genome.fa.s22.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  144  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44843132--44843222	41	2.2	41	88	3	130	23	17	28	30	1.97
44851665--44851751	37	2.3	39	84	11	110	33	4	10	51	1.56
44851587--44851751	76	2.2	77	81	7	194	32	5	12	49	1.63
44854456--44854724	46	5.6	48	82	10	302	35	14	21	27	1.93
44854456--44854724	98	2.7	98	94	0	457	35	14	21	27	1.93
44854688--44854796	37	3.0	37	90	2	177	35	16	22	24	1.95
44855119--44855147	12	2.4	12	100	0	58	41	0	10	48	1.37
44857589--44857840	124	2.0	124	96	0	459	33	11	14	40	1.82
44861134--44861164	16	1.9	16	100	0	62	58	16	25	0	1.38
44861134--44861171	16	2.5	15	87	8	51	57	15	26	0	1.38
44873548--44873598	24	2.1	24	82	7	59	19	5	5	68	1.31
44873626--44873669	22	2.0	21	83	12	54	38	0	0	61	0.96
44874115--44874144	14	2.1	14	93	0	51	50	10	30	10	1.69
44898612--44898691	40	2.0	40	100	0	160	32	20	17	30	1.95
44914619--44914651	13	2.4	14	85	10	50	45	0	0	54	0.99
44915262--44915316	21	2.6	21	80	8	58	32	3	0	63	1.12
44915270--44915315	22	2.1	21	84	4	56	32	4	0	63	1.14
44916985--44917018	17	2.0	17	88	11	52	70	5	8	14	1.31
44919083--44919107	7	3.6	7	100	0	50	60	12	0	28	1.32
44927736--44927947	52	4.3	47	84	5	192	30	28	15	25	1.96
44927750--44927931	52	3.6	51	84	6	230	28	29	17	24	1.97
44933875--44934034	41	3.9	41	94	0	275	26	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44935603--44935628	13	2.0	13	100	0	52	53	0	0	46	1.00
44942019--44942193	85	2.1	85	95	0	314	30	14	21	32	1.94
44943747--44943788	22	1.9	22	85	0	57	30	2	0	66	1.04
44951394--44951433	5	8.0	5	97	0	62	5	0	35	60	1.19
44956630--44956660	16	1.9	16	93	0	53	19	32	6	41	1.77
44965929--44965963	4	8.8	4	100	0	70	51	22	0	25	1.48
44980079--44980139	21	3.0	21	80	4	63	21	21	14	42	1.88
44985251--44985300	24	2.1	24	84	0	64	52	4	4	40	1.39
44985807--44985847	21	2.0	21	85	0	55	60	2	0	36	1.10
44988507--44988531	13	1.9	13	100	0	50	40	0	0	60	0.97
44988577--44988645	20	3.5	20	76	7	70	69	4	23	2	1.20
44995230--44995254	13	1.9	13	100	0	50	40	0	0	60	0.97
44995755--44995889	40	3.4	39	76	7	130	25	17	25	31	1.97
44997357--44997407	24	2.3	23	83	10	61	29	13	23	33	1.93
44997514--44997627	34	3.4	34	81	1	149	42	14	12	30	1.82
45009818--45009852	2	18.0	2	94	5	63	48	0	51	0	1.00
45009993--45010021	2	14.5	2	100	0	58	0	48	0	51	1.00
45014374--45014406	7	4.7	7	100	0	66	69	0	0	30	0.88
45025356--45025398	22	2.0	22	86	9	61	58	4	6	30	1.45
45026794--45026866	10	7.7	9	75	15	67	31	1	4	63	1.22
45026795--45026867	29	2.5	29	84	4	94	32	1	4	61	1.23
45028757--45028789	15	2.2	15	94	0	57	63	12	0	24	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45036016--45036058	22	2.0	22	81	9	52	37	2	6	53	1.41
45037826--45037877	26	2.0	26	88	3	79	38	23	3	34	1.73
45042915--45042957	15	2.8	16	82	10	63	0	18	4	76	0.95
45051059--45051116	29	2.0	29	86	6	82	51	10	3	34	1.53
45052232--45052287	29	1.9	29	92	0	94	55	8	0	35	1.31
45052532--45052578	23	2.0	23	91	0	76	38	6	10	44	1.65
45053022--45053046	7	3.6	7	100	0	50	12	0	0	88	0.53
45056392--45056487	25	3.8	25	80	0	93	18	28	20	32	1.97
45058878--45058903	12	2.2	12	100	0	52	42	7	23	26	1.81
45062192--45062228	18	2.1	18	89	0	56	37	10	21	29	1.88
45067451--45067485	16	2.1	16	89	5	52	37	2	0	60	1.12
45075928--45075987	30	2.0	30	90	0	93	30	0	13	56	1.37
45076109--45076138	11	2.7	11	100	0	60	63	0	0	36	0.95
45083142--45083219	41	1.9	41	84	5	104	21	20	25	32	1.98
45084617--45084693	41	1.9	41	83	2	102	29	16	23	29	1.96
45084622--45084874	114	2.2	114	78	7	255	25	22	25	26	2.00
