genome.fa.s22.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  118  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37307893--37307924	4	7.8	4	93	6	55	53	0	0	46	1.00
37314490--37314613	54	2.3	54	81	0	140	20	33	19	26	1.97
37315654--37315894	75	3.2	75	84	2	306	32	21	21	23	1.98
37315767--37315889	35	3.4	35	68	10	102	33	23	21	21	1.97
37321588--37321648	26	2.3	26	85	0	77	40	16	19	22	1.90
37326374--37326425	27	2.0	26	88	3	77	7	32	1	57	1.38
37331836--37332075	28	8.5	28	91	3	349	26	11	27	34	1.91
37331864--37332074	57	3.7	57	95	1	363	27	11	26	34	1.91
37345682--37345706	9	2.8	9	100	0	50	48	0	52	0	1.00
37351029--37351260	108	2.1	108	100	0	464	40	15	11	31	1.83
37351645--37351700	28	2.0	28	100	0	112	35	14	28	21	1.92
37352222--37352515	147	2.0	147	99	0	579	44	5	8	41	1.58
37354280--37354676	44	8.6	42	67	20	154	28	20	18	32	1.96
37354598--37354690	44	2.1	44	91	0	150	27	22	19	30	1.98
37354266--37354676	142	2.9	142	95	0	750	27	20	18	33	1.96
37355686--37355721	7	5.0	7	86	6	54	38	16	0	44	1.48
37355679--37355721	22	2.0	22	95	0	77	37	16	2	44	1.60
37356485--37356518	17	2.0	17	88	0	50	79	2	14	2	0.97
37362454--37362480	6	4.5	6	100	0	54	33	0	0	66	0.92
37375116--37375377	39	6.7	40	88	7	337	24	27	22	25	2.00
37377806--37377862	27	2.2	26	83	3	69	28	3	7	61	1.39
37380626--37380671	24	2.0	24	86	4	67	50	15	13	21	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37389181--37389226	24	2.0	23	86	4	65	50	15	13	21	1.78
37392813--37392951	50	2.8	50	80	0	170	21	29	21	27	1.99
37395712--37395785	37	2.0	37	94	0	130	31	20	20	28	1.97
37399932--37400019	43	2.0	43	100	0	176	29	13	18	38	1.89
37404275--37404327	24	2.1	26	89	6	83	26	0	24	49	1.51
37408971--37409091	41	3.0	41	93	0	197	29	23	19	28	1.98
37415765--37415880	43	2.7	43	76	12	121	23	20	26	29	1.99
37419928--37420127	45	4.5	44	80	5	179	34	26	15	25	1.95
37419966--37420147	90	2.0	90	84	0	238	32	24	16	26	1.96
37423733--37423858	59	2.1	59	97	0	234	37	4	19	38	1.73
37424922--37425133	107	2.0	107	95	0	379	32	19	19	28	1.96
37427417--37427811	44	9.0	44	75	2	355	29	26	16	27	1.97
37427417--37427813	132	3.0	132	96	0	722	29	26	16	27	1.97
37436002--37436213	107	2.0	107	95	0	379	32	19	19	28	1.96
37441579--37441625	23	2.0	23	88	8	69	57	6	2	34	1.36
37448505--37448665	80	2.0	80	98	0	313	37	15	9	36	1.81
37453010--37453077	27	2.5	27	85	0	91	33	22	8	35	1.85
37462747--37462842	31	3.1	31	95	3	174	31	9	13	45	1.75
37465045--37465076	16	2.0	16	93	0	55	37	9	18	34	1.83
37466344--37466546	27	7.6	26	79	9	203	34	16	12	35	1.87
37466819--37466885	34	2.0	34	87	0	98	28	22	20	28	1.99
37469939--37470125	43	4.3	43	80	4	198	24	27	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37469919--37470125	86	2.4	86	79	3	229	24	28	18	28	1.98
37470448--37470496	21	2.3	21	85	0	62	4	42	16	36	1.67
37470493--37470636	66	2.2	66	84	2	191	15	25	18	40	1.90
37472272--37472315	13	3.1	14	84	15	56	43	20	6	29	1.78
37473946--37474044	47	2.1	48	86	1	137	43	3	8	45	1.49
37474796--37474829	14	2.4	14	90	9	52	29	44	2	23	1.68
37474807--37474852	22	2.1	22	83	0	56	39	41	2	17	1.62
37475606--37475988	41	9.4	41	84	0	471	36	25	16	21	1.93
37481072--37481126	20	2.5	22	77	17	60	16	3	12	67	1.36
37498385--37498654	47	5.7	47	98	1	504	31	8	30	29	1.88
37498773--37498851	37	2.1	37	90	0	122	24	18	31	25	1.98
37501715--37502129	138	3.0	135	90	3	645	40	8	4	45	1.56
37502192--37502224	17	1.9	17	93	0	57	51	9	0	39	1.34
37504031--37504063	17	1.9	17	100	0	66	24	27	6	42	1.78
37507113--37507165	17	3.1	17	86	0	79	22	22	3	50	1.64
