genome.fa.s22.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  148  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46212254--46212468	113	1.9	113	88	1	324	28	18	8	44	1.79
46212254--46212481	56	4.0	56	86	1	303	28	18	7	45	1.78
46213844--46214049	103	2.0	103	91	0	333	34	16	18	30	1.93
46219963--46220033	25	2.8	25	78	2	70	23	21	18	36	1.95
46220174--46220241	30	2.4	28	83	9	91	39	2	20	36	1.68
46220176--46220233	30	1.9	30	92	0	98	39	3	18	37	1.68
46236407--46236457	24	2.1	25	82	10	61	7	31	1	58	1.37
46236676--46236712	20	1.9	18	89	10	56	37	2	5	54	1.38
46240543--46240580	11	3.2	12	82	17	53	60	0	2	36	1.11
46240525--46240606	39	2.0	41	81	11	98	64	0	1	34	1.01
46244986--46245021	17	2.2	17	90	5	56	8	5	36	50	1.56
46245485--46245845	44	8.2	44	67	8	187	28	23	18	29	1.98
46245457--46246622	132	8.8	132	90	0	1712	28	24	18	28	1.98
46252654--46252686	13	2.6	13	90	4	50	54	9	6	30	1.56
46252996--46253030	17	2.1	17	89	10	54	82	0	5	11	0.82
46252996--46253030	18	2.0	17	88	5	52	82	0	5	11	0.82
46253587--46253622	17	2.2	17	90	5	56	8	5	36	50	1.56
46254232--46254310	41	1.9	40	85	10	106	29	15	22	32	1.95
46254328--46254584	43	6.0	42	82	4	266	22	19	30	27	1.98
46254324--46254581	87	3.0	86	81	5	281	22	18	31	27	1.97
46254342--46254584	85	2.8	86	82	3	285	22	20	30	26	1.98
46255738--46255892	3	51.7	3	94	0	247	33	0	3	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46263639--46263670	3	10.7	3	93	0	55	37	0	0	62	0.95
46267154--46267187	16	2.1	16	88	0	50	41	2	0	55	1.15
46267576--46267624	23	2.1	23	85	7	64	61	2	0	36	1.08
46268646--46268871	43	5.2	43	84	1	254	29	31	16	22	1.95
46269987--46270282	88	3.4	88	100	0	592	30	16	16	36	1.91
46273640--46273697	19	3.1	17	79	18	62	56	0	6	36	1.26
46273952--46274011	10	5.8	10	75	11	50	45	5	0	50	1.23
46273980--46274012	12	2.9	12	86	13	52	42	6	0	51	1.26
46273945--46274017	30	2.4	30	82	8	87	47	4	1	46	1.30
46273946--46274017	20	3.6	19	73	15	65	47	4	1	47	1.30
46274766--46274827	21	2.9	21	75	15	65	38	37	0	24	1.56
46274936--46275030	7	13.3	7	75	8	50	33	44	3	18	1.66
46275629--46275739	41	2.7	41	87	2	143	25	27	25	22	2.00
46275798--46275873	40	1.9	40	88	0	116	18	21	26	34	1.96
46276042--46276088	9	5.2	9	87	7	69	63	2	0	34	1.06
46276059--46276113	9	5.2	11	83	12	55	67	1	0	30	1.01
46281240--46281320	26	3.1	25	85	8	108	55	0	7	37	1.28
46281240--46281320	27	3.1	25	85	8	99	55	0	7	37	1.28
46285555--46285747	26	7.6	25	71	11	117	39	19	21	19	1.92
46285822--46286000	65	2.7	65	84	4	243	38	19	17	24	1.93
46305194--46305401	27	7.8	27	77	2	186	20	15	20	44	1.87
46305194--46305411	54	4.1	54	76	3	210	20	14	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46311902--46312026	63	2.0	62	98	0	232	36	8	19	34	1.83
46312312--46312342	16	1.9	16	100	0	62	25	16	19	38	1.92
46313801--46313892	28	3.3	27	75	6	94	26	21	23	28	1.99
46322741--46322770	12	2.5	12	94	0	51	30	6	16	46	1.73
46338269--46338314	24	1.9	25	86	8	69	32	8	15	43	1.77
46340256--46340467	44	4.8	44	84	1	226	30	19	17	32	1.95
46347359--46347421	25	2.5	25	82	5	74	31	20	28	19	1.97
46347389--46347465	24	3.2	23	77	14	66	38	20	23	16	1.92
46347496--46347551	27	2.1	27	83	9	71	39	12	25	23	1.89
46349574--46349680	40	2.7	39	89	7	153	29	20	26	23	1.99
46349685--46349830	42	3.5	42	81	6	170	22	17	24	35	1.95
46358636--46358689	22	2.4	23	75	3	56	74	3	7	14	1.18
46363942--46363985	21	2.2	20	91	4	70	31	22	15	29	1.95
46363946--46363991	21	2.2	21	84	7	58	36	21	13	28	1.91
46389925--46389964	21	1.9	21	89	0	62	45	35	10	10	1.71
46391539--46391573	17	2.1	17	100	0	70	51	5	25	17	1.67
