genome.fa.s22.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  152  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47312973--47313332	152	2.4	153	87	3	528	53	6	9	30	1.59
47312628--47313344	373	1.9	371	91	3	1115	53	7	10	28	1.63
47326000--47326038	17	2.2	17	86	4	51	23	7	17	51	1.71
47340656--47340694	17	2.2	17	86	4	51	23	7	17	51	1.71
47353371--47353527	82	1.9	81	88	1	233	39	4	3	52	1.37
47353472--47353518	24	2.0	24	87	8	69	36	2	0	61	1.08
47353466--47353525	24	2.3	27	72	21	65	40	1	1	56	1.19
47353477--47353530	24	2.3	24	81	12	67	37	1	0	61	1.07
47353504--47353548	18	2.3	20	85	11	67	44	0	2	53	1.13
47353957--47354088	66	2.0	66	92	0	219	21	18	15	44	1.86
47359173--47359203	15	2.1	15	100	0	62	54	0	0	45	0.99
47359172--47359204	11	3.2	11	87	12	52	57	0	0	42	0.98
47371809--47371839	13	2.5	13	94	5	55	61	12	0	25	1.32
47376259--47376321	22	2.7	23	74	11	67	3	17	1	77	0.97
47376270--47376321	18	3.0	16	83	13	59	3	15	1	78	0.98
47383056--47383791	368	2.0	368	94	1	1305	24	22	20	32	1.98
47398300--47398338	15	2.7	15	88	4	53	41	0	38	20	1.53
47411506--47411544	15	2.4	15	87	12	51	66	2	20	10	1.33
47417355--47417407	23	2.4	22	76	20	56	9	18	1	69	1.25
47430298--47430376	31	2.6	32	80	6	92	48	3	7	40	1.50
47434261--47434460	107	1.9	101	83	6	256	28	24	16	32	1.96
47434351--47434460	33	3.3	33	77	7	87	26	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47439678--47439746	21	3.2	21	70	11	68	28	40	4	26	1.75
47439680--47439752	22	3.4	22	67	17	62	30	41	4	24	1.74
47439665--47439752	43	2.0	43	97	0	167	32	37	4	25	1.76
47444008--47444081	37	2.0	37	97	0	139	25	41	2	29	1.69
47454724--47454773	14	3.4	14	83	5	55	52	0	2	46	1.12
47454734--47454763	7	4.3	7	95	0	51	50	0	0	50	1.00
47459549--47459623	35	2.2	35	95	2	134	40	0	17	42	1.49
47462520--47462689	41	4.2	39	81	11	170	35	20	18	25	1.95
47462532--47462695	79	2.0	82	82	10	205	37	19	18	24	1.94
47463255--47463305	14	3.6	14	75	15	59	41	33	3	21	1.72
47464525--47464576	19	2.7	20	84	6	70	26	38	1	32	1.68
47467237--47467370	64	2.1	64	97	0	250	38	11	4	45	1.61
47467418--47467488	24	3.0	24	87	0	106	28	19	8	43	1.80
47467662--47467735	29	2.6	29	88	0	112	44	1	2	51	1.24
47467692--47467746	15	3.7	15	79	20	71	45	0	0	54	0.99
47467857--47468146	9	32.7	9	82	4	302	47	14	2	35	1.57
47467858--47468146	44	6.5	44	87	2	181	47	14	2	35	1.57
47467857--47468146	124	2.3	124	94	1	492	47	14	2	35	1.57
47470015--47470039	12	2.1	12	100	0	50	32	8	28	32	1.86
47473256--47473407	40	3.8	40	97	0	286	24	29	21	25	1.99
47477082--47477110	14	2.1	14	93	6	51	34	0	6	58	1.25
47477537--47477621	21	4.0	21	83	11	111	29	20	49	1	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47479912--47479964	16	3.5	15	78	14	56	56	7	1	33	1.38
47479928--47479989	29	2.2	28	83	13	74	58	6	1	33	1.34
47479973--47480013	3	13.7	3	94	0	73	63	0	2	34	1.08
47480116--47480154	3	12.7	3	89	5	60	61	0	2	35	1.10
47479827--47480463	141	4.2	141	82	11	654	59	5	4	30	1.40
47480205--47480256	16	3.2	16	78	8	52	55	5	1	36	1.35
47480245--47480301	23	2.5	21	83	11	60	64	3	1	29	1.20
47480388--47480428	21	1.9	22	85	14	59	58	9	0	31	1.31
47480417--47480472	3	18.7	3	78	7	60	58	0	5	35	1.21
47480417--47480494	27	3.1	24	79	16	79	60	0	6	33	1.22
47481937--47482201	133	2.0	134	84	5	349	36	16	15	30	1.90
47482068--47482430	77	4.8	77	80	5	402	33	19	16	29	1.94
47482068--47482423	152	2.3	150	83	4	464	32	20	16	30	1.95
47496198--47496250	16	3.5	15	78	14	56	56	7	1	33	1.38
47496214--47496296	27	3.0	28	81	13	75	60	4	1	33	1.26
47496259--47496296	3	12.7	3	100	0	76	65	0	0	34	0.93
