genome.fa.s22.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  108  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34388288--34388319	16	2.0	16	93	0	55	59	0	15	25	1.36
34390061--34390093	12	2.8	12	86	13	50	72	9	12	6	1.26
34391454--34391589	68	2.0	68	92	0	227	30	12	12	44	1.79
34409165--34409264	42	2.4	42	84	3	130	26	27	20	27	1.99
34411534--34411577	19	2.4	18	85	11	54	27	6	15	50	1.70
34412572--34412624	3	17.7	3	76	7	54	5	28	3	62	1.35
34412971--34413140	84	2.0	86	82	4	211	28	16	14	40	1.88
34415473--34415530	19	3.0	19	70	22	57	56	3	20	18	1.56
34415472--34415538	20	3.4	20	73	19	68	56	4	20	17	1.58
34421047--34421083	7	5.3	7	86	0	56	54	0	13	32	1.40
34421040--34421083	14	3.1	14	86	0	61	50	0	18	31	1.47
34421867--34421892	5	5.2	5	100	0	52	76	0	0	23	0.78
34440777--34440811	18	2.0	17	88	5	52	45	0	0	54	0.99
34440897--34440931	18	2.0	17	88	5	52	45	0	0	54	0.99
34440744--34441068	120	2.7	120	98	0	623	44	2	5	48	1.38
34441017--34441051	18	2.0	17	88	5	52	45	0	0	54	0.99
34441216--34441306	45	2.0	45	85	2	121	37	28	6	27	1.82
34441287--34441339	16	3.2	16	94	5	97	37	37	0	24	1.56
34442618--34442660	19	2.3	19	92	4	70	62	0	2	34	1.08
34442779--34442805	9	3.0	9	100	0	54	77	0	0	22	0.76
34443278--34443398	9	13.2	9	69	11	50	35	1	3	59	1.24
34443327--34443372	19	2.4	18	82	7	56	39	4	2	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34443290--34443360	29	2.5	28	78	13	74	35	1	4	59	1.26
34443389--34443415	11	2.5	11	100	0	54	40	0	0	59	0.98
34444362--34444433	17	4.2	17	72	11	58	38	11	2	47	1.54
34448875--34449106	86	2.7	86	80	7	274	28	30	18	23	1.97
34448838--34449106	43	6.2	43	77	7	224	27	30	18	23	1.98
34449413--34449525	21	5.4	21	85	0	118	4	41	17	36	1.70
34449501--34449642	66	2.2	66	88	5	207	12	28	19	40	1.88
34449501--34449665	66	2.5	66	86	3	199	12	27	19	40	1.88
34450684--34450727	16	2.8	16	85	0	61	36	0	15	47	1.46
34450695--34450767	25	2.7	25	81	10	74	34	2	16	46	1.61
34450752--34450966	9	25.7	9	66	18	72	40	1	16	42	1.57
34450754--34450884	16	7.8	16	72	13	70	37	1	18	42	1.60
34450823--34450944	34	3.4	33	70	22	102	44	1	13	40	1.54
34450780--34450994	75	2.8	75	86	9	256	41	1	14	42	1.54
34453841--34453939	7	13.0	8	67	19	52	34	47	1	17	1.54
34455242--34455279	15	2.5	15	86	0	58	36	42	0	21	1.53
34455751--34456070	41	7.8	40	83	5	338	33	25	24	16	1.95
34456128--34456243	40	2.9	40	77	10	121	19	25	21	33	1.97
34471594--34471639	23	2.0	24	95	4	85	26	21	10	41	1.86
34475095--34475125	16	1.9	16	100	0	62	64	6	22	6	1.40
34477201--34477240	14	2.9	14	84	0	53	32	7	17	42	1.77
34476924--34477434	252	2.0	252	96	0	941	31	7	13	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34484682--34484716	18	2.0	17	88	5	52	45	0	0	54	0.99
34484874--34484965	45	2.1	45	87	2	132	31	27	5	35	1.79
34485328--34485522	98	2.0	98	94	0	345	30	10	22	37	1.87
34487202--34487248	24	2.0	24	95	0	85	36	8	6	48	1.59
34488207--34488250	18	2.4	18	88	0	61	36	0	59	4	1.18
34488223--34488258	18	2.0	18	88	0	54	44	0	55	0	0.99
34493525--34493584	30	2.0	30	90	0	93	31	6	18	43	1.76
34500327--34500352	13	2.0	13	100	0	52	15	30	0	53	1.42
34500554--34500725	88	2.0	88	96	0	317	41	19	16	22	1.90
34501052--34501116	23	2.7	23	90	7	94	40	20	38	1	1.62
34501081--34501163	30	2.7	30	76	10	87	42	15	39	2	1.60
34504599--34504695	26	3.7	26	80	5	115	23	17	25	32	1.96
34509699--34509810	23	4.8	23	77	13	86	24	25	17	32	1.97
34509731--34509783	22	2.3	23	83	3	63	22	24	20	32	1.98
34517364--34518052	342	2.0	342	95	0	1254	34	15	11	38	1.84
34524946--34525247	27	11.2	27	86	0	352	18	16	22	42	1.89
