genome.fa.s22.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  138  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42997852--42997877	5	5.2	5	100	0	52	57	0	42	0	0.98
43003258--43003287	6	5.0	6	100	0	60	33	0	16	50	1.46
43011767--43012727	240	4.0	240	99	0	1904	28	20	14	35	1.93
43018886--43018948	20	3.3	19	78	15	67	55	6	0	38	1.25
43025552--43025582	12	2.6	12	100	0	62	35	16	9	38	1.81
43026841--43026871	11	2.8	11	95	0	53	19	35	25	19	1.95
43029092--43029205	59	1.9	58	94	0	192	28	16	12	41	1.85
43029539--43029601	25	2.5	25	78	0	63	22	22	17	38	1.93
43029563--43029658	25	3.9	24	76	10	95	20	22	16	39	1.92
43029688--43029761	25	3.0	25	78	4	78	25	27	17	29	1.97
43029713--43029769	25	2.3	25	81	0	69	31	24	15	28	1.96
43031725--43031834	50	2.2	51	85	3	150	25	20	7	47	1.75
43042233--43042380	70	2.1	71	97	1	280	37	6	14	41	1.70
43042792--43042935	72	2.0	72	98	0	279	40	12	7	39	1.72
43045100--43045148	19	2.4	21	76	10	57	55	6	2	36	1.37
43054207--43054259	21	2.5	21	84	0	70	33	37	7	20	1.81
43054629--43054664	16	2.2	16	90	0	54	11	61	0	27	1.30
43060266--43060313	24	2.0	24	100	0	96	29	33	4	33	1.77
43063194--43063233	3	13.3	3	94	0	71	30	32	2	35	1.71
43068761--43068828	35	1.9	35	87	0	100	25	17	7	50	1.72
43069448--43069693	121	2.0	121	98	0	474	33	23	11	32	1.90
43072041--43072080	21	1.9	21	89	0	62	42	20	10	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43085949--43085996	18	2.7	18	100	0	96	43	6	6	43	1.54
43094695--43094736	15	2.7	16	82	14	52	45	0	2	52	1.13
43094686--43094727	15	2.9	15	82	10	52	47	0	0	52	1.00
43094950--43095019	16	4.4	16	92	0	95	31	35	0	32	1.58
43095936--43095984	25	2.0	25	84	15	66	53	0	0	46	1.00
43099527--43099551	13	1.9	13	100	0	50	84	0	8	8	0.79
43110459--43110650	94	2.0	95	90	3	307	37	17	13	31	1.88
43113967--43114014	6	8.2	6	97	2	89	50	33	0	16	1.46
43118946--43119014	12	6.3	11	71	17	54	62	2	5	28	1.33
43119222--43119260	19	2.0	21	85	10	55	69	5	10	15	1.34
43119455--43119510	21	2.8	19	82	10	76	37	16	8	37	1.80
43119466--43119509	21	2.1	21	100	0	88	38	13	9	38	1.77
43122554--43122626	37	2.0	37	88	0	110	38	19	2	39	1.66
43124281--43124317	6	5.8	6	90	9	56	45	16	16	21	1.84
43124297--43124440	45	3.3	43	80	11	179	40	20	18	20	1.92
43124301--43124440	39	3.4	39	85	5	172	40	21	17	20	1.92
43125509--43125541	16	2.1	16	94	0	57	3	18	0	78	0.87
43125550--43125621	5	14.4	5	74	20	62	55	2	0	41	1.14
43125551--43125603	19	2.8	19	78	13	65	58	0	0	41	0.98
43125557--43125619	25	2.5	26	82	7	69	57	3	0	39	1.15
43126933--43126964	16	1.9	17	93	6	57	46	0	0	53	1.00
43127595--43127629	14	2.5	14	85	0	52	22	57	2	17	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43128803--43128832	5	6.0	5	96	0	51	36	0	3	60	1.14
43129341--43129388	24	2.0	24	95	0	87	33	6	8	52	1.57
43130287--43130353	33	2.0	33	97	0	125	43	19	16	20	1.88
43131065--43131090	12	2.2	12	100	0	52	23	0	26	50	1.50
43136445--43136582	68	2.0	67	87	4	197	28	0	52	18	1.50
43136958--43136984	10	2.7	10	100	0	54	11	7	7	74	1.23
43137489--43137540	24	2.2	24	89	0	77	55	9	1	32	1.43
43145503--43145693	93	2.0	94	89	4	296	37	17	13	31	1.88
43149011--43149040	6	5.2	6	96	4	53	50	33	0	16	1.46
43152898--43152922	5	5.0	5	100	0	50	60	20	0	20	1.37
43162562--43162800	132	1.8	133	87	4	358	30	12	12	43	1.81
43163291--43163336	7	6.3	7	85	9	65	43	39	0	17	1.49
43163291--43163336	15	3.1	15	87	9	60	43	39	0	17	1.49
43163299--43163346	15	3.2	15	82	8	53	47	35	0	16	1.47
43163644--43163722	41	1.9	41	94	0	140	29	29	21	20	1.98
43163654--43164175	113	4.6	113	92	1	839	27	26	23	22	2.00
