genome.fa.s22.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  156  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48633376--48633551	46	3.8	45	78	10	194	21	21	28	27	1.99
48633373--48633543	93	1.8	93	92	0	288	21	22	29	26	1.99
48637351--48637560	40	5.3	39	84	4	253	25	27	23	23	2.00
48640445--48640566	46	2.7	46	96	0	217	27	27	16	28	1.97
48642248--48642307	6	10.2	6	82	8	61	76	3	5	15	1.08
48642236--48642303	18	3.9	18	77	12	61	75	4	5	14	1.16
48648806--48648937	52	2.6	50	84	2	156	26	15	25	31	1.96
48648806--48649025	51	4.3	50	76	6	174	27	16	24	31	1.97
48648970--48649088	51	2.3	51	78	5	125	29	15	26	27	1.96
48653825--48653867	22	2.0	22	90	9	70	20	13	27	37	1.91
48657973--48658156	46	4.0	46	74	10	151	26	20	29	23	1.99
48665649--48665693	11	4.3	10	78	10	54	31	2	2	64	1.18
48665682--48665724	18	2.3	18	88	4	59	46	0	2	51	1.13
48665715--48665771	18	3.1	19	85	10	73	35	0	8	56	1.31
48665720--48665777	19	3.0	19	82	2	71	32	0	10	56	1.33
48666973--48667008	6	5.8	6	93	6	63	16	0	0	83	0.65
48669543--48669598	20	2.8	19	81	7	76	39	8	1	50	1.44
48670154--48670185	17	1.9	16	93	6	55	56	0	0	43	0.99
48671491--48671539	18	2.7	18	75	12	55	42	0	0	57	0.99
48671479--48671532	19	2.9	19	77	2	56	42	0	0	57	0.98
48672308--48672374	28	2.4	28	89	0	98	58	1	8	31	1.38
48672364--48672398	15	2.2	16	90	5	54	77	8	0	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48672363--48672399	16	2.3	17	81	13	51	78	8	0	13	0.96
48673394--48673480	45	2.0	44	90	2	138	50	16	4	28	1.64
48676423--48676468	23	2.0	22	83	4	56	54	4	0	41	1.20
48679349--48679406	26	2.2	26	93	0	98	34	5	24	36	1.78
48684255--48684514	131	2.0	131	87	3	382	35	18	18	28	1.94
48686988--48687083	17	5.4	18	71	13	56	58	6	3	32	1.39
48686976--48687042	34	2.0	33	85	5	89	62	5	0	31	1.19
48688103--48688159	28	2.0	28	100	0	114	40	24	0	35	1.56
48692693--48692767	33	2.3	33	85	0	96	40	20	14	25	1.90
48693777--48693817	21	2.0	21	100	0	82	39	9	24	26	1.86
48694257--48694298	17	2.5	16	82	17	50	19	2	0	78	0.86
48694270--48694308	20	2.0	20	89	0	60	20	5	0	74	1.01
48694484--48694546	31	2.1	30	88	8	92	28	38	1	30	1.66
48694830--48694871	13	3.3	13	73	6	50	19	19	2	59	1.49
48698880--48698952	26	2.8	25	79	4	83	39	9	16	34	1.81
48700208--48700263	27	2.1	27	100	0	112	26	10	25	37	1.88
48703158--48703235	31	2.5	31	79	4	77	51	11	6	30	1.63
48709729--48710525	2	398.5	2	100	0	1594	50	0	49	0	1.00
48711850--48711883	18	1.9	18	88	5	52	29	0	5	64	1.17
48714710--48714881	46	3.7	46	77	11	190	27	19	28	24	1.98
48714816--48715025	94	2.2	95	81	6	259	28	19	28	23	1.98
48714809--48715023	47	4.6	47	84	5	233	29	18	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48721789--48721827	20	1.9	20	84	5	51	53	0	2	43	1.14
48723048--48723095	11	4.4	11	94	0	87	70	0	29	0	0.87
48723048--48723095	4	13.0	4	81	16	59	70	0	29	0	0.87
48723043--48723095	15	3.6	15	80	16	58	69	0	28	1	0.99
48723130--48723163	11	3.0	11	86	4	50	70	0	26	2	1.01
48725860--48725902	22	2.0	21	82	8	52	53	2	18	25	1.56
48726401--48726552	27	5.6	27	88	2	205	27	14	27	30	1.95
48726401--48726552	55	2.8	55	87	2	225	27	14	27	30	1.95
48726401--48726552	82	1.9	82	88	0	232	27	14	27	30	1.95
48730442--48730480	20	1.9	20	84	5	51	61	2	2	33	1.23
48732402--48732496	47	2.0	47	100	0	190	65	0	8	26	1.21
48737380--48737478	50	2.0	49	98	2	189	12	8	53	26	1.65
48744676--48744715	16	2.5	16	95	0	71	12	2	32	52	1.52
48744754--48744817	26	2.5	26	94	0	119	42	0	15	42	1.47
48744945--48745203	126	2.1	126	85	1	340	35	15	17	30	1.92
48746265--48746322	19	3.2	19	68	22	61	36	1	10	51	1.46
