genome.fa.s22.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  129  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40545019--40545046	14	2.0	14	100	0	56	35	21	14	28	1.92
40545666--40545939	145	1.9	145	95	0	494	31	13	18	36	1.89
40546713--40546913	43	4.5	43	75	11	154	31	29	16	21	1.96
40546713--40546880	92	1.8	91	83	7	223	30	29	18	21	1.97
40551529--40551574	23	2.0	23	83	8	58	19	0	6	73	1.04
40552254--40552278	7	3.6	7	100	0	50	44	56	0	0	0.99
40552269--40552430	82	2.0	82	90	2	254	45	27	1	25	1.61
40552272--40552455	82	2.2	82	82	3	228	46	26	1	25	1.60
40552517--40552548	14	2.2	15	94	5	57	37	31	0	31	1.58
40552904--40553304	41	10.2	41	81	13	461	30	23	20	25	1.99
40553124--40553259	31	4.0	32	76	18	141	30	23	20	25	1.98
40553083--40553301	72	3.0	72	97	1	411	30	24	20	25	1.99
40560962--40561044	43	1.9	43	90	4	132	34	27	14	22	1.93
40569265--40569325	22	2.8	22	75	5	61	34	22	24	18	1.96
40576543--40576797	82	3.2	80	86	6	347	27	10	12	50	1.72
40576543--40576841	158	1.9	159	85	2	413	27	11	12	49	1.74
40580213--40580285	25	2.9	25	79	4	76	27	23	20	28	1.99
40580442--40580500	31	1.9	30	83	10	75	40	6	15	37	1.74
40584539--40584735	41	4.8	41	92	5	317	28	20	22	27	1.99
40584966--40585030	33	2.0	33	81	0	76	29	9	26	35	1.87
40592217--40592495	41	6.8	41	95	3	481	29	21	22	27	1.99
40592712--40592775	33	2.0	32	90	3	101	26	9	25	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40592719--40592792	33	2.3	33	80	2	87	28	8	25	37	1.84
40595260--40595365	25	4.3	25	72	10	92	32	22	26	18	1.97
40595433--40595489	26	2.3	25	82	8	71	36	24	22	15	1.94
40600905--40600940	18	2.0	18	88	0	54	55	27	0	16	1.42
40601389--40601456	29	2.3	30	87	10	95	57	2	0	39	1.14
40602860--40603198	33	9.7	33	68	22	162	32	27	18	21	1.97
40602861--40603073	75	2.8	75	92	1	336	31	27	18	22	1.97
40602942--40603203	102	2.5	102	89	3	389	32	28	18	20	1.96
40609078--40609108	11	2.8	11	95	0	53	35	19	19	25	1.95
40613511--40613550	21	1.9	21	85	10	55	22	15	17	45	1.85
40613788--40613822	12	2.9	12	82	0	52	25	8	17	48	1.75
40614773--40614803	15	2.1	15	93	0	53	48	6	0	45	1.28
40615218--40615294	9	8.4	9	84	8	84	42	25	9	22	1.82
40617158--40617328	86	2.0	86	98	0	333	26	17	35	19	1.94
40620466--40620493	14	2.0	14	100	0	56	50	0	7	42	1.30
40620483--40620556	21	3.2	21	66	20	58	52	9	4	33	1.53
40620480--40620588	48	2.3	48	98	0	209	50	8	6	34	1.58
40620488--40620564	24	3.2	24	62	20	61	53	9	3	33	1.51
40620427--40620651	110	2.1	109	90	0	351	49	9	6	34	1.61
40620504--40620583	27	3.2	27	64	20	73	50	8	7	33	1.62
40620515--40620588	24	3.1	24	64	21	64	48	8	8	35	1.62
40620526--40620650	62	2.0	62	93	0	214	48	7	6	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40623715--40623764	14	3.4	14	86	13	66	0	28	2	70	0.99
40623830--40623908	27	2.9	27	76	0	86	22	27	25	24	2.00
40623954--40624013	31	1.9	31	82	0	75	20	16	28	35	1.94
40624364--40624441	21	3.7	21	64	16	61	34	1	7	56	1.36
40624393--40624419	13	2.1	13	100	0	54	22	0	14	62	1.31
40624373--40624459	43	2.1	40	87	10	122	27	1	9	62	1.33
40625359--40625391	14	2.4	14	94	0	57	39	0	45	15	1.46
40627673--40627718	19	2.4	19	82	14	58	56	2	0	41	1.11
40627677--40627719	18	2.4	18	88	11	63	55	2	0	41	1.12
40647908--40647956	24	2.0	24	84	0	62	55	10	4	30	1.52
40649871--40649922	24	2.2	24	85	0	68	53	9	3	32	1.51
40650103--40650135	16	2.2	15	89	10	50	42	21	0	36	1.53
40653741--40654003	131	2.0	131	95	1	474	30	30	9	30	1.89
40658322--40658376	26	2.1	26	86	10	76	65	0	5	29	1.15
40658321--40658390	22	3.0	22	82	14	70	64	0	5	30	1.17
40659306--40659443	40	3.5	39	75	6	118	28	16	24	30	1.97
