genome.fa.s22.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  95  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30054251--30054299	22	2.3	22	85	3	73	20	12	6	61	1.52
30059665--30059844	90	2.0	90	98	0	351	32	21	18	26	1.97
30060799--30060858	15	4.1	14	75	12	57	15	5	1	78	1.00
30060818--30060849	17	1.9	16	93	6	55	18	0	0	81	0.70
30061828--30061919	42	2.2	43	82	2	105	32	7	6	53	1.55
30063997--30064063	30	2.2	30	84	10	84	31	14	2	50	1.58
30065518--30065637	64	1.9	64	89	0	186	47	10	12	30	1.74
30065863--30065995	62	2.2	62	81	8	148	42	11	4	41	1.61
30085225--30085283	9	6.6	9	82	7	75	45	20	8	25	1.79
30085225--30085283	27	2.2	27	90	0	91	45	20	8	25	1.79
30085935--30085974	16	2.5	16	88	11	64	42	7	22	27	1.80
30088186--30088221	17	2.1	17	100	0	72	11	11	11	66	1.45
30088549--30088612	33	1.9	34	87	6	96	43	17	4	34	1.69
30088869--30088938	23	3.2	21	88	7	72	21	7	25	45	1.77
30088881--30088938	23	2.5	23	97	0	107	20	8	27	43	1.81
30093034--30093241	91	2.3	91	91	0	326	45	3	4	46	1.41
30093156--30093216	28	2.2	28	85	5	81	45	0	3	50	1.17
30093074--30093216	44	3.2	43	68	20	112	46	2	3	47	1.34
30093295--30093505	66	3.4	64	71	19	219	41	2	6	49	1.42
30093257--30093554	120	2.5	120	92	2	501	42	2	4	50	1.36
30093511--30093552	15	2.7	16	82	14	52	45	0	2	52	1.13
30093502--30093543	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30093655--30093689	18	2.0	17	88	5	52	45	0	0	54	0.99
30093486--30093802	157	2.0	157	96	0	580	47	5	3	44	1.42
30096174--30096223	4	12.8	4	80	4	57	26	30	0	44	1.55
30097762--30097813	27	1.9	27	88	0	77	34	19	17	28	1.94
30101431--30101477	21	2.2	22	84	3	60	27	8	17	46	1.76
30112708--30112751	11	3.9	11	82	5	52	34	0	2	63	1.07
30115726--30115915	40	4.7	40	88	2	272	22	26	20	30	1.98
30115727--30115915	82	2.3	80	88	1	279	22	26	20	30	1.98
30120830--30120892	29	2.2	29	82	5	74	17	20	33	28	1.95
30124177--30124201	12	2.1	12	100	0	50	24	16	0	60	1.36
30124839--30124934	29	3.3	29	88	0	129	34	11	25	29	1.91
30124924--30125009	29	3.0	28	89	6	111	39	17	24	18	1.92
30130470--30130732	40	6.6	40	88	3	325	24	20	27	26	1.99
30130509--30130767	80	3.3	80	85	3	256	25	20	27	25	1.99
30138422--30138684	40	6.6	40	88	3	325	24	20	27	26	1.99
30138461--30138719	80	3.3	80	85	3	256	25	20	27	25	1.99
30150889--30151075	29	6.4	29	77	6	173	34	12	26	26	1.92
30150882--30151044	87	1.9	87	88	2	247	34	14	25	24	1.94
30150882--30151104	87	2.6	87	82	4	245	35	13	25	25	1.93
30150889--30151114	116	1.9	116	89	0	344	34	13	26	24	1.93
30150939--30151105	58	2.9	57	72	7	167	35	13	26	24	1.92
30153162--30153211	25	2.0	25	96	0	91	38	12	10	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30155984--30156041	29	2.0	29	89	0	89	17	24	15	43	1.87
30157227--30157275	20	2.5	19	78	12	55	18	24	4	53	1.62
30157585--30157709	56	2.4	52	82	9	139	24	28	20	28	1.99
30164921--30164969	20	2.5	20	81	15	66	12	24	6	57	1.58
30165259--30165363	50	2.1	50	83	3	131	17	29	24	28	1.97
30168624--30168764	63	2.2	63	83	0	165	27	26	22	22	1.99
30180512--30180586	29	2.5	30	84	4	107	21	26	12	40	1.88
30180512--30180597	29	2.9	29	84	3	100	20	25	15	38	1.92
30181994--30182024	15	2.1	15	93	0	53	32	9	0	58	1.31
30182554--30182614	23	2.7	23	75	12	63	34	13	0	52	1.40
30183034--30183444	107	3.9	106	89	1	601	30	19	18	31	1.96
30187935--30187980	12	3.8	12	97	0	83	43	41	13	2	1.55
30194862--30195519	263	2.5	263	92	0	1093	27	16	26	29	1.97
30194862--30195519	132	5.0	131	92	0	1073	27	16	26	29	1.97
30197505--30197652	39	3.8	39	99	0	287	18	17	9	54	1.70
30197711--30198119	106	3.9	107	93	0	646	31	18	18	32	1.95