48746268--48746334	35	1.9	35	93	0	116	34	1	13	50	1.51
48751270--48751367	27	3.6	27	70	22	87	57	5	4	33	1.40
48751253--48751385	56	2.4	56	97	0	248	51	7	3	37	1.45
48751292--48751378	27	3.2	26	67	23	70	52	6	2	37	1.41
48751781--48751815	18	1.9	18	94	0	61	40	2	28	28	1.71
48752433--48752479	7	6.7	7	95	0	85	57	12	0	29	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48753418--48753528	47	2.3	50	84	9	156	58	2	5	33	1.35
48753682--48753761	10	7.6	10	74	20	74	38	0	28	32	1.57
48753673--48753758	32	2.7	32	92	0	136	40	0	26	32	1.56
48764671--48764821	65	2.3	65	86	0	212	21	21	21	35	1.96
48764864--48764950	26	3.3	26	88	0	120	19	20	19	40	1.92
48764999--48765055	26	2.2	26	81	12	64	15	15	22	45	1.84
48766390--48766430	13	2.7	16	75	25	52	17	26	39	17	1.91
48778322--48778470	40	3.7	40	94	0	262	24	25	22	26	2.00
48786509--48786816	150	2.1	150	98	0	598	19	12	39	29	1.88
48787906--48788071	86	1.9	88	81	6	203	34	19	18	27	1.95
48787983--48788119	73	1.9	73	85	0	193	30	24	18	25	1.98
48787903--48788749	159	5.4	154	81	9	770	32	20	17	28	1.96
48788306--48788825	75	6.8	75	87	5	722	31	20	17	30	1.95
48787903--48788825	308	3.0	308	86	4	1162	32	20	17	28	1.96
48788381--48788829	233	1.9	233	93	1	767	32	19	17	30	1.95
48789997--48790105	42	2.6	41	78	11	105	14	27	15	42	1.86
48802059--48802083	13	1.9	13	100	0	50	40	0	0	60	0.97
48807715--48807749	5	6.8	5	90	3	52	17	5	0	77	0.96
48807715--48807751	15	2.4	16	86	9	58	18	8	0	72	1.08
48811543--48811570	3	9.3	3	100	0	56	35	0	0	64	0.94
48811717--48811761	21	2.1	21	84	12	56	37	0	2	60	1.09
48825969--48826020	22	2.4	22	93	0	86	57	17	5	19	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48830617--48830662	24	1.9	24	90	0	74	30	2	15	52	1.55
48834841--48835065	91	2.5	89	82	8	283	42	21	6	29	1.77
48834863--48835065	89	2.2	90	86	2	282	42	21	6	30	1.77
48835084--48835147	19	3.5	19	73	12	53	67	0	0	32	0.91
48835413--48835485	9	7.7	9	74	10	56	35	2	1	60	1.20
48835450--48835490	19	2.1	20	86	13	59	29	2	4	63	1.28
48835415--48835485	28	2.5	29	79	9	83	36	2	1	59	1.21
48836682--48837013	42	7.9	42	85	4	364	30	20	20	27	1.98
48836693--48837028	126	2.7	126	85	2	415	30	20	20	27	1.98
48837082--48837115	14	2.4	14	95	0	59	52	20	8	17	1.71
48837339--48837409	21	3.4	21	80	0	79	2	45	18	33	1.64
48842860--48843024	18	9.5	18	66	30	69	33	0	20	45	1.52
48842860--48843024	7	19.0	9	65	32	69	33	0	20	45	1.52
48842874--48843170	19	15.6	19	67	22	78	31	0	20	47	1.53
48842905--48843286	26	15.2	26	88	6	531	32	0	20	46	1.56
48842905--48843287	51	7.7	46	87	6	277	32	1	20	46	1.58
48843170--48843213	18	2.4	18	84	0	70	34	4	18	43	1.70
48845866--48845941	7	10.9	7	74	5	64	46	35	1	17	1.56
48845982--48846031	17	3.0	17	94	2	84	50	16	0	34	1.45
48846053--48846403	113	3.1	111	80	7	411	26	23	19	30	1.98
48846188--48846585	188	2.1	188	94	0	688	26	23	18	31	1.97
48846376--48846801	114	3.7	114	79	4	464	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48857250--48857294	21	2.1	21	91	0	72	37	13	22	26	1.91
48858631--48858667	13	2.8	13	87	4	56	43	0	13	43	1.44
48861624--48861686	24	2.6	24	92	0	108	41	17	7	33	1.79
48864258--48864355	23	4.3	23	90	2	162	31	26	21	20	1.98
48864265--48864353	45	2.0	45	95	0	160	31	26	22	19	1.97
48871630--48871727	23	4.3	23	90	2	162	31	26	21	20	1.98
48871637--48871725	45	2.0	45	95	0	160	31	26	22	19	1.97
48877334--48877443	26	4.2	26	95	2	177	36	24	4	34	1.76
48885637--48885669	17	1.9	17	93	0	57	75	0	24	0	0.80
48885917--48885976	30	2.0	30	96	0	111	26	5	16	51	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161