genome.fa.s22.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  93  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29526850--29526879	15	2.0	15	100	0	60	26	13	20	40	1.89
29526997--29527212	90	2.4	90	80	4	233	33	16	21	28	1.95
29529461--29529514	21	2.6	21	90	0	81	25	37	22	14	1.93
29533832--29533873	20	2.1	19	83	16	50	26	9	16	47	1.77
29544220--29544252	17	1.9	17	93	0	57	45	0	0	54	0.99
29544291--29544327	16	2.3	16	86	13	58	40	0	0	59	0.97
29544313--29544348	18	1.9	19	88	5	56	55	0	2	41	1.14
29544312--29544388	31	2.5	30	76	19	86	49	0	2	48	1.15
29544458--29544491	17	1.9	18	88	5	52	50	0	2	47	1.16
29550377--29550417	21	2.0	21	90	0	64	29	21	29	19	1.98
29556498--29556547	23	2.2	23	82	7	57	22	2	10	66	1.32
29560704--29560843	40	3.5	40	78	6	151	27	15	25	32	1.96
29571548--29571608	27	2.3	27	85	0	77	37	26	4	31	1.77
29571563--29571620	27	2.1	27	87	0	80	31	20	8	39	1.83
29586463--29586509	23	2.0	23	84	8	60	51	0	6	42	1.27
29593598--29593629	3	10.7	3	100	0	64	31	0	0	68	0.90
29593775--29594272	44	11.5	43	68	15	249	27	24	20	27	1.99
29593771--29594272	217	2.3	217	93	0	862	27	24	20	27	1.99
29607754--29607779	3	8.7	3	100	0	52	30	0	0	69	0.89
29608183--29608226	22	1.9	24	86	9	65	31	0	2	65	1.05
29617114--29617156	21	2.0	22	81	4	52	39	0	2	58	1.11
29620520--29620707	94	2.0	94	85	2	252	30	18	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29620620--29620892	63	4.3	63	72	9	212	32	17	12	37	1.87
29620749--29620852	27	3.5	27	67	20	73	32	21	11	34	1.89
29620620--29620853	130	1.8	126	85	3	324	32	17	11	38	1.86
29628459--29628492	16	2.1	16	94	0	59	47	0	17	35	1.48
29632604--29632771	85	2.0	85	92	2	286	33	11	31	23	1.91
29643719--29643831	62	1.9	57	82	12	138	36	11	0	51	1.44
29643965--29644009	21	2.2	20	88	4	63	44	4	2	48	1.35
29649104--29649205	41	2.5	41	90	3	152	27	19	25	27	1.99
29653741--29653886	73	2.0	73	97	0	274	30	16	20	32	1.95
29655258--29655301	15	3.1	15	87	12	58	68	0	20	11	1.20
29656561--29656872	88	3.5	88	92	0	498	29	22	24	24	1.99
29656900--29657049	50	3.0	50	72	0	165	27	24	28	20	1.99
29657143--29657390	50	5.0	49	65	7	149	29	21	26	22	1.99
29656885--29657426	100	5.4	100	79	8	607	30	22	24	21	1.99
29657109--29657492	100	3.8	100	85	2	304	30	22	23	22	1.99
29659166--29659280	62	1.9	58	82	10	142	36	11	0	51	1.44
29659398--29659434	9	4.0	9	86	6	56	40	0	2	56	1.13
29659419--29659474	21	2.6	22	75	13	62	46	3	1	48	1.30
29661774--29661813	19	2.0	21	85	9	57	57	0	0	42	0.98
29663638--29663908	124	2.2	125	86	7	383	29	16	21	31	1.96
29666996--29667248	29	8.7	29	97	0	470	28	0	26	44	1.60
29667347--29667439	29	3.2	29	95	3	170	31	0	24	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29669756--29669789	15	2.3	15	90	5	52	67	5	0	26	1.13
29669887--29669943	28	2.0	28	86	6	80	57	1	1	38	1.19
29669886--29669925	19	2.0	21	85	9	57	57	0	0	42	0.98
29669977--29670025	22	2.2	21	80	16	55	30	0	32	36	1.58
29669980--29670079	52	1.9	52	89	0	155	36	0	31	33	1.58
29670032--29670100	22	3.1	22	91	0	111	40	0	27	31	1.57
29674843--29674910	25	2.7	25	83	0	82	27	20	26	25	1.99
29681438--29681558	58	2.1	58	98	0	233	42	11	12	33	1.78
29682115--29682167	16	3.5	16	73	16	51	64	0	1	33	1.05
29682144--29682178	14	2.4	15	90	4	54	68	5	0	25	1.11
29684686--29684758	29	2.6	29	84	6	87	47	0	2	49	1.15
29685310--29685343	12	2.8	12	81	0	50	67	11	0	20	1.21
29686677--29686799	56	2.2	54	81	5	131	46	8	0	45	1.33
29686708--29686799	28	3.4	27	94	5	159	40	9	0	50	1.36
29687117--29687183	19	3.6	19	77	4	82	35	11	1	50	1.48
29687267--29687431	82	2.0	82	98	0	321	44	9	6	38	1.64