34528835--34528863	6	4.8	6	100	0	58	17	0	0	82	0.66
34538582--34538618	11	3.4	11	85	14	58	27	54	2	16	1.56
34539650--34539697	24	2.0	24	87	0	69	22	16	27	33	1.96
34539713--34539784	24	3.0	24	87	0	99	25	18	23	33	1.97
34539650--34539820	87	2.0	87	90	0	270	22	18	26	32	1.97
34545818--34545855	19	2.0	20	89	5	60	7	15	15	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34559426--34559603	27	6.6	27	83	3	205	26	15	28	29	1.96
34559427--34559582	82	1.9	81	88	3	233	26	15	28	29	1.96
34559423--34559603	82	2.2	81	83	2	229	27	15	27	29	1.96
34567489--34567666	27	6.6	27	83	3	205	26	15	28	29	1.96
34567490--34567645	82	1.9	81	88	3	233	26	15	28	29	1.96
34567486--34567666	82	2.2	81	83	2	229	27	15	27	29	1.96
34578020--34578063	16	2.8	15	80	10	52	47	25	0	27	1.52
34579246--34579291	24	2.0	23	86	4	65	71	15	2	10	1.23
34579637--34579683	22	2.1	22	84	7	60	19	2	4	74	1.09
34580613--34580672	9	7.0	8	78	21	52	28	1	1	68	1.09
34584008--34584491	241	2.0	241	97	0	923	39	13	24	22	1.90
34584619--34584647	14	2.1	14	93	6	51	34	6	10	48	1.64
34588332--34588357	12	2.2	12	100	0	52	7	15	0	76	0.99
34592285--34592338	26	2.1	26	92	0	90	12	12	16	57	1.65
34593221--34593697	44	10.9	44	78	8	314	31	20	21	26	1.98
34593229--34593683	89	5.2	87	77	8	311	31	21	21	26	1.98
34593318--34593817	217	2.3	216	85	3	673	31	20	21	26	1.98
34594447--34594480	4	8.5	4	87	12	52	23	0	0	76	0.79
34595402--34595439	3	13.0	3	94	5	69	31	0	0	68	0.90
34595402--34595473	9	8.4	8	82	17	67	29	1	1	68	1.07
34597235--34597276	22	1.9	22	85	9	59	45	16	7	30	1.74
34598075--34598218	73	2.0	74	92	1	245	50	17	6	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34599424--34599618	41	4.8	41	79	2	196	34	14	28	22	1.93
34599430--34599618	82	2.3	82	88	1	272	33	14	29	22	1.94
34606896--34606954	24	2.4	23	78	18	66	37	1	1	59	1.18
34609826--34609874	22	2.3	22	82	3	64	36	2	4	57	1.30
34610711--34610747	20	1.9	18	89	10	56	35	2	8	54	1.44
34613042--34613110	31	2.1	33	82	12	81	27	27	24	20	1.99
34613073--34613130	28	2.1	27	87	3	80	31	25	22	20	1.98
34613423--34613505	27	3.0	27	79	8	96	24	12	20	43	1.85
34615569--34615607	20	2.0	20	85	10	53	23	15	5	56	1.59
34618308--34618342	15	2.3	15	100	0	70	51	11	14	22	1.74
34620097--34620253	43	3.6	44	79	9	189	24	14	26	33	1.94
34629232--34629263	16	2.0	17	88	11	50	0	25	3	71	1.00
34646597--34646679	9	9.2	9	80	5	96	40	20	9	28	1.84
34646604--34646679	27	2.8	27	89	0	116	40	19	10	28	1.85
34651755--34651792	18	2.1	18	100	0	76	10	0	39	50	1.37
34654404--34654650	27	9.1	27	81	6	295	41	20	21	17	1.90
34654781--34654863	26	3.1	27	84	6	98	19	21	21	37	1.94
34662896--34663158	40	6.6	40	88	3	325	24	20	27	26	1.99
34662935--34663193	80	3.3	80	85	3	256	25	20	27	25	1.99
34670848--34671110	40	6.6	40	88	3	325	24	20	27	26	1.99
34670887--34671145	80	3.3	80	85	3	256	25	20	27	25	1.99
34673329--34673429	37	2.6	40	85	7	145	25	17	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34673329--34673585	43	6.2	40	77	9	214	25	19	19	35	1.95
34676623--34676673	21	2.5	21	83	3	59	9	25	7	56	1.58
34676683--34676996	157	2.0	157	98	0	601	32	16	15	35	1.91
34701424--34701556	43	3.1	43	78	2	151	19	15	16	48	1.82
34708793--34708870	24	3.2	24	66	20	72	16	38	5	39	1.71
34711100--34711174	33	2.3	32	86	6	107	20	36	25	18	1.95
34715149--34715192	23	1.9	23	81	9	54	27	13	4	54	1.58
34718798--34718845	22	2.3	22	85	7	64	60	8	2	29	1.37
34726474--34726504	15	2.0	16	93	6	55	51	0	3	45	1.17
34728979--34729118	50	2.8	50	83	1	183	27	22	29	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161