9	119	81	6	272	26	28	21	24	1.99
20090696--20090773	40	1.9	41	82	10	97	26	28	21	23	1.99
20095050--20095117	36	1.9	36	81	3	84	32	10	19	38	1.85
20100681--20100913	42	5.5	42	83	7	274	36	23	15	24	1.94
20109905--20110034	65	2.0	65	93	0	224	50	18	14	16	1.78
20111648--20111741	12	7.5	12	76	15	57	73	1	12	12	1.16
20111690--20111741	12	4.5	12	92	4	81	76	0	5	17	0.97
20111685--20111741	23	2.4	25	85	14	84	75	0	8	15	1.04
20117328--20117502	86	2.0	86	100	0	350	42	14	24	18	1.88
20117589--20117725	21	6.7	21	73	14	51	9	18	2	69	1.29
20117609--20117735	12	10.6	12	71	12	55	10	18	2	68	1.29
20117606--20117726	18	6.4	18	71	9	98	9	19	2	69	1.27
20117606--20117713	6	17.7	6	71	5	74	8	18	2	70	1.25
20118469--20118501	9	3.7	9	92	8	50	72	9	6	12	1.26
20126286--20126398	40	2.8	40	94	0	190	30	20	26	22	1.98
20130159--20130197	20	2.0	20	85	10	53	41	15	15	28	1.87
20140038--20140097	20	3.1	20	83	9	63	40	1	1	56	1.19
20140049--20140097	20	2.5	20	87	9	66	40	0	0	59	0.98
20140051--20140106	29	1.9	29	85	7	78	42	0	0	57	0.99
20140010--20140117	9	11.4	9	68	19	60	41	0	1	55	1.17
20143511--20143546	19	1.9	19	88	5	56	38	2	0	58	1.13
20146529--20146612	42	2.0	42	95	0	150	19	32	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20153939--20153999	30	2.0	32	87	6	90	45	1	6	45	1.39
20157219--20157359	38	3.7	37	80	3	156	40	26	17	14	1.89
20157208--20157359	76	2.0	76	84	2	198	39	27	17	15	1.90
20158743--20158803	28	2.2	27	80	11	70	34	24	11	29	1.91
20158853--20158932	29	2.8	28	81	5	97	41	17	12	28	1.86
20158825--20159166	29	11.7	29	68	15	75	36	19	14	29	1.91
20171376--20171492	28	4.2	27	75	4	117	30	20	18	29	1.97
20173796--20173849	28	2.0	27	85	3	72	33	14	25	25	1.95
20180136--20180183	23	2.1	23	100	0	96	20	29	8	41	1.81
20180335--20180372	5	7.6	5	100	0	76	81	0	0	18	0.69
20183524--20183568	21	2.2	21	84	4	56	64	4	8	22	1.40
20190323--20190406	42	2.0	42	97	0	159	28	16	15	39	1.89
20191233--20191416	58	3.2	58	82	3	194	24	17	19	38	1.93
20191234--20191399	29	5.8	29	81	5	176	25	17	18	38	1.92
20191265--20191444	87	2.1	85	81	6	202	23	18	20	37	1.94
20191265--20191416	29	5.3	29	79	3	128	23	18	19	39	1.92
20206530--20206599	35	2.0	35	100	0	140	37	28	8	25	1.85
20211031--20211083	27	2.0	27	92	0	88	28	24	11	35	1.90
20212744--20212827	27	3.3	25	83	11	116	29	1	3	65	1.17
20212792--20212876	24	3.7	24	75	13	72	36	3	1	58	1.23
20212853--20212948	38	2.5	37	83	10	104	27	1	6	65	1.23
20213230--20213281	11	4.7	11	87	0	77	23	30	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20213227--20213299	33	2.2	34	82	9	96	26	30	0	43	1.55
20213227--20213299	22	3.3	23	84	11	98	26	30	0	43	1.55
20213227--20213299	11	6.5	11	75	19	71	26	30	0	43	1.55
20214499--20214524	7	3.7	7	100	0	52	26	0	15	57	1.38
20215666--20215923	25	10.9	25	72	16	228	39	0	14	45	1.45
20215622--20215926	70	4.4	70	97	0	558	40	0	13	45	1.43
20215666--20215922	45	5.4	49	71	15	211	39	0	14	45	1.45
20216863--20217088	43	5.3	43	80	1	256	28	31	16	23	1.96
20216863--20217088	86	2.6	86	86	2	294	28	31	16	23	1.96
20216863--20217153	86	3.4	85	82	7	270	29	30	15	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161