29687500--29687558	19	3.2	19	82	4	84	49	0	13	37	1.43
29688133--29688191	27	2.2	27	87	0	82	15	28	25	30	1.96
29688241--29688305	28	2.4	28	94	2	114	47	0	10	41	1.38
29689756--29689879	54	2.3	54	84	0	158	25	25	29	19	1.99
29693482--29693521	16	2.5	16	91	0	62	35	35	7	22	1.82
29694642--29694723	9	8.7	9	74	10	74	24	7	26	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29694642--29694694	20	2.8	20	82	5	65	24	7	26	41	1.81
29694651--29694723	29	2.5	29	93	0	119	24	8	26	41	1.83
29694683--29694724	20	2.1	20	90	0	66	21	7	26	45	1.77
29699165--29699384	21	10.5	21	71	7	135	43	17	22	16	1.88
29699178--29699405	84	2.7	84	83	4	255	42	17	23	16	1.89
29699178--29699387	42	5.0	42	83	4	219	42	18	22	16	1.89
29701461--29701517	24	2.4	25	79	8	64	50	3	1	43	1.29
29702021--29702045	11	2.3	11	100	0	50	60	0	8	32	1.26
29706356--29706382	12	2.2	12	100	0	54	14	25	22	37	1.93
29706517--29706597	41	2.0	41	90	0	126	23	18	30	27	1.98
29707381--29707410	15	2.0	15	100	0	60	20	0	46	33	1.51
29707628--29707657	7	4.3	7	91	0	51	26	0	36	36	1.57
29707099--29708180	302	3.6	302	90	4	1646	30	2	25	41	1.69
29707930--29707959	7	4.3	7	91	0	51	26	0	36	36	1.57
29708237--29708263	12	2.2	12	100	0	54	14	25	22	37	1.93
29708398--29708478	41	2.0	41	90	0	126	23	18	30	27	1.98
29709262--29709291	15	2.0	15	100	0	60	20	0	46	33	1.51
29708995--29709715	289	2.4	293	84	7	906	30	2	25	41	1.68
29709509--29709538	7	4.3	7	91	0	51	26	0	36	36	1.57
29713821--29713911	43	2.1	43	83	2	112	32	10	12	43	1.77
29714262--29714571	43	7.3	43	84	1	329	26	17	28	27	1.98
29722759--29722796	20	1.9	20	94	0	67	55	0	10	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29724254--29724283	16	1.9	15	93	6	51	16	46	10	26	1.78
29728642--29728699	20	3.0	19	82	7	73	68	5	1	24	1.19
29729411--29729464	19	2.8	19	83	8	56	59	0	5	35	1.21
29729294--29729453	10	16.5	10	67	21	76	58	1	3	36	1.22
29729294--29729471	9	18.7	9	71	18	112	60	1	3	35	1.21
29729418--29729464	19	2.4	20	82	3	60	59	0	6	34	1.23
29740382--29740644	40	6.6	40	88	3	325	24	20	27	26	1.99
29740421--29740679	80	3.3	80	85	3	256	25	20	27	25	1.99
29758477--29759064	292	2.0	290	86	5	814	26	30	17	24	1.97
29760549--29760582	10	3.3	10	84	8	50	55	2	2	38	1.30
29760569--29760608	20	2.0	21	85	5	55	65	2	5	27	1.27
29760731--29760789	29	2.0	30	87	9	86	32	10	11	45	1.74
29760742--29760798	30	1.9	29	82	10	71	35	12	8	43	1.73
29770644--29770682	17	2.3	17	86	8	53	28	2	33	35	1.71
29775005--29775275	81	3.3	81	80	5	228	16	19	19	45	1.86
29777038--29777143	18	5.9	18	78	0	86	17	17	34	29	1.94
29779753--29779885	64	2.1	64	97	0	248	26	16	30	27	1.97
29780642--29780688	24	2.0	24	83	8	60	42	2	10	44	1.51
29782023--29782059	17	2.2	17	95	0	65	62	8	10	18	1.52
29782277--29782336	23	2.8	22	80	9	79	71	3	3	21	1.15
29784887--29784917	16	1.9	16	93	0	53	54	9	3	32	1.49
29784876--29784940	27	2.3	27	86	5	85	53	10	4	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29784914--29784950	18	2.1	18	94	0	65	62	8	10	18	1.52
29790487--29790567	39	2.1	39	97	0	153	39	14	7	38	1.75
29791031--29791079	25	2.0	25	83	0	62	46	22	2	28	1.63
29792263--29792305	22	2.0	22	85	0	59	11	16	4	67	1.38
29792354--29792401	24	2.0	24	83	4	60	43	8	2	45	1.45
29792670--29792748	29	2.6	29	78	11	79	27	13	11	46	1.78
29792963--29793011	20	2.5	20	86	6	64	63	6	0	30	1.19
29793736--29793766	7	4.4	7	100	0	62	38	0	0	61	0.96
29795306--29795348	13	3.5	13	75	18	56	48	13	0	37	1.43
29795306--29795357	23	2.3	23	96	0	95	50	13	0	36	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161