genome.fa.s22.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  109  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34744525--34744560	9	4.0	9	85	0	54	30	8	13	47	1.73
34744612--34744651	9	4.4	9	93	0	71	40	22	12	25	1.89
34746916--34746955	16	2.6	15	88	7	62	47	10	15	27	1.77
34750939--34750996	22	2.6	22	81	7	64	43	17	1	37	1.59
34750975--34751049	19	3.8	19	84	6	96	36	16	9	38	1.80
34750986--34751048	21	3.1	21	86	9	103	36	14	9	39	1.78
34751483--34751770	44	6.6	44	70	10	146	28	22	19	29	1.98
34751762--34752306	132	4.1	132	94	0	903	26	24	19	29	1.98
34751944--34752125	44	4.1	44	64	13	131	26	23	17	32	1.96
34752974--34753038	32	2.0	32	96	0	121	26	16	18	38	1.92
34758312--34758361	23	2.3	21	86	10	66	74	6	0	20	1.03
34758975--34759032	22	2.6	22	84	7	73	43	17	3	36	1.66
34758988--34759085	19	4.8	19	85	9	106	38	16	8	36	1.78
34759022--34759084	21	3.1	21	90	9	112	38	14	9	38	1.78
34762493--34762545	26	2.3	23	77	22	65	71	1	1	24	1.06
34764351--34764462	44	2.5	44	88	2	154	28	19	21	30	1.98
34774474--34774658	79	2.3	82	84	7	238	25	27	22	24	2.00
34774455--34774658	40	5.1	40	82	8	238	25	27	22	25	2.00
34782424--34782646	79	2.8	78	83	7	272	24	27	22	25	2.00
34782424--34782646	39	5.7	40	87	6	280	24	27	22	25	2.00
34788216--34788270	20	2.6	21	82	8	76	58	0	5	36	1.21
34793626--34793660	2	17.5	2	100	0	70	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34794496--34794567	29	2.4	29	81	9	83	45	13	15	25	1.83
34795503--34795549	24	1.9	24	83	12	60	42	0	2	55	1.12
34796755--34796817	31	2.0	31	96	0	117	42	6	19	31	1.76
34797458--34797504	24	2.0	24	86	0	67	23	14	29	31	1.95
34799021--34799060	21	1.9	21	85	10	55	35	27	5	32	1.79
34802760--34802814	21	2.9	18	77	20	58	54	1	1	41	1.21
34802764--34802814	17	2.7	18	80	19	59	56	1	1	39	1.22
34804390--34804432	19	2.3	19	100	0	86	27	23	18	30	1.98
34808209--34808499	141	2.0	142	95	1	521	27	23	13	35	1.93
34818651--34818753	53	1.9	53	86	0	143	34	10	23	31	1.89
34818909--34819003	28	3.4	26	75	12	75	27	18	25	28	1.98
34820828--34820890	25	2.6	24	82	5	81	19	28	17	34	1.94
34821070--34821150	25	3.3	25	77	1	83	16	27	22	34	1.95
34821056--34821187	25	5.3	25	73	10	76	18	27	21	32	1.97
34825595--34825633	16	2.4	17	91	4	62	35	0	0	64	0.94
34825925--34825993	31	2.1	33	81	7	79	68	0	31	0	0.90
34826044--34826081	17	2.2	17	95	0	67	36	0	18	44	1.50
34826162--34826647	112	4.6	102	79	14	511	27	0	14	57	1.43
34826163--34826663	218	2.3	213	86	5	661	27	0	14	57	1.42
34828418--34828485	32	2.1	32	94	0	118	38	17	22	22	1.93
34830847--34830965	43	2.8	43	84	7	161	28	27	19	24	1.98
34831852--34831908	28	2.0	28	90	6	89	38	5	0	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34832100--34832129	14	2.1	15	93	6	53	50	20	0	30	1.49
34835776--34835824	25	1.9	26	87	4	73	61	6	2	30	1.32
34837647--34837679	16	2.1	16	100	0	66	36	21	18	24	1.95
34837720--34837744	13	1.9	13	100	0	50	40	0	16	44	1.47
34837717--34837782	26	2.5	26	75	0	69	34	6	21	37	1.78
34837995--34838054	19	3.3	18	77	11	59	45	0	3	51	1.17
34839883--34839915	7	4.7	7	100	0	66	42	0	0	57	0.98
34854926--34854992	29	2.3	29	92	0	107	43	14	14	26	1.85
34857361--34857416	25	2.3	24	81	3	67	48	16	16	19	1.82
34859264--34859318	19	2.8	20	80	2	67	47	18	7	27	1.74
34859265--34859338	19	3.8	20	74	12	64	48	16	5	29	1.68
34861087--34861130	6	7.0	6	80	10	52	25	0	0	75	0.81
34861086--34861129	20	2.3	19	88	7	70	22	0	0	77	0.77
34864430--34864456	4	6.8	4	100	0	54	22	0	0	77	0.76
34868174--34868228	20	2.8	20	84	10	62	25	1	1	70	1.06
34868175--34868239	19	3.4	18	77	10	58	27	4	1	66	1.20