43163654--43164175	227	2.3	226	91	1	839	27	26	23	22	2.00
43164108--43164216	41	2.7	41	89	1	166	29	30	22	18	1.97
43166767--43166822	21	2.7	21	88	0	85	26	8	35	28	1.87
43166931--43166965	9	3.8	9	88	7	52	48	0	0	51	1.00
43173271--43173356	26	2.9	32	80	20	130	38	13	10	37	1.80
43177981--43178064	41	2.0	41	100	0	168	19	11	14	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43181047--43181087	18	2.3	18	95	0	73	31	26	19	21	1.97
43185602--43185716	54	2.1	53	93	3	194	41	16	20	20	1.90
43198253--43198473	111	2.0	111	93	1	381	32	16	17	33	1.92
43200298--43200348	27	1.9	26	88	4	75	17	0	11	70	1.16
43200997--43201100	53	2.0	53	81	7	122	52	22	15	9	1.71
43208451--43208487	19	2.0	18	89	5	56	54	0	18	27	1.44
43208484--43208516	5	6.6	5	92	0	57	24	0	39	36	1.56
43215455--43215573	43	2.7	42	78	6	139	28	27	17	26	1.98
43216044--43216130	17	5.1	17	70	13	61	49	12	11	26	1.75
43216050--43216159	34	3.2	34	78	7	114	45	12	11	30	1.78
43216779--43216841	17	3.6	17	80	2	63	1	19	0	79	0.82
43216773--43216862	29	2.9	29	77	15	92	2	20	0	77	0.87
43216787--43216864	38	2.1	38	82	4	95	2	16	0	80	0.82
43216770--43216863	17	5.4	17	72	17	59	2	19	0	78	0.85
43217015--43217052	10	3.8	10	83	13	51	0	0	13	86	0.56
43217062--43217086	6	4.2	6	100	0	50	0	0	48	52	1.00
43217082--43217123	12	3.5	12	96	0	75	0	21	59	19	1.38
43217143--43217173	14	2.3	13	94	5	53	12	0	0	87	0.55
43217173--43217211	3	12.3	3	89	10	60	0	30	0	69	0.89
43217172--43217211	10	4.1	10	81	18	57	0	30	0	70	0.88
43217176--43217209	7	5.1	7	92	7	54	0	29	0	70	0.87
43217274--43217332	20	2.8	21	76	21	61	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43217277--43217330	18	2.8	21	81	13	62	0	38	0	61	0.96
43217283--43217332	11	4.4	11	77	7	55	0	36	0	64	0.94
43217557--43217709	29	5.2	30	87	3	213	39	4	22	33	1.74
43217568--43217710	59	2.4	58	92	1	232	39	4	21	34	1.73
43217702--43217737	17	2.1	18	89	5	56	13	0	8	77	0.98
43218680--43218736	28	2.0	28	90	6	89	38	5	0	56	1.22
43220494--43220582	45	2.0	46	80	10	103	33	12	25	28	1.92
43220605--43220662	24	2.4	24	88	0	89	36	8	22	32	1.85
43221203--43222428	44	27.3	44	80	6	1295	29	20	22	28	1.98
43221203--43222428	88	13.7	88	85	7	1560	29	20	22	28	1.98
43221112--43222428	230	5.9	228	85	5	1458	29	19	22	28	1.98
43226881--43227003	50	2.5	50	90	0	192	18	27	19	34	1.95
43226873--43227003	25	5.2	25	87	0	172	18	28	19	33	1.96
43231685--43231727	22	1.9	23	86	13	63	9	6	6	76	1.15
43234260--43234303	21	2.0	22	83	12	56	38	2	11	47	1.52
43235059--43235991	43	21.7	43	99	0	1789	20	18	28	32	1.97
43239140--43239169	16	1.9	15	93	6	51	30	13	3	53	1.56
43241352--43241502	69	2.2	69	83	2	187	39	5	16	38	1.73
43242949--43243013	22	3.0	22	85	14	91	24	30	0	44	1.54
43242950--43243016	11	6.2	10	85	11	80	25	29	0	44	1.54
43242953--43243025	33	2.2	33	80	9	87	28	27	0	43	1.55
43242955--43243025	22	3.2	22	70	7	56	29	26	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43243013--43243076	28	2.4	28	84	5	78	39	3	1	56	1.25
43244191--43244229	7	5.6	7	96	0	69	28	0	17	53	1.44
43245445--43245563	61	2.0	61	84	0	157	29	10	8	52	1.64
43248617--43249035	126	3.3	126	91	0	658	28	20	18	32	1.96
43249074--43249251	96	1.9	95	84	5	243	44	16	2	37	1.60
43257001--43257175	90	1.9	90	82	0	215	27	20	16	35	1.94
43269967--43270014	6	7.8	6	86	4	69	79	4	0	16	0.89
43269983--43270023	7	6.0	7	86	11	50	80	2	0	17	0.82
43269966--43270023	25	2.2	27	84	9	84	75	6	0	17	1.01
43269974--43270023	19	2.5	19	90	6	73	78	4	0	18	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161