genome.fa.s22.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  96  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30329989--30330155	31	5.4	30	79	5	127	23	21	10	44	1.83
30329989--30330124	62	2.2	62	79	0	146	25	20	8	45	1.80
30333700--30333750	2	25.5	2	100	0	102	50	0	49	0	1.00
30337759--30338015	129	2.0	129	86	3	356	27	29	14	28	1.95
30345185--30345679	263	1.9	262	81	5	613	39	10	11	38	1.76
30351682--30352648	37	26.1	37	99	0	1880	26	34	18	19	1.95
30352769--30352895	47	2.7	47	82	2	148	26	31	9	32	1.88
30353875--30353921	23	2.0	23	95	0	85	17	29	12	40	1.86
30356593--30356655	23	2.8	21	76	9	54	17	6	38	38	1.75
30356617--30356727	21	5.2	20	77	13	91	9	2	43	44	1.52
30356632--30356717	42	2.0	42	97	0	163	11	2	40	45	1.53
30357242--30358156	73	12.6	72	91	3	1381	33	17	16	31	1.93
30357242--30358156	145	6.3	145	92	2	1446	33	17	16	31	1.93
30357242--30358156	218	4.2	216	90	3	1381	33	17	16	31	1.93
30369529--30369556	14	2.0	14	100	0	56	14	21	7	57	1.61
30379064--30379195	66	2.0	66	98	0	255	43	28	8	19	1.80
30385630--30385723	25	3.8	25	83	13	122	21	23	27	27	1.99
30392782--30392884	43	2.4	43	98	0	197	23	15	34	26	1.94
30392866--30392939	29	2.6	29	84	4	96	27	16	31	25	1.96
30393375--30393478	40	2.6	40	84	0	118	24	21	29	25	1.99
30393414--30393490	40	1.9	40	86	0	109	22	22	29	25	1.99
30395995--30396019	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30397079--30397190	51	2.2	51	96	1	206	39	11	15	33	1.83
30397755--30398165	47	8.6	48	88	3	555	32	8	29	29	1.86
30397755--30398165	96	4.3	97	89	5	579	32	8	29	29	1.86
30397759--30398163	143	2.8	144	88	3	586	32	8	29	29	1.86
30398284--30398362	37	2.1	37	90	0	122	24	18	31	25	1.98
30403414--30403523	42	2.6	42	95	0	193	21	30	23	24	1.99
30406320--30406398	37	2.1	37	90	0	122	25	31	18	24	1.98
30406519--30406831	47	6.5	47	87	4	421	29	29	8	32	1.87
30406519--30406831	96	3.3	96	88	4	447	29	29	8	32	1.87
30406519--30406831	143	2.2	144	88	2	459	29	29	8	32	1.87
30416036--30416129	45	2.1	44	90	3	152	28	24	12	32	1.92
30418248--30418302	28	2.0	27	82	6	67	43	1	1	52	1.22
30419116--30419140	12	2.1	12	100	0	50	56	0	16	28	1.41
30431484--30431611	20	6.3	20	73	8	98	13	27	17	41	1.87
30431484--30431592	40	2.7	40	84	0	146	12	28	18	40	1.87
30432838--30432867	11	2.7	11	89	0	51	10	6	26	56	1.57
30439272--30439403	66	2.0	66	100	0	264	36	18	7	37	1.79
30439626--30439803	27	6.6	27	83	3	178	29	28	15	26	1.96
30460760--30460849	45	2.0	45	100	0	180	28	17	28	24	1.97
30466651--30466721	7	10.0	7	83	13	83	52	0	45	2	1.15
30467403--30470733	146	22.8	146	99	0	6520	39	29	1	30	1.65
30470697--30470737	21	2.0	21	85	0	55	29	43	0	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30470838--30470874	14	2.6	14	95	0	65	48	29	0	21	1.50
30471198--30471388	41	4.7	41	88	1	276	33	23	19	23	1.97
30471456--30471566	40	2.8	40	82	4	136	19	19	21	38	1.93
30486006--30486030	13	1.9	13	100	0	50	4	88	0	8	0.64
30487257--30487290	15	2.3	15	89	0	50	73	5	0	20	1.04
30488644--30488708	30	2.2	29	81	13	71	15	6	6	72	1.25
30488989--30489038	26	1.9	26	84	8	66	24	2	2	72	1.06
30488994--30489040	16	2.7	17	80	12	51	23	2	2	72	1.06
30488993--30489049	26	2.2	25	75	6	60	28	1	1	68	1.09
30494589--30494630	18	2.3	18	100	0	84	35	7	19	38	1.79
30495922--30496028	27	4.0	27	67	17	69	26	26	17	29	1.98
30502607--30502698	27	3.4	27	81	10	89	30	22	9	36	1.87
30508263--30509124	426	2.0	426	99	0	1715	24	14	19	41	1.89
30516651--30516712	26	2.3	27	81	8	74	40	9	19	30	1.84
30518258--30518338	40	2.0	40	97	0	153	25	12	13	48	1.78