30206096--30206171	40	1.9	40	86	0	107	30	14	25	30	1.95
30206305--30206362	28	2.1	28	86	0	80	22	13	31	32	1.93
30206336--30206522	41	4.6	40	89	7	252	20	20	27	31	1.98
30206335--30206522	82	2.3	81	88	4	288	20	20	28	30	1.98
30206901--30206956	21	2.6	22	77	2	60	21	3	33	41	1.70
30207122--30207164	22	2.0	22	85	0	59	20	4	32	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30207166--30207196	16	1.9	16	100	0	62	22	0	45	32	1.53
30207145--30207235	7	12.6	7	72	15	60	21	0	38	39	1.54
30206749--30207322	242	2.3	248	88	5	824	31	2	21	44	1.67
30209628--30209815	43	4.3	43	89	3	288	24	28	19	28	1.98
30211914--30211942	14	2.0	15	93	6	51	34	48	0	17	1.47
30212811--30212900	41	2.2	42	79	2	101	27	26	20	25	1.99
30213669--30213919	86	2.9	86	83	4	283	33	9	15	41	1.80
30213889--30214014	40	3.2	40	80	5	112	29	6	15	49	1.69
30216034--30216343	43	7.2	43	81	6	274	25	18	26	28	1.98
30216034--30216331	129	2.3	129	80	7	320	26	18	26	28	1.98
30216036--30216347	86	3.6	86	81	2	340	25	18	26	28	1.98
30219769--30219994	29	7.7	29	71	7	179	23	27	14	34	1.93
30219769--30219991	59	3.8	59	75	10	181	24	27	13	34	1.93
30219769--30219982	87	2.4	87	92	1	338	24	28	12	34	1.92
30224324--30224370	20	2.3	20	96	0	85	53	0	25	21	1.46
30224721--30224815	42	2.3	42	100	0	190	24	7	24	44	1.79
30225286--30225393	42	2.6	42	86	0	144	22	24	32	21	1.98
30228259--30228379	29	4.1	29	80	5	118	38	14	23	22	1.92
30232506--30232561	28	2.0	28	100	0	112	39	3	14	42	1.63
30232797--30233450	92	7.1	92	88	1	893	31	6	18	43	1.76
30232722--30233476	31	24.7	31	74	11	391	31	7	17	43	1.76
30241605--30241658	24	2.2	25	78	15	67	29	5	14	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30241629--30242324	61	11.4	60	72	9	358	32	6	16	43	1.75
30241659--30242281	31	20.4	31	71	10	415	33	6	16	43	1.75
30241659--30242281	92	6.8	92	85	2	745	33	6	16	43	1.75
30241649--30242217	275	2.1	276	87	1	809	33	6	16	44	1.73
30241635--30242281	275	2.3	272	82	4	794	32	6	16	43	1.75
30242040--30242318	31	9.1	31	73	8	133	32	8	16	42	1.78
30243437--30243487	26	2.0	26	92	0	84	23	9	23	43	1.83
30245881--30246142	39	6.7	40	87	7	337	25	22	27	24	2.00
30253685--30253948	40	6.7	40	89	5	360	25	21	27	25	1.99
30253685--30253981	119	2.5	118	81	9	338	26	21	27	25	1.99
30256249--30256294	22	2.1	22	87	0	65	39	13	15	32	1.85
30261680--30261713	14	2.4	14	90	0	50	52	0	23	23	1.47
30263980--30264089	33	3.3	33	78	6	123	15	8	32	43	1.76
30273755--30273799	24	2.0	24	86	8	67	35	4	0	60	1.17
30273940--30273978	16	2.5	15	87	4	51	0	12	5	82	0.83
30273940--30273978	5	7.6	5	85	5	51	0	12	5	82	0.83
30287040--30287078	20	1.9	21	89	5	62	43	0	12	43	1.42
30289273--30289312	17	2.2	18	86	8	55	57	5	17	20	1.58
30289740--30289778	21	1.9	20	89	5	60	41	0	0	58	0.98
30289738--30289785	21	2.3	21	75	7	53	45	0	0	54	0.99
30289781--30289826	17	2.8	17	75	15	51	34	0	0	65	0.93
30289749--30289833	29	2.8	31	77	21	92	37	0	1	61	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30289884--30289987	51	2.0	51	83	7	131	40	1	16	41	1.59
30310880--30310922	17	2.4	18	88	7	70	62	0	0	37	0.95
30310890--30310948	7	8.1	7	79	7	64	71	0	0	28	0.87
30310908--30310949	13	3.2	13	86	6	57	76	0	0	23	0.79
30312637--30312685	24	2.0	24	96	0	89	24	12	10	53	1.69
30312641--30312693	24	2.2	24	89	0	79	28	15	7	49	1.71
30319174--30319201	11	2.5	11	100	0	56	50	25	7	17	1.72
30321752--30321780	15	1.9	15	100	0	58	31	13	27	27	1.94
30322698--30322811	49	2.3	49	80	5	140	32	33	17	16	1.93
30324906--30324950	22	2.0	22	91	8	74	42	0	0	57	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161