genome.fa.s22.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  142  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44231168--44231339	61	2.9	58	69	11	150	50	5	1	43	1.35
44231372--44231598	77	2.9	77	96	0	418	43	9	7	40	1.65
44234152--44234180	15	1.9	15	100	0	58	62	0	27	10	1.28
44236425--44236587	42	3.9	42	79	5	159	35	20	17	26	1.95
44237337--44237369	17	1.9	17	100	0	66	57	6	6	30	1.47
44240121--44240444	146	2.2	146	90	5	508	25	16	14	43	1.85
44240494--44240565	31	2.4	31	79	6	85	18	8	15	58	1.61
44240195--44240661	245	1.9	246	86	7	676	26	13	11	48	1.77
44240534--44240794	135	1.9	133	92	3	434	24	15	11	48	1.78
44240677--44240912	107	2.2	104	85	8	298	25	13	12	49	1.76
44240143--44241038	379	2.3	380	91	4	1471	25	14	12	47	1.79
44241668--44241719	21	2.5	21	76	17	54	40	36	0	23	1.55
44241677--44241716	20	2.0	20	85	9	55	40	40	0	20	1.52
44241707--44241748	14	2.9	14	82	6	57	35	35	0	28	1.58
44241703--44241749	15	3.3	15	82	8	62	40	31	0	27	1.57
44241914--44241987	22	3.4	22	78	9	62	37	37	0	24	1.56
44242427--44242810	114	3.4	113	88	3	562	25	25	23	26	2.00
44242268--44242810	224	2.5	216	87	4	766	25	27	23	24	2.00
44252687--44252711	13	1.9	13	100	0	50	32	0	0	68	0.90
44252680--44252767	36	2.5	37	81	10	103	43	1	3	52	1.25
44269113--44269159	21	2.2	22	92	3	78	21	38	19	21	1.94
44275529--44275578	26	1.9	26	84	8	66	28	10	10	52	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44275600--44275639	17	2.4	17	86	0	53	40	2	0	57	1.12
44275930--44275961	14	2.4	13	94	5	55	15	0	9	75	1.05
44276693--44276750	29	2.0	29	90	3	91	36	0	6	56	1.26
44276752--44276790	21	1.9	20	84	5	51	53	2	5	38	1.37
44295100--44295156	28	2.0	29	93	3	98	14	10	8	66	1.44
44295107--44295165	28	2.1	28	84	6	75	15	8	11	64	1.49
44295481--44295535	19	3.3	19	63	36	54	54	10	3	30	1.52
44295482--44295552	30	2.4	30	97	0	133	59	11	2	26	1.46
44297129--44297166	15	2.5	15	84	12	51	65	0	2	31	1.06
44302479--44302535	23	2.4	25	77	16	68	45	5	1	47	1.35
44303677--44303726	24	2.0	25	84	3	66	54	2	10	34	1.45
44304386--44304430	19	2.4	19	82	10	56	37	4	0	57	1.19
44304674--44306543	933	2.0	933	100	0	3740	37	17	12	33	1.87
44308483--44308538	21	2.7	21	78	8	53	55	0	0	44	0.99
44314378--44314447	23	3.0	23	82	2	86	41	18	12	27	1.87
44314630--44314683	12	4.6	12	82	13	67	50	18	14	16	1.79
44314630--44314697	24	2.9	24	88	2	93	48	17	14	19	1.81
44319713--44319764	25	2.0	25	85	14	70	48	1	3	46	1.31
44321375--44321446	29	2.5	29	82	6	92	29	25	8	37	1.85
44332021--44332069	15	3.3	15	97	0	89	22	24	12	40	1.88
44348950--44348980	6	5.2	6	100	0	62	16	32	16	35	1.91
44351819--44351983	43	3.8	43	76	6	165	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44351819--44351988	86	2.0	85	82	7	211	30	25	17	27	1.97
44353532--44353594	30	2.1	30	93	0	108	57	14	3	25	1.52
44357610--44357681	3	23.3	3	72	18	51	30	6	2	59	1.38
44357622--44357682	12	5.2	11	75	13	59	32	8	1	57	1.38
44357661--44357685	12	2.1	12	100	0	50	32	0	8	60	1.26
44357994--44358027	16	2.1	16	89	10	52	17	2	5	73	1.16
44362767--44362899	41	3.2	41	85	4	135	21	27	20	30	1.98
44364863--44365008	41	3.6	41	91	1	213	19	30	20	29	1.97
44364863--44365036	82	2.1	82	82	2	215	21	28	20	29	1.98
44369602--44369706	54	2.0	53	81	12	126	60	2	2	33	1.26
44369699--44369759	21	3.0	21	83	11	90	52	4	1	40	1.33
44370225--44370285	28	2.3	25	83	8	77	32	3	1	62	1.21
44370311--44370368	20	3.0	19	78	12	57	37	0	3	58	1.15
44370198--44370447	9	27.6	9	65	20	60	32	2	4	61	1.27
44388040--44388066	14	1.9	14	100	0	54	29	7	0	62	1.22
44388439--44388469	16	1.9	16	100	0	62	58	3	0	38	1.15
