genome.fa.s22.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  9  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011756--3011795	20	2.0	20	85	0	53	50	5	10	35	1.58
3011744--3011810	34	1.9	35	87	3	100	46	5	8	38	1.60
3012819--3012851	17	1.9	17	93	0	57	36	24	24	15	1.93
3014256--3014280	13	1.9	13	100	0	50	84	0	0	16	0.63
3015648--3015722	37	2.1	36	90	7	118	40	2	16	41	1.62
3015729--3015767	3	13.0	3	84	10	53	69	0	30	0	0.89
3015732--3015770	17	2.2	18	90	4	62	69	0	30	0	0.89
3016476--3016527	26	2.0	26	100	0	104	42	15	11	30	1.82
3017467--3017526	27	2.2	26	78	18	61	63	3	3	30	1.27
3017470--3017559	17	5.1	17	68	23	53	61	2	2	34	1.21
3017477--3017572	44	2.2	44	85	9	124	59	1	3	36	1.20
3017488--3017579	45	2.1	43	82	8	105	60	2	3	33	1.25
3018196--3018256	18	3.3	18	81	11	61	36	0	4	59	1.19
3018211--3018265	18	3.0	18	82	12	67	34	0	5	60	1.20
3019296--3019335	19	2.1	19	95	0	71	37	7	20	35	1.81
3019631--3019688	27	2.1	27	83	0	71	18	20	24	36	1.95
3029504--3029587	39	2.0	40	88	8	125	36	15	21	26	1.93
3030673--3030697	12	2.1	12	100	0	50	24	36	24	16	1.94
3030831--3030915	9	9.4	9	81	0	98	37	25	9	27	1.87
3030841--3030915	27	2.8	27	93	0	114	37	25	9	28	1.87
3030958--3031001	20	2.2	20	84	8	54	27	0	6	65	1.17
3030911--3031103	94	2.1	94	94	0	341	30	4	9	54	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3032546--3032615	29	2.3	29	83	9	79	28	12	10	48	1.74
3032608--3033223	203	3.0	203	97	0	1160	24	15	11	48	1.77
3039672--3039710	20	2.0	20	85	10	53	43	10	10	35	1.73
3043133--3043317	40	4.6	41	80	9	213	24	27	22	25	2.00
3048670--3048734	27	2.4	27	84	0	85	29	29	18	23	1.98
3054170--3054208	14	2.8	14	88	0	60	58	0	2	38	1.12
3067010--3067078	36	1.9	36	93	0	120	24	30	13	31	1.93
3077206--3077237	11	2.6	13	90	9	50	37	12	12	37	1.81
3078434--3078777	51	6.8	50	78	8	365	29	15	24	29	1.96
3078434--3078776	101	3.4	100	82	5	379	29	16	24	29	1.96
3078590--3078672	26	3.2	26	65	21	66	30	13	25	31	1.93
3078434--3078777	152	2.3	152	95	1	627	29	15	24	29	1.96
3083852--3083966	55	2.1	55	95	0	203	29	4	21	44	1.72
3085352--3085488	50	2.7	50	81	0	166	29	23	26	20	1.99
3085697--3085746	20	2.5	20	81	15	68	58	4	22	16	1.55
3088513--3088583	36	2.0	36	94	0	124	35	18	25	21	1.95
3093657--3093698	20	2.1	20	90	0	66	28	9	33	28	1.88
3096380--3096427	25	1.9	25	95	0	87	29	12	18	39	1.88
3100140--3100181	6	6.7	6	84	10	57	78	2	16	2	0.96
3107752--3107939	51	3.7	50	81	3	189	30	26	16	27	1.97
3108715--3108801	44	2.0	44	97	0	165	50	19	8	21	1.73
3122049--3122175	19	6.7	19	76	3	94	34	20	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3122093--3122175	38	2.2	38	88	0	130	31	19	20	28	1.97
3143987--3144052	20	3.3	20	76	0	60	19	16	21	42	1.89
3143995--3144059	20	3.2	20	73	0	67	16	18	23	41	1.90
3148199--3148335	27	5.1	26	79	7	123	35	18	18	27	1.94
3156304--3156841	264	2.0	264	98	0	1040	40	10	8	40	1.71
3158094--3158186	29	3.2	29	86	6	125	37	22	15	24	1.93
3158096--3158144	16	3.2	16	66	16	50	40	22	14	22	1.90
3158119--3158173	16	3.6	16	73	14	53	38	20	18	23	1.93
3185060--3185149	30	3.2	28	81	9	110	31	21	23	24	1.98
3185506--3185813	27	11.4	26	81	6	267	18	16	18	46	1.85
3185506--3185813	54	5.7	55	82	9	332	18	16	18	46	1.85
3185538--3185813	81	3.4	81	84	6	353	19	17	18	45	1.85
3191765--3191830	26	2.5	27	80	2	80	28	34	18	18	1.94
3207279--3207456	27	6.6	27	84	3	205	29	28	15	26	1.96
3207300--3207455	82	1.9	81	88	3	233	29	28	15	26	1.96
3209304--3209414	51	2.2	51	82	6	136	30	29	17	22	1.96