34876463--34876529	29	2.3	28	80	12	82	37	14	17	29	1.91
34876615--34876663	25	2.0	25	91	0	80	20	20	18	40	1.91
34876586--34876692	54	2.0	54	83	3	135	22	20	18	38	1.94
34876586--34876776	29	6.8	29	76	7	153	22	18	20	37	1.94
34877031--34877078	19	2.4	21	74	22	57	45	0	22	31	1.53
34877199--34877245	23	2.0	23	95	0	85	25	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34881444--34881691	50	4.9	50	79	6	225	29	19	27	23	1.98
34887157--34887186	14	2.1	14	93	0	51	36	13	3	46	1.60
34887461--34887485	10	2.5	10	100	0	50	52	8	0	40	1.31
34888805--34888837	6	5.7	6	85	7	50	69	3	0	27	1.03
34888833--34888874	22	2.0	21	85	4	57	64	4	2	28	1.26
34889382--34889603	43	5.2	43	75	8	166	29	26	18	25	1.98
34889403--34889603	86	2.3	86	84	1	251	30	26	18	23	1.98
34890691--34890782	46	2.0	46	84	2	121	40	10	19	29	1.86
34893863--34894010	40	3.7	39	81	5	161	29	21	18	30	1.97
34894506--34894547	15	2.9	15	85	3	50	35	38	0	26	1.57
34894893--34895046	82	1.9	82	91	0	254	32	28	17	21	1.96
34894893--34895053	41	3.9	41	87	0	214	31	29	18	20	1.96
34896747--34896785	3	13.0	3	100	0	78	33	0	0	66	0.92
34897496--34897548	13	3.4	16	75	17	58	50	3	1	43	1.30
34897478--34897548	30	2.3	31	88	7	101	52	4	2	40	1.36
34916927--34917016	40	2.3	40	84	1	110	43	27	15	13	1.84
34924718--34924749	6	5.3	6	100	0	64	15	0	53	31	1.43
34927598--34927662	28	2.2	30	89	8	98	32	7	3	56	1.43
34928691--34928871	42	4.4	42	80	8	192	30	25	17	26	1.97
34928691--34928895	81	2.5	80	81	8	207	27	23	18	29	1.98
34931919--34932027	54	2.0	54	96	0	200	36	16	18	28	1.92
34934465--34934763	50	5.9	50	85	4	373	20	30	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34934465--34934763	105	2.9	100	85	5	400	20	30	22	26	1.98
34934465--34934762	155	1.9	156	88	0	454	20	30	22	26	1.98
34942092--34942334	50	4.8	50	84	0	306	21	30	21	26	1.99
34945854--34945891	20	2.0	20	89	5	60	68	2	2	26	1.16
34945849--34945905	19	3.1	18	76	14	53	68	1	1	28	1.09
34946163--34946396	72	3.2	72	81	2	211	44	15	6	33	1.72
34946307--34946495	99	1.9	99	86	2	272	42	14	7	34	1.74
34946397--34946604	71	2.9	72	75	8	235	45	13	6	34	1.69
34946177--34946639	243	1.9	243	80	5	551	45	14	5	33	1.69
34949907--34950020	48	2.4	48	83	2	149	49	6	26	18	1.71
34950096--34950183	40	2.2	40	97	0	167	18	29	13	38	1.89
34954166--34954303	68	2.0	67	80	8	154	44	4	5	46	1.45
34956732--34956794	31	2.0	31	90	0	99	25	23	19	31	1.98
34965126--34965187	26	2.4	26	86	0	88	35	14	14	35	1.87
34971226--34971469	40	6.1	39	86	4	301	18	29	19	33	1.95
34971227--34971466	120	2.0	120	87	3	349	17	29	19	34	1.94
34979825--34979893	28	2.5	28	85	0	93	36	23	20	20	1.95
34980136--34980359	27	8.3	26	76	8	148	18	19	19	42	1.90
34980136--34980359	54	4.1	54	77	6	213	18	19	19	42	1.90
34980154--34980359	81	2.5	81	79	7	206	17	19	20	42	1.90
34987152--34987188	15	2.5	15	100	0	74	29	40	10	18	1.85
34988546--34988603	28	2.1	28	87	6	82	32	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34988716--34988778	26	2.4	26	81	5	74	41	25	17	15	1.89
34988952--34989215	27	9.8	27	79	5	175	18	19	21	40	1.91
34988964--34989215	54	4.7	54	83	1	299	17	19	21	42	1.90
34988962--34989213	81	3.1	80	82	4	283	17	20	21	41	1.90
34997242--34997282	21	2.0	21	95	0	73	43	12	7	36	1.70
35000917--35000951	12	3.0	12	91	4	54	57	8	0	34	1.29
35002200--35002235	13	2.8	13	86	0	54	41	25	0	33	1.55
35004025--35004084	32	1.9	31	83	10	77	43	6	6	43	1.57
35013585--35013687	52	2.0	52	84	0	134	41	18	14	25	1.88
35013585--35013727	27	5.4	27	80	3	146	42	18	13	25	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161