44395804--44395873	11	6.8	11	80	18	80	57	0	1	41	1.08
44395807--44395862	28	2.0	28	89	6	87	58	0	1	39	1.08
44395777--44395890	39	2.8	38	90	7	165	61	0	1	35	1.12
44404059--44404113	28	2.0	28	100	0	110	40	14	14	30	1.86
44405010--44405061	23	2.3	23	83	9	63	51	15	17	15	1.76
44405405--44405432	13	2.2	13	100	0	56	50	21	7	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44407589--44407631	20	2.2	20	83	8	52	30	0	16	53	1.43
44407600--44407660	21	3.0	22	81	15	69	32	0	16	50	1.45
44407580--44407647	35	1.9	35	81	0	82	33	0	16	50	1.45
44407582--44407674	27	3.4	25	75	19	80	33	1	16	49	1.53
44408070--44408156	42	2.1	42	91	0	138	36	9	19	34	1.84
44411184--44411263	29	2.6	30	84	5	90	45	11	8	35	1.71
44421153--44421204	20	2.6	19	84	9	59	63	5	19	11	1.47
44423898--44423950	23	2.4	22	76	20	56	9	18	1	69	1.25
44426298--44426357	22	2.7	23	73	19	63	66	6	0	26	1.16
44426307--44426340	4	8.0	4	90	9	50	73	2	0	23	0.97
44438763--44438791	3	9.7	3	100	0	58	0	65	0	34	0.93
44439166--44439227	29	2.2	28	85	2	79	56	6	0	37	1.25
44440355--44440391	16	2.4	15	86	8	56	21	2	10	64	1.37
44440601--44440642	16	2.6	16	92	0	66	42	7	2	47	1.43
44447837--44447879	17	2.5	17	73	0	50	65	0	2	32	1.06
44451061--44451091	15	2.1	15	93	0	53	38	9	0	51	1.35
44463428--44463467	20	2.0	20	85	0	53	50	10	10	30	1.69
44463455--44463490	14	2.6	14	90	0	54	33	19	8	38	1.82
44466625--44466713	45	2.0	45	97	0	169	28	16	15	39	1.90
44469122--44469173	21	2.5	21	75	9	54	44	1	0	53	1.11
44469208--44469455	126	2.0	126	96	0	460	33	10	5	51	1.59
44474840--44474912	36	2.0	36	100	0	146	38	5	5	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44480232--44480259	14	2.0	14	100	0	56	21	7	28	42	1.79
44481569--44481614	3	15.3	3	100	0	92	67	0	0	32	0.91
44488704--44488784	30	2.7	31	78	12	80	54	1	1	43	1.16
44490300--44490382	42	2.0	42	97	0	157	37	9	20	32	1.85
44500562--44500987	114	3.7	114	78	4	466	30	19	23	26	1.98
44500778--44501175	188	2.1	188	94	0	688	31	18	23	26	1.97
44500960--44501310	113	3.1	112	79	8	415	30	19	23	26	1.98
44501332--44501381	17	3.0	17	94	2	84	34	0	16	50	1.45
44501422--44501497	7	10.9	7	74	5	64	17	1	35	46	1.56
44503725--44503841	18	6.2	18	65	27	64	44	18	1	35	1.60
44503725--44504027	25	12.2	25	86	7	413	45	20	0	33	1.56
44504019--44504072	9	5.7	10	79	20	55	42	20	0	37	1.52
44503993--44504058	18	3.6	18	84	10	89	46	18	0	34	1.49
44503858--44504072	18	12.5	18	64	32	68	45	20	0	33	1.52
44509523--44509593	21	3.4	21	80	0	79	33	18	45	2	1.64
44509817--44509850	14	2.4	14	95	0	59	17	8	20	52	1.71
44509910--44510202	42	7.0	42	83	2	257	28	20	20	30	1.98
44510005--44510207	42	4.8	42	87	3	284	24	22	21	32	1.98
44509919--44510207	84	3.5	83	83	3	337	28	20	20	30	1.98
44513394--44513446	14	3.8	14	74	0	52	28	13	22	35	1.92
44516363--44516436	26	2.9	25	86	6	94	36	18	6	37	1.78
44520446--44520644	90	2.2	90	80	3	213	28	14	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44525361--44525392	2	16.0	2	100	0	64	0	50	0	50	1.00
44527946--44528034	44	2.0	44	100	0	178	50	15	6	26	1.69
44530764--44530812	19	2.5	20	83	12	57	32	14	4	48	1.62
44530764--44530812	21	2.5	20	81	18	59	32	14	4	48	1.62
44531038--44531105	30	2.3	30	82	5	75	45	5	22	26	1.75
44531928--44532256	160	2.1	160	100	0	658	39	9	18	31	1.83
44533005--44533060	25	2.2	27	81	9	64	30	0	21	48	1.51
44546445--44546469	13	1.9	13	100	0	50	44	8	0	48	1.32
44561136--44561165	8	3.8	8	100	0	60	0	40	10	50	1.36
44577896--44578009	51	2.2	50	76	10	115	37	0	1	59	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161