3212354--3212431	29	2.7	29	84	11	106	26	30	15	26	1.96
3216746--3216878	69	1.9	70	89	1	205	32	13	17	36	1.89
3218265--3218816	47	11.6	47	94	1	741	33	8	29	28	1.87
3235653--3235704	26	2.0	26	85	7	70	36	17	5	40	1.73
3235886--3235959	25	3.0	25	91	0	112	32	10	28	28	1.91
3238375--3238411	18	2.1	18	100	0	74	27	35	0	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238375--3238406	10	3.4	10	83	16	50	31	31	0	37	1.58
3244059--3244089	8	3.8	8	95	4	53	64	0	0	35	0.94
3244152--3244186	17	2.1	17	88	0	52	22	37	2	37	1.69
3245671--3245753	31	2.7	31	90	0	112	36	12	27	24	1.91
3247118--3247147	6	4.8	6	95	4	51	16	30	0	53	1.44
3251664--3251762	40	2.5	40	83	3	119	40	17	26	16	1.90
3252711--3252743	16	2.0	17	88	5	50	30	0	6	63	1.18
3255970--3256097	64	2.0	64	96	0	238	22	29	17	29	1.97
3263974--3264062	26	3.4	25	84	1	88	30	26	8	33	1.87
3263994--3264062	26	2.7	26	90	0	102	33	28	8	28	1.87
3267005--3267062	29	2.0	29	96	0	107	24	18	20	36	1.95
3267728--3267757	15	1.9	16	93	6	53	43	3	0	53	1.17
3267945--3267984	20	2.0	21	85	5	55	57	5	2	35	1.34
3269864--3269896	15	2.1	16	88	5	50	66	3	0	30	1.06
3270295--3270366	31	2.4	30	81	9	83	41	5	8	44	1.58
3270508--3270566	29	2.0	30	83	3	75	50	15	3	30	1.60
3272542--3272891	142	2.5	140	83	3	427	50	11	15	22	1.76
3282031--3282075	19	2.4	19	96	0	81	20	20	42	17	1.90
3296824--3297315	40	12.3	40	81	4	582	23	21	28	26	1.99
3296828--3297295	80	5.8	80	99	0	918	23	21	28	26	1.99
3303235--3303497	30	8.8	30	76	5	133	22	23	13	39	1.90
3303218--3303451	30	7.9	30	74	6	190	20	23	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3303295--3303481	59	3.2	59	72	11	166	22	23	12	41	1.88
3303218--3303458	89	2.7	89	88	1	331	21	23	14	41	1.89
3303235--3303510	119	2.3	119	75	6	272	22	23	12	40	1.89
3307342--3307370	6	4.8	6	100	0	58	17	0	0	82	0.66
3307701--3307984	23	12.4	23	71	10	179	44	19	11	25	1.84
3307701--3307984	47	6.2	46	70	9	170	44	19	11	25	1.84
3307701--3307988	68	4.2	69	94	2	465	44	19	11	25	1.84
3308792--3308931	41	3.4	41	84	3	174	34	28	17	19	1.95
3320625--3320707	34	2.4	35	82	6	98	26	25	22	25	2.00
3325259--3325297	19	2.1	19	85	0	51	15	5	7	71	1.26
3329241--3329588	40	8.7	40	95	0	561	30	20	27	22	1.98
3336553--3336757	40	5.1	40	93	0	347	31	19	26	22	1.98
3339730--3339786	26	2.2	26	83	3	69	29	19	15	35	1.93
3345028--3345098	33	2.1	34	84	2	90	28	21	22	28	1.99
3347679--3347774	44	2.2	44	86	3	131	27	10	30	32	1.90
3353031--3353151	45	2.7	45	90	0	179	22	16	27	33	1.95
3359617--3359794	27	6.6	27	84	3	205	29	28	15	26	1.96
3359638--3359793	82	1.9	81	88	3	233	29	28	15	26	1.96
3362998--3363093	21	4.4	21	72	21	65	33	0	2	64	1.05
3363017--3363090	28	2.7	28	74	12	64	33	0	1	64	1.02
3363015--3363094	5	16.4	5	71	18	53	35	0	1	63	1.02
3363024--3363094	25	2.7	26	75	16	67	33	0	1	64	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3363018--3363132	51	2.2	51	79	13	121	33	3	0	61	1.19
3363122--3363260	44	3.2	41	70	23	104	35	6	0	56	1.30
3363148--3363210	24	2.5	26	71	19	71	34	3	0	61	1.12
3363228--3363302	16	4.9	16	68	26	56	32	8	1	58	1.35
3363416--3363459	22	2.0	22	83	12	56	29	6	6	56	1.51
3368327--3368405	31	2.5	31	89	0	122	26	26	17	29	1.98
3368429--3368520	42	2.2	42	92	0	148	34	21	14	29	1.93
3368665--3368839	26	6.8	26	92	0	282	26	23	23	26	2.00
3368665--3368839	52	3.4	52	98	1	336	26	23	23	26	2.00
3369642--3369712	28	2.6	27	86	6	81	22	28	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161