30518994--30519023	13	2.4	13	94	5	53	16	10	0	73	1.09
30523413--30523631	27	8.2	26	84	8	246	39	19	19	21	1.92
30523412--30523616	81	2.6	80	84	6	274	38	20	18	21	1.93
30523839--30523893	26	2.1	26	89	0	83	20	18	23	38	1.93
30524003--30524078	28	2.7	28	89	4	109	27	25	19	27	1.99
30523995--30524108	28	4.1	27	76	10	104	26	22	20	30	1.98
30524006--30524111	56	1.9	56	82	7	135	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30529299--30529334	3	12.0	3	100	0	72	0	33	0	66	0.92
30547205--30547442	28	8.5	28	97	0	415	26	12	28	33	1.92
30552471--30552505	2	17.5	2	100	0	70	0	51	0	48	1.00
30553340--30553480	70	2.0	70	97	0	264	30	2	20	46	1.62
30556990--30557219	43	5.3	42	89	4	282	20	20	33	26	1.97
30556991--30557219	86	2.6	87	89	3	329	20	20	33	25	1.97
30557698--30558034	168	2.0	168	97	0	629	38	8	22	30	1.83
30558227--30558473	50	4.8	50	80	5	221	29	20	27	23	1.99
30558239--30558424	100	1.8	102	84	6	259	27	20	27	23	1.99
30559839--30559894	27	2.0	28	83	10	71	39	23	23	14	1.91
30560398--30560576	90	2.0	91	97	1	342	28	10	13	48	1.75
30562676--30562707	16	2.0	17	88	11	50	71	18	0	9	1.12
30584572--30584614	19	2.2	20	84	12	63	32	18	0	48	1.48
30584743--30584838	41	2.5	38	77	6	104	32	27	16	23	1.96
30585520--30585569	18	2.7	19	84	6	59	56	2	2	40	1.22
30585802--30585857	29	1.9	29	82	7	69	50	7	1	41	1.40
30591438--30591504	33	2.1	33	94	2	118	46	13	20	19	1.83
30592174--30592218	7	6.1	7	85	10	63	17	42	0	40	1.50
30602336--30602432	42	2.3	42	81	10	110	22	21	39	16	1.92
30603280--30603335	20	2.8	20	86	0	67	12	16	12	58	1.62
30603305--30603354	25	2.0	25	84	0	64	6	18	18	58	1.59
30603320--30603368	25	2.0	25	87	0	71	6	22	16	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30604303--30604426	27	4.7	27	81	4	144	29	16	17	35	1.93
30605988--30606024	18	2.1	18	90	10	58	32	0	5	62	1.18
30611022--30611072	6	7.9	7	81	16	56	76	7	0	15	1.00
30611022--30611063	12	3.4	12	93	6	75	76	9	0	14	1.02
30611021--30611069	13	3.9	13	89	7	75	77	8	0	14	0.98
30611992--30612041	13	3.6	13	84	12	64	72	0	14	14	1.14
30611991--30612041	7	7.3	7	83	16	70	72	0	13	13	1.12
30613540--30614081	217	2.5	217	91	0	852	30	18	23	28	1.97
30613644--30614067	44	9.7	44	72	10	226	30	18	23	27	1.97
30615565--30615601	18	2.1	18	90	10	58	32	0	5	62	1.18
30617520--30617556	18	2.1	18	90	10	58	32	0	5	62	1.18
30622702--30622727	6	4.3	6	100	0	52	84	0	15	0	0.62
30623086--30623136	20	2.7	19	79	8	59	43	1	0	54	1.11
30633207--30633259	26	2.0	26	85	7	70	54	1	0	43	1.11
30633528--30633560	16	2.1	17	88	11	52	39	0	3	57	1.14
30643097--30643126	16	1.9	15	93	6	51	70	3	0	26	1.03
30644073--30644119	24	2.0	25	83	8	62	34	4	25	36	1.76
30653734--30653846	43	2.6	42	76	8	113	28	27	19	24	1.99
30662637--30662795	35	4.5	35	84	2	185	42	30	11	15	1.81
30669785--30669819	11	3.2	11	87	0	52	31	8	8	51	1.63
30672564--30672606	11	3.9	11	85	8	61	37	0	0	62	0.95
30673875--30674148	137	2.0	137	93	0	467	29	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30674451--30674488	18	2.1	18	90	0	58	26	28	5	39	1.78
30674902--30674995	44	2.1	44	86	0	125	34	0	11	54	1.37
30674963--30675070	25	4.3	25	96	0	189	43	0	14	41	1.46
30676310--30677417	554	2.0	554	100	0	2216	28	25	20	25	1.99
30680843--30680896	25	2.2	25	96	0	99	24	22	18	35	1.96
30680843--30680912	25	2.8	25	88	0	86	22	21	21	34	1.97
30683325--30683394	21	3.3	21	77	0	68	41	21	22	14	1.89
30698232--30698262	16	1.9	16	93	0	53	9	6	9	74	1.23
30704959--30704985	14	1.9	14	100	0	54	29	14	7	48	1.71
30705911--30705981	31	2.3	31	80	0	79	22	21	12	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161