37522624--37522695	35	2.1	35	86	5	101	30	31	8	29	1.87
37527566--37527598	17	2.0	17	88	5	50	18	3	27	51	1.60
37528084--37528126	14	3.0	14	79	3	50	20	37	6	34	1.80
37533079--37533199	35	3.4	35	67	18	106	39	7	5	47	1.56
37534678--37534731	24	2.2	24	93	0	90	14	20	0	64	1.28
37534671--37534729	31	1.9	30	82	3	73	13	20	0	66	1.25
37538204--37538244	21	2.0	21	95	0	73	56	4	26	12	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37541418--37541638	43	5.2	43	89	0	309	30	27	18	23	1.97
37545781--37545816	18	2.0	18	100	0	72	27	27	11	33	1.91
37547041--37547095	23	2.4	23	80	14	69	30	45	0	23	1.53
37547289--37547336	25	1.9	25	86	0	69	62	2	0	35	1.07
37547375--37547450	30	2.6	30	79	10	77	34	36	0	28	1.58
37547414--37547454	21	1.9	22	90	5	66	36	34	0	29	1.58
37547572--37547603	15	2.1	16	94	5	57	46	31	0	21	1.52
37548374--37548460	41	2.1	41	95	0	156	28	25	24	21	1.99
37548351--37548569	109	2.0	109	99	0	429	29	19	20	30	1.97
37548483--37548641	41	3.9	41	94	0	273	28	27	23	20	1.99
37549770--37550019	24	10.7	24	71	13	164	34	6	4	55	1.44
37549768--37549935	70	2.4	69	78	9	180	33	6	4	55	1.45
37549798--37549919	45	2.7	46	78	13	126	36	6	1	55	1.36
37549736--37550009	69	4.0	68	74	11	202	34	6	4	54	1.47
37556525--37556644	46	2.6	46	80	2	125	41	21	15	20	1.90
37556514--37556675	23	7.0	23	71	9	89	42	20	14	22	1.88
37560698--37560733	18	2.0	18	88	0	54	72	8	5	13	1.27
37560913--37560951	19	2.0	20	85	5	53	46	2	38	12	1.56
37576846--37576919	32	2.3	32	83	0	85	20	36	24	18	1.95
37582622--37582666	22	2.0	22	83	8	56	40	6	2	51	1.41
37583047--37583083	18	2.0	19	89	5	58	5	43	0	51	1.24
37600593--37600661	21	3.2	21	64	11	59	53	2	10	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600586--37600673	43	2.0	43	100	0	176	52	2	9	36	1.46
37610598--37610788	102	1.9	102	97	0	364	31	9	20	38	1.85
37610799--37610854	15	4.0	15	71	17	57	46	0	0	53	1.00
37610786--37610907	41	3.0	43	73	21	125	43	0	2	53	1.19
37610847--37610887	18	2.4	17	84	11	57	41	2	2	53	1.27
37611044--37611140	45	2.2	45	85	5	126	32	28	4	34	1.76
37611118--37611150	16	2.1	16	94	0	57	21	33	3	42	1.68
37611386--37611729	174	2.0	174	90	3	548	45	10	21	22	1.82
37619160--37619403	49	5.0	48	86	4	278	32	9	11	46	1.71
37621790--37621833	15	2.9	17	71	28	53	54	0	9	36	1.32
37622461--37622487	12	2.2	12	100	0	54	0	44	0	55	0.99
37624990--37625054	20	3.1	21	86	6	87	29	1	0	69	0.98
37626847--37626921	38	2.0	38	81	0	87	33	26	4	36	1.75
37627607--37627650	22	1.9	24	86	9	65	40	11	2	45	1.53
37627735--37627800	33	2.0	33	94	5	116	33	24	3	39	1.71
37630829--37631619	391	2.0	395	93	1	1340	33	10	20	35	1.87
37632311--37632368	23	2.4	25	88	5	84	22	5	25	46	1.72
37634692--37634725	17	2.0	17	94	0	59	67	5	0	26	1.13
37641879--37641921	21	2.0	21	86	0	59	23	16	37	23	1.94
37648267--37648345	23	3.3	23	91	3	113	24	6	25	44	1.77
37648638--37648739	52	2.0	52	86	7	145	28	21	34	15	1.94
37649668--37649727	21	2.9	21	94	0	102	31	10	13	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37649863--37649914	19	2.7	19	72	21	54	40	11	7	40	1.70
37649941--37649984	22	1.9	24	86	9	65	40	13	2	43	1.57
37650706--37650744	20	2.0	19	85	5	51	71	0	12	15	1.14
37651681--37651801	59	2.1	58	87	7	176	52	0	0	46	1.12
37651796--37651908	33	3.4	32	72	8	93	36	2	2	58	1.26
37653329--37653368	18	2.2	18	91	8	64	75	0	2	22	0.93
37653338--37653389	19	2.9	17	78	13	50	69	3	0	26	1.06
37653838--37653875	7	5.4	7	93	0	58	23	0	31	44	1.54
37653833--37653875	21	2.0	21	90	0	68	25	0	34	39	1.56
37659835--37659865	16	1.9	16	100	0	62	64	0	12	22	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161