40659941--40659971	2	15.5	2	100	0	62	0	0	48	51	1.00
40661099--40661142	15	2.9	15	77	12	54	25	38	13	22	1.91
40662985--40663258	137	2.0	138	82	5	331	33	26	20	19	1.96
40665758--40665790	15	2.2	15	94	0	57	36	0	6	57	1.23
40668096--40668156	28	2.1	31	84	9	83	39	3	4	52	1.39
40670557--40670605	24	2.0	24	100	0	98	44	8	16	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40678849--40678903	26	2.1	26	89	0	83	34	9	30	25	1.87
40681764--40681792	15	1.9	15	100	0	58	37	0	27	34	1.57
40683257--40683328	38	1.9	38	85	2	101	30	18	16	34	1.93
40696362--40696402	21	2.0	21	85	9	57	34	7	12	46	1.69
40697480--40697570	44	2.1	44	91	4	148	28	10	10	49	1.72
40703178--40703213	2	18.5	2	91	5	56	44	0	2	52	1.15
40707683--40707745	30	2.1	30	93	0	108	28	3	11	57	1.49
40709522--40709552	16	1.9	16	93	0	53	38	0	3	58	1.15
40711603--40711650	25	1.9	25	86	0	69	62	2	0	35	1.07
40711593--40711647	12	4.5	12	76	13	58	61	1	0	36	1.06
40713090--40713134	21	2.3	19	84	7	54	28	2	11	57	1.45
40714192--40714237	25	2.0	23	84	16	60	36	23	0	39	1.55
40714471--40714589	57	2.1	58	84	4	152	26	17	7	47	1.74
40714829--40714970	71	2.0	71	95	0	257	26	16	17	38	1.91
40717702--40717769	29	2.3	29	82	0	82	22	16	19	42	1.89
40718053--40718167	51	2.3	51	93	0	194	27	28	0	43	1.55
40718168--40718233	31	2.2	31	88	2	98	37	0	0	62	0.96
40719088--40719180	30	3.1	30	79	11	102	31	22	4	41	1.73
40720636--40720667	16	2.0	16	93	0	55	37	9	9	43	1.69
40720701--40720743	17	2.5	17	88	0	68	32	16	9	41	1.80
40720723--40720765	21	2.0	21	86	8	61	46	13	6	32	1.71
40720755--40720797	17	2.5	17	81	11	52	34	9	9	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40726477--40726529	12	4.3	13	80	19	53	81	7	7	3	0.99
40726518--40726561	16	2.8	16	100	0	88	75	6	18	0	1.02
40727399--40727457	30	2.0	30	82	0	73	32	11	6	49	1.66
40727429--40728798	77	17.8	76	89	5	1670	28	15	18	37	1.92
40727427--40728798	152	8.9	154	89	4	1620	28	15	18	37	1.92
40727445--40728872	76	18.6	74	86	5	734	28	15	19	36	1.92
40729087--40729204	30	4.0	31	76	10	113	35	20	3	40	1.69
40730059--40730314	18	14.5	18	73	10	156	29	15	10	44	1.80
40730060--40730194	35	3.9	35	80	7	157	28	18	10	42	1.83
40730062--40730304	53	4.6	54	73	11	171	30	16	9	43	1.80
40730061--40730313	35	7.2	33	72	14	125	29	15	10	44	1.80
40730311--40730367	17	3.4	17	72	0	51	22	10	7	59	1.54
40730419--40730494	17	4.5	17	68	17	50	30	9	7	52	1.62
40730414--40730507	34	2.8	34	76	0	107	29	10	8	51	1.66
40730555--40730586	16	2.0	16	93	0	55	37	9	9	43	1.69
40730620--40730662	17	2.5	17	88	0	68	32	16	9	41	1.80
40730642--40730684	21	2.0	21	86	8	61	46	13	6	32	1.71
40730619--40730726	55	1.9	57	85	10	152	36	13	9	40	1.77
40730674--40730716	17	2.5	17	81	11	52	34	9	9	46	1.68
40731403--40731427	7	3.6	7	100	0	50	28	0	12	60	1.32
40732079--40732113	18	1.9	18	88	0	52	25	34	8	31	1.86
40732514--40732582	25	2.7	25	84	2	93	47	2	11	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40732578--40732673	18	5.7	18	75	16	98	47	23	0	28	1.52
40732585--40732945	47	7.2	47	80	14	407	44	27	0	27	1.57
40732603--40732760	29	5.8	29	76	12	149	45	27	0	26	1.54
40732650--40732760	29	3.8	29	93	1	168	45	27	0	27	1.54
40732735--40732827	18	5.6	18	69	17	83	46	27	1	24	1.60
40732603--40732914	106	3.0	105	79	14	331	44	28	0	26	1.57
40732803--40732914	29	3.8	29	91	2	188	43	30	0	25	1.55
40732595--40732942	153	2.3	153	91	2	574	45	27	0	26	1.56
40732679--40732932	124	2.0	121	82	7	296	44	27	0	26	1.57
40732891--40732932	18	2.3	18	95	0	75	47	23	0	28	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161