genome.fa.s22.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  37  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11270957--11271089	40	3.4	39	78	6	108	28	21	17	32	1.96
11271791--11271888	29	3.4	28	81	5	81	27	23	29	19	1.98
11273392--11273491	50	2.0	50	98	0	191	29	18	15	38	1.90
11277778--11278074	50	5.8	50	81	3	283	27	20	27	23	1.99
11279728--11280024	50	5.8	50	81	3	283	27	20	27	23	1.99
11282903--11283238	51	6.6	50	80	5	356	28	25	16	29	1.96
11282903--11283238	102	3.3	102	91	1	498	28	25	16	29	1.96
11283198--11283335	69	2.0	69	98	0	267	29	27	11	31	1.92
11293888--11293925	11	3.5	11	85	10	51	28	2	0	68	1.03
11300405--11300453	25	2.0	24	96	4	89	24	18	4	53	1.62
11310671--11310699	15	1.9	15	100	0	58	34	6	13	44	1.71
11313567--11313834	134	2.0	134	100	0	536	30	11	25	32	1.92
11320319--11320354	17	2.1	17	100	0	72	5	36	5	52	1.48
11320592--11320635	17	2.8	16	93	6	72	6	0	15	77	0.97
11324108--11324143	2	18.0	2	100	0	72	50	50	0	0	1.00
11340586--11340675	41	2.2	42	80	6	112	66	11	2	20	1.33
11340830--11340912	11	7.5	10	74	17	67	62	30	2	4	1.28
11340827--11340896	21	3.1	21	87	8	86	60	32	2	4	1.31
11340830--11340912	23	3.8	21	82	7	94	62	30	2	4	1.28
11352664--11352726	22	2.8	22	90	4	90	49	3	0	47	1.17
11352699--11352755	16	3.6	16	85	0	78	47	5	3	43	1.43
11352870--11352968	40	2.6	36	79	10	110	39	3	9	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11352914--11352980	16	4.5	16	67	17	54	37	1	10	50	1.46
11353022--11353068	22	2.1	22	84	7	60	57	4	2	36	1.30
11353805--11353850	21	2.1	22	84	11	60	32	0	19	47	1.50
11356794--11356911	40	3.0	40	85	2	150	41	28	16	12	1.86
11356812--11356932	40	3.1	39	85	2	143	40	26	17	15	1.89
11357854--11357901	21	2.4	19	82	10	60	22	10	0	66	1.22
11358695--11358732	20	1.9	20	94	0	67	10	26	26	36	1.89
11379347--11379672	123	2.7	123	96	0	589	30	15	19	33	1.94
11382205--11382388	61	3.1	61	62	27	151	43	5	10	39	1.64
11382214--11382398	55	3.3	55	63	19	144	44	5	9	39	1.62
11382107--11382440	116	2.9	116	96	0	623	43	8	9	39	1.67
11382442--11382481	22	1.9	20	90	10	62	17	0	35	47	1.48
11382466--11383069	52	11.1	52	79	13	621	28	0	24	46	1.57
11382437--11383003	132	4.2	132	77	14	604	28	0	24	46	1.57
11382574--11382619	22	2.2	20	85	11	58	30	0	23	45	1.53
11382552--11383004	80	5.6	79	74	16	385	28	0	24	46	1.56
11382466--11383041	29	21.0	29	73	20	378	28	0	24	46	1.56
11382712--11382790	23	2.9	29	76	21	107	30	1	21	46	1.59
11382741--11382802	23	2.8	21	92	5	79	29	1	19	50	1.57
11382847--11382892	22	2.2	20	88	11	67	26	0	28	45	1.54
11382905--11382946	23	1.9	21	95	5	66	30	2	16	50	1.58
11383069--11383180	25	4.7	25	69	20	105	42	14	0	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11383069--11383223	69	2.3	69	92	5	253	43	13	1	41	1.52
11383158--11383241	43	2.0	42	88	6	125	46	11	1	40	1.48
11385827--11385997	46	3.6	46	88	9	270	34	14	22	28	1.94
11385879--11385997	52	2.2	52	92	2	193	36	14	23	26	1.93
11385960--11386069	37	3.0	37	89	2	170	35	15	23	25	1.94
11387011--11387151	72	2.0	72	88	2	212	24	24	21	29	1.99
11387237--11387261	7	3.6	7	100	0	50	60	12	0	28	1.32
11387334--11387859	265	2.0	263	92	3	878	31	18	21	29	1.96
11388710--11388762	22	2.4	22	96	3	97	41	0	32	26	1.56
11388723--11388779	10	5.2	11	74	21	57	43	0	35	21	1.52
11390645--11390720	26	2.9	26	80	0	89	40	10	15	32	1.82
11392830--11392892	25	2.6	24	75	5	63	20	26	17	34	1.95
11392985--11393075	25	3.5	24	74	22	78	21	24	21	31	1.98
11392999--11393069	27	2.8	26	83	12	85	19	26	21	32	1.97
11399270--11399502	122	1.9	121	79	2	261	39	12	14	33	1.84