47496113--47496826	144	4.8	145	85	7	888	60	5	3	29	1.38
47496698--47496727	3	9.7	3	92	7	51	63	0	0	36	0.95
47496658--47496718	26	2.3	27	81	16	74	60	6	0	32	1.22
47497425--47497505	39	2.1	39	97	0	153	23	16	4	55	1.60
47502649--47502712	18	3.6	18	91	0	101	21	20	14	43	1.87
47509503--47509531	14	2.1	14	100	0	58	51	20	13	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47513911--47513954	22	2.0	22	91	8	72	40	0	18	40	1.50
47514021--47514097	8	10.0	8	72	16	56	18	0	31	50	1.47
47514025--47514094	7	9.3	7	74	11	59	18	0	31	50	1.48
47514025--47514099	14	5.0	14	76	12	69	20	0	30	49	1.49
47514082--47514125	22	2.0	23	95	4	81	29	0	27	43	1.55
47513859--47514376	175	2.9	173	90	4	761	33	1	19	44	1.60
47514185--47514299	47	2.5	44	72	14	99	27	1	24	46	1.63
47514378--47514638	126	2.1	125	89	3	391	38	17	16	27	1.91
47515470--47515731	46	5.7	46	90	4	350	22	23	15	38	1.92
47515584--47515705	25	5.2	25	67	28	97	22	22	17	36	1.94
47517863--47517915	11	4.7	11	75	13	54	64	3	0	32	1.12
47517863--47517928	34	2.0	33	82	8	82	59	4	0	36	1.18
47521790--47521834	24	2.0	23	86	8	65	17	22	33	26	1.96
47522067--47522131	30	2.2	30	85	0	85	13	15	41	29	1.86
47523201--47523228	13	2.2	13	100	0	56	64	0	0	35	0.94
47527594--47527641	19	2.6	19	96	3	89	37	0	12	50	1.41
47527649--47527730	39	2.1	39	88	4	121	34	1	12	52	1.47
47527717--47527930	104	2.1	105	89	2	333	34	8	9	47	1.66
47537064--47537227	39	4.2	39	89	0	238	21	24	20	33	1.97
47537027--47537227	78	2.6	78	85	3	246	22	24	19	32	1.97
47546137--47546163	14	1.9	14	100	0	54	22	18	7	51	1.70
47548507--47548575	31	2.3	31	92	2	113	42	14	10	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47556293--47556333	15	2.6	15	84	7	55	41	17	2	39	1.62
47556342--47556408	23	2.9	24	70	17	68	49	19	2	28	1.63
47556328--47556401	22	3.3	22	71	14	69	48	21	2	27	1.63
47564454--47564498	22	2.0	22	86	0	63	28	8	20	42	1.82
47565869--47566053	40	4.7	40	79	6	198	24	27	23	24	2.00
47565869--47566053	79	2.3	82	80	7	202	24	27	23	24	2.00
47569716--47569769	28	2.0	28	85	3	74	42	7	1	48	1.42
47575944--47575973	16	1.9	15	93	6	51	33	6	6	53	1.53
47577073--47577112	14	2.9	14	84	0	53	32	7	17	42	1.77
47577096--47577135	20	2.0	20	90	0	62	27	10	12	50	1.72
47577081--47577147	34	1.9	35	87	3	100	32	8	11	46	1.72
47580344--47580413	36	1.9	36	94	0	122	28	21	20	30	1.98
47583374--47583403	12	2.4	13	94	5	53	66	6	6	20	1.38
47588494--47588533	19	2.1	19	86	9	55	37	10	15	37	1.80
47592265--47592318	20	2.7	20	82	0	63	24	20	18	37	1.94
47592265--47592338	30	2.5	30	86	8	98	21	20	18	39	1.93
47592265--47592329	20	3.2	20	71	16	53	23	21	16	38	1.93
47604044--47604098	27	2.0	27	96	0	101	27	12	21	38	1.90
47605049--47605345	50	5.8	50	83	2	299	28	20	28	22	1.99
47622715--47622763	26	1.9	25	95	4	89	18	38	6	36	1.76
47623476--47623531	29	2.0	28	85	3	76	51	10	7	30	1.63
47636610--47636698	45	2.0	45	95	0	160	28	28	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47641643--47641797	9	16.8	9	70	15	63	31	5	2	60	1.34
47642522--47642589	31	2.2	31	87	7	95	41	22	13	23	1.89
47651060--47651088	14	2.1	14	100	0	58	17	34	13	34	1.89
47654387--47654415	14	2.1	14	100	0	58	17	34	13	34	1.89
47658900--47658947	10	4.6	10	82	10	51	64	2	0	33	1.05
47664609--47664735	39	3.3	39	87	0	173	44	18	4	33	1.70
47671468--47671555	27	3.3	27	79	9	108	30	21	18	29	1.97
47672869--47672904	14	2.6	14	86	0	54	30	38	11	19	1.86
47675083--47675163	31	2.6	31	84	9	112	30	6	13	49	1.67
47675294--47675370	31	2.5	31	85	2	102	46	12	5	35	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161