46398599--46398677	7	11.3	7	79	15	56	35	0	49	15	1.45
46412297--46412641	102	3.4	102	89	2	532	32	27	19	20	1.97
46412546--46412627	27	2.7	30	85	12	107	30	31	21	15	1.95
46416945--46416979	16	2.1	17	89	5	54	37	0	48	14	1.44
46417529--46417587	30	1.9	29	83	10	73	52	6	5	35	1.50
46420596--46420751	78	2.0	78	100	0	312	52	5	6	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46421240--46421272	17	1.9	17	88	11	50	42	0	0	57	0.98
46434358--46434552	68	2.9	67	91	2	309	26	6	4	62	1.38
46436745--46436842	44	2.2	44	96	0	178	31	25	14	28	1.95
46436810--46436900	47	1.9	47	88	4	139	26	23	17	32	1.96
46440911--46441179	68	3.8	68	87	9	380	27	7	4	61	1.40
46440906--46441179	139	1.9	145	91	5	461	27	7	4	61	1.40
46440901--46441179	71	3.9	72	89	7	444	26	7	4	62	1.40
46440907--46441219	139	2.3	139	86	8	383	24	8	4	62	1.42
46443280--46443494	108	2.0	108	99	0	421	33	3	6	55	1.44
46448147--46448208	21	2.9	21	82	2	70	27	22	9	40	1.85
46451286--46451553	43	6.2	43	87	4	330	29	26	18	25	1.98
46451718--46451747	14	2.1	14	93	0	51	50	13	6	30	1.67
46456311--46456361	21	2.4	22	86	6	77	31	43	0	25	1.55
46456378--46456415	14	2.7	15	84	12	53	44	26	0	28	1.54
46456580--46456664	29	2.9	29	78	16	79	42	37	0	20	1.52
46456597--46456650	15	3.7	15	72	20	51	44	40	0	14	1.46
46457066--46457298	41	5.7	40	82	4	252	34	26	21	17	1.96
46457530--46457672	69	2.0	70	82	5	173	30	10	11	46	1.74
46458031--46458124	40	2.4	39	82	8	111	37	25	21	15	1.93
46458308--46459272	114	8.4	114	82	8	1179	35	18	21	25	1.96
46458481--46459171	348	2.0	350	87	3	1008	35	18	20	25	1.95
46461817--46461874	16	3.4	16	82	13	80	36	5	15	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46461826--46461880	16	3.1	18	80	15	78	34	5	16	43	1.71
46461937--46462010	29	2.5	30	72	10	71	60	10	8	20	1.54
46462267--46462339	21	3.3	21	67	23	60	30	5	4	60	1.38
46462288--46462325	14	2.8	13	88	11	58	34	0	0	65	0.93
46463031--46463588	9	64.4	9	64	21	135	44	18	2	35	1.62
46463033--46463298	25	10.6	25	77	7	209	45	19	0	34	1.56
46463220--46463381	41	3.9	41	88	1	198	43	17	3	35	1.65
46463308--46463341	16	2.1	16	88	0	50	41	14	5	38	1.70
46463337--46463392	25	2.2	24	75	9	58	42	10	3	42	1.56
46463353--46463482	25	5.2	25	75	8	84	43	16	3	36	1.63
46463491--46463570	28	3.0	27	82	7	92	47	15	1	36	1.53
46463461--46463575	16	7.3	16	71	20	82	47	19	0	32	1.55
46463472--46463583	25	4.4	25	79	10	118	46	18	0	33	1.56
46468476--46468528	21	2.5	21	84	6	63	30	11	45	13	1.78
46468948--46469079	45	3.0	43	80	8	140	31	19	28	21	1.97
46468910--46469082	44	3.9	42	77	10	150	31	19	26	23	1.98
46472865--46472898	17	2.1	16	88	5	50	23	32	17	26	1.97
46475300--46475360	29	2.1	29	81	0	68	18	32	36	13	1.89
46488790--46489996	44	27.4	44	65	5	373	29	20	23	26	1.99
46488785--46488991	85	2.4	87	78	6	206	28	21	25	25	1.99
46488875--46489218	133	2.6	132	86	2	422	28	21	24	25	1.99
46488960--46489439	221	2.2	221	95	0	852	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46488775--46489572	354	2.3	351	89	2	1190	29	21	23	26	1.99
46489181--46489941	133	5.7	133	98	0	1452	29	20	22	27	1.98
46493674--46493710	18	2.0	19	94	5	67	5	10	13	70	1.32
46495991--46496016	7	3.7	7	100	0	52	88	0	11	0	0.52
46495985--46496021	14	2.6	14	82	0	56	81	5	8	5	0.99
46496940--46496974	14	2.5	14	85	0	52	71	0	14	14	1.15
46498170--46498488	131	2.4	131	93	0	539	30	21	24	23	1.99
46498585--46498697	44	2.7	42	85	9	124	22	21	26	30	1.99
46499831--46499889	20	2.9	21	85	9	79	30	3	3	62	1.28
46499836--46499983	21	6.5	21	70	20	84	33	4	3	58	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161