11400435--11400658	122	1.8	122	79	9	260	32	23	14	29	1.94
11409646--11409886	108	2.3	107	81	9	269	38	11	7	42	1.69
11412843--11412928	42	2.1	41	93	2	145	40	19	18	20	1.91
11416902--11416955	21	2.6	21	82	5	65	9	11	38	40	1.73
11417615--11417677	28	2.3	28	86	2	83	53	17	6	22	1.65
11419387--11419432	15	3.1	15	80	0	56	36	34	8	19	1.83
11419880--11419922	12	3.6	12	87	0	50	55	25	0	18	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11419886--11419953	6	11.3	6	82	0	55	55	16	5	22	1.62
11419969--11420029	12	5.1	12	75	0	59	54	11	11	22	1.68
11419972--11420035	18	3.6	17	79	8	65	54	9	12	23	1.66
11421790--11421853	31	2.1	31	96	0	119	42	3	25	29	1.70
11423492--11423526	15	2.4	15	90	4	54	48	0	8	42	1.33
11424379--11424403	8	3.1	8	100	0	50	12	0	0	88	0.53
11427473--11427558	7	11.9	7	78	17	63	20	4	0	74	1.00
11427473--11427559	4	21.8	4	73	23	51	20	4	0	74	0.99
11427504--11427559	25	2.3	24	87	9	78	23	3	0	73	0.99
11430424--11430483	27	2.2	27	85	5	86	31	15	21	31	1.94
11440831--11440876	23	2.0	22	84	16	58	39	21	0	39	1.54
11440975--11441095	23	5.3	23	89	4	190	35	25	20	18	1.95
11446717--11446753	18	2.1	18	100	0	74	37	16	18	27	1.92
11447076--11447151	19	3.9	19	75	10	82	26	21	21	31	1.98
11449688--11449737	17	2.9	17	96	0	91	44	6	26	24	1.76
11455348--11455418	30	2.4	30	80	0	79	33	7	12	46	1.69
11455563--11455643	29	2.7	29	80	5	81	48	11	6	34	1.64
11463747--11463781	3	11.7	3	100	0	70	0	31	0	68	0.90
11469543--11469577	15	2.3	15	100	0	70	22	20	5	51	1.68
11470582--11470641	24	2.5	24	86	5	86	21	11	40	26	1.88
11481379--11482191	410	2.0	408	95	1	1461	31	11	17	39	1.85
11488144--11488260	19	5.8	20	66	20	64	58	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11488145--11488197	20	2.7	19	85	11	63	58	3	0	37	1.16
11489101--11489127	7	3.9	7	100	0	54	44	0	25	29	1.54
11491406--11491555	41	3.6	41	95	0	255	27	20	28	24	1.99
11506375--11506405	7	4.6	7	92	8	55	58	0	0	41	0.98
11514369--11514609	123	2.0	123	100	0	482	30	23	15	31	1.95
11514591--11514741	66	2.3	66	100	0	302	25	31	8	34	1.86
11520409--11520450	19	2.1	20	82	8	50	45	11	14	28	1.80
11520997--11521048	26	2.2	23	83	13	61	63	1	5	28	1.28
11528936--11528984	20	2.5	20	80	9	57	59	0	2	38	1.09
11529052--11529092	20	2.2	20	86	8	59	68	2	4	24	1.22
11533926--11533962	19	1.9	19	94	0	65	13	18	10	56	1.66
11534909--11534966	3	19.3	3	74	0	53	62	5	1	31	1.27
11538806--11538942	21	6.5	21	70	3	96	42	16	23	18	1.89
11538806--11538956	42	3.6	42	81	5	144	41	16	25	17	1.89
11540916--11540956	20	2.0	21	86	9	59	43	17	4	34	1.70
11547223--11547506	144	2.0	144	95	0	505	38	9	17	35	1.81
11549230--11549384	77	2.0	77	97	0	292	25	18	13	42	1.87
11550859--11550912	19	2.8	19	94	0	99	37	9	16	37	1.81
11550859--11550935	38	1.9	40	87	10	113	36	7	16	38	1.78
11551121--11551165	23	2.0	23	81	0	54	22	0	15	62	1.33
11551384--11551423	6	6.7	6	91	0	62	22	0	0	77	0.77
11551939--11551988	13	4.2	12	78	12	50	18	2	8	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11561472--11561518	24	1.9	25	86	4	69	61	4	0	34	1.15
11570603--11570627	8	3.1	8	100	0	50	36	0	12	52	1.39
11576239--11576352	55	2.1	55	93	1	194	34	12	16	36	1.86
11576829--11576869	21	2.0	20	90	0	55	19	14	9	53	1.68
11577644--11577679	16	2.2	17	90	5	56	66	5	2	25	1.27
11579401--11579445	19	2.2	20	84	7	56	26	2	0	71	0.98
11587357--11587389	17	1.9	17	88	11	50	60	0	0	39	0.97
11589398--11589439	22	1.9	22	90	9	68	61	4	0	33	1.17
11589527--11589555	11	2.6	11	100	0	58	68	6	6	17	1.34
11589966--11590055	9	9.4	9	76	8	72	33	1	3	62	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161