45085724--45085771	24	2.0	24	95	0	87	52	4	12	31	1.58
45085997--45086059	31	2.0	31	96	0	117	33	23	14	28	1.94
45086283--45086746	146	3.2	145	78	7	397	26	14	21	37	1.92
45086370--45086746	145	2.6	146	79	6	372	27	15	21	35	1.93
45089170--45089221	13	4.0	13	82	5	61	44	7	1	46	1.43
45089193--45089311	63	1.9	63	96	0	220	42	8	6	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45089303--45089423	39	3.1	38	83	8	102	42	12	0	45	1.42
45089331--45089423	38	2.4	39	94	1	161	43	12	0	44	1.43
45089404--45089868	9	51.6	9	73	16	333	44	19	1	34	1.59
45089514--45089596	12	6.6	12	70	24	55	45	21	2	30	1.65
45089425--45089638	64	3.3	64	85	9	244	45	20	1	32	1.60
45089622--45089688	28	2.4	28	92	0	107	47	16	2	32	1.62
45092297--45092365	21	3.3	21	89	0	102	34	20	43	1	1.61
45092815--45093106	42	6.9	40	83	7	221	26	22	20	30	1.99
45092815--45093107	85	3.5	84	83	3	340	25	22	20	30	1.99
45106576--45106621	13	3.5	13	78	21	51	36	0	4	58	1.18
45110026--45110359	18	18.6	17	67	19	135	45	10	11	33	1.74
45109996--45110117	54	2.3	53	80	12	142	44	13	9	31	1.77
45110087--45110117	16	1.9	16	93	0	53	48	12	12	25	1.77
45110098--45110152	21	2.6	23	80	16	73	32	12	14	40	1.84
45110028--45110133	38	2.9	37	82	12	107	46	12	9	32	1.73
45110067--45110175	58	1.9	57	83	9	141	43	11	9	35	1.74
45110067--45110146	20	4.1	20	71	19	69	41	11	10	37	1.74
45110026--45110344	36	8.8	36	74	12	176	44	10	11	33	1.75
45110168--45110305	54	2.6	52	83	10	154	46	9	13	30	1.75
45110389--45110430	18	2.3	18	83	0	57	35	11	9	42	1.74
45110606--45110647	20	2.2	20	87	12	61	38	11	9	40	1.75
45110966--45111009	12	3.8	12	84	6	63	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45110962--45111032	18	3.8	18	71	22	56	0	23	0	76	0.79
45110965--45111009	23	1.9	24	90	4	74	0	22	0	77	0.76
45110985--45111029	16	2.9	14	79	20	54	0	24	0	75	0.80
45111286--45111352	7	9.0	7	81	15	64	0	19	0	80	0.71
45111286--45111348	14	4.3	14	79	16	74	0	19	0	80	0.70
45111286--45111352	18	3.8	17	80	11	73	0	19	0	80	0.71
45111288--45111353	11	6.3	10	76	10	69	0	21	0	78	0.75
45111441--45111493	5	11.2	5	80	11	67	0	20	1	77	0.87
45111443--45111503	9	7.4	8	75	12	52	1	16	1	80	0.88
45111441--45111501	14	4.5	13	84	10	77	1	18	1	78	0.91
45111452--45111493	19	2.2	19	95	0	75	0	19	2	78	0.86
45111853--45112006	59	2.6	60	83	6	188	44	2	18	33	1.64
45111853--45111996	30	4.8	30	81	6	159	43	2	18	34	1.65
45111839--45112007	30	5.7	29	78	12	155	43	2	20	33	1.67
45112570--45112607	18	2.1	19	90	5	60	44	7	5	42	1.56
45131037--45131076	15	2.5	17	84	8	57	62	0	2	35	1.09
45132705--45132788	42	2.0	42	90	0	132	34	4	4	55	1.42
45133963--45134004	22	1.9	22	85	9	59	47	2	0	50	1.14
45138261--45138304	19	2.4	18	92	7	79	45	13	2	38	1.56
45139883--45139937	9	5.6	9	78	19	56	58	0	0	41	0.98
45139882--45139926	23	1.9	24	90	4	74	60	0	0	40	0.97
45140907--45140987	40	2.0	40	97	0	153	34	20	13	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45141534--45141570	10	3.6	10	96	3	65	43	0	0	56	0.99
45141534--45141579	21	2.2	21	88	7	67	45	0	0	54	0.99
45141521--45141621	36	2.8	35	74	14	107	48	2	1	46	1.28
45141599--45141650	20	2.8	18	78	21	63	51	3	1	42	1.31
45141522--45141691	72	2.4	71	84	10	210	50	2	2	43	1.32
45142904--45143267	182	2.0	182	100	0	728	33	20	14	31	1.92
45146326--45146414	42	2.0	44	87	6	128	41	15	13	29	1.85
45148564--45148588	13	1.9	13	100	0	50	32	4	24	40	1.73
45151999--45152056	27	2.1	27	90	0	89	34	29	15	20	1.94
45155670--45155695	8	3.2	8	100	0	52	11	0	0	88	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161