genome.fa.s22.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  52  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16048470--16048506	19	2.0	20	89	10	60	29	0	5	64	1.15
16048620--16048659	16	2.4	17	87	4	55	42	17	0	40	1.49
16056101--16056132	4	8.0	4	100	0	64	0	25	0	75	0.81
16063469--16063511	18	2.5	17	81	7	50	58	11	2	27	1.46
16066380--16066412	16	2.1	16	94	0	57	27	9	30	33	1.88
16068151--16068293	46	3.1	46	84	0	178	20	17	20	41	1.91
16068151--16068293	23	6.2	23	80	3	153	20	17	20	41	1.91
16081259--16081291	16	2.0	16	94	5	57	87	0	12	0	0.53
16081310--16081417	54	2.0	54	98	0	207	29	26	12	30	1.93
16086938--16087004	34	2.0	34	87	0	98	23	10	29	35	1.89
16102945--16102978	13	2.6	13	85	0	50	41	0	29	29	1.57
16107161--16107236	35	2.1	36	83	7	93	32	9	21	36	1.85
16107755--16107825	27	2.6	27	90	0	106	23	12	21	42	1.87
16111375--16111509	38	3.5	38	76	4	137	29	25	25	19	1.98
16111372--16111514	77	1.9	77	85	2	198	28	27	25	18	1.98
16111498--16111575	41	1.9	41	86	5	113	34	32	16	16	1.92
16121950--16122204	30	8.5	30	75	7	164	24	23	14	38	1.92
16121950--16122204	60	4.3	61	76	9	211	24	23	14	38	1.92
16121950--16122258	90	3.5	89	71	8	252	23	23	14	37	1.92
16122156--16122218	30	2.1	30	84	0	81	19	26	17	36	1.94
16125522--16125652	27	4.9	27	79	0	136	32	21	14	32	1.93
16128426--16128502	26	3.0	26	86	0	109	38	23	18	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16134975--16135009	17	2.1	17	100	0	70	22	22	11	42	1.85
16137433--16137481	20	2.5	19	84	15	64	36	30	4	28	1.76
16137502--16137555	26	2.1	26	82	0	63	20	11	24	44	1.83
16137518--16137574	27	2.2	26	87	3	78	22	7	29	40	1.80
16138894--16138951	28	2.1	28	100	0	116	43	13	15	27	1.85
16145063--16145118	24	2.3	24	84	0	67	21	14	35	28	1.92
16149945--16150059	43	2.7	43	83	0	122	32	16	16	34	1.91
16150513--16150565	21	2.5	21	90	0	79	5	45	15	33	1.69
16160405--16160485	41	2.0	41	87	0	117	24	17	18	39	1.92
16160413--16160510	41	2.4	41	78	0	106	28	17	17	36	1.92
16165520--16165584	32	2.0	32	100	0	130	24	15	21	38	1.92
16181749--16181921	25	7.0	25	78	3	152	34	21	16	27	1.95
16181749--16181923	75	2.4	74	80	4	192	34	22	16	26	1.95
16181860--16181933	25	3.0	25	76	11	71	40	20	12	27	1.87
16183366--16183485	59	2.1	56	86	6	161	48	12	10	28	1.74
16183380--16183493	59	1.9	59	90	0	183	47	10	11	30	1.73
16189027--16189135	43	2.6	42	78	5	114	55	11	13	19	1.67
16196300--16196345	22	2.0	24	88	12	71	67	0	8	23	1.18
16197081--16197380	45	6.9	44	72	15	164	27	24	19	29	1.98
16197220--16197331	43	2.6	43	82	4	127	28	24	19	27	1.99
16196969--16197380	216	1.9	217	90	2	668	28	22	19	28	1.98
16197533--16197717	43	4.3	43	84	4	214	29	31	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16197533--16197720	86	2.2	86	82	3	236	30	31	14	22	1.94
16197992--16198086	43	2.2	43	90	0	145	45	9	11	33	1.73
16202354--16202383	15	2.0	15	93	0	51	30	50	0	20	1.49
16202754--16202791	14	2.8	14	84	4	51	44	23	0	31	1.54
16203111--16203263	41	3.7	41	92	3	256	28	28	21	20	1.98
16203329--16203441	40	2.8	40	85	4	140	18	21	23	36	1.95
16211282--16211328	20	2.3	20	85	0	67	21	12	36	29	1.91
16212500--16212545	24	1.9	24	86	0	65	10	26	17	45	1.81
16223093--16223275	50	3.6	50	90	0	267	34	10	24	31	1.89
16232082--16232115	11	2.8	12	91	8	52	41	0	29	29	1.57
16232168--16232210	2	21.5	2	95	0	77	48	0	51	0	1.00
16250324--16250441	60	2.0	60	81	3	139	31	15	20	33	1.93
16262575--16262605	16	1.9	16	93	0	53	48	0	9	41	1.36
16264181--16265422	100	12.4	100	82	2	1317	24	20	22	32	1.98
16264865--16265422	50	11.1	49	66	10	137	24	20	22	32	1.98
16265475--16266463	142	7.0	142	92	0	1595	27	21	18	33	1.96
16266371--16266492	43	2.8	44	81	5	131	28	22	19	29	1.98
16268823--16268870	20	2.4	20	92	0	78	12	4	8	75	1.18
16273668--16273698	16	1.9	16	93	0	53	48	0	9	41	1.36
16275255--16276616	50	27.2	50	71	4	758	23	20	22	32	1.98
16275228--16276616	100	13.9	100	86	2	1612	23	20	22	32	1.98
16276718--16277259	44	11.7	44	65	20	149	28	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16276661--16277230	142	4.0	142	93	1	887	28	20	17	34	1.95
16279106--16279157	16	3.2	16	100	0	104	26	11	30	30	1.92
16283287--16283333	14	3.0	17	82	17	50	51	0	6	42	1.27
16283306--16283337	14	2.3	14	100	0	64	53	0	0	46	1.00
16287434--16287471	19	2.1	19	90	9	62	42	7	0	50	1.31
16290062--16290155	48	2.0	48	100	0	188	28	12	14	43	1.83
16291557--16291600	20	2.3	18	84	7	52	59	0	22	18	1.38
16294296--16294339	10	4.6	10	83	5	56	22	43	0	34	1.54
16296171--16296236	32	2.1	31	88	5	105	22	36	9	30	1.85
16305340--16305404	32	2.0	32	100	0	130	24	12	33	29	1.92
16306608--16307144	267	2.0	266	96	0	984	39	13	17	30	1.87
16330710--16331926	44	27.7	44	88	0	1734	32	17	24	26	1.97
16330710--16331915	88	13.7	88	95	0	2011	32	17	24	26	1.97
16333741--16333876	68	2.0	68	95	0	245	22	15	14	47	1.82
16342682--16342724	7	5.9	7	81	10	50	55	6	2	34	1.39
16342680--16342710	16	1.9	16	100	0	62	51	6	6	35	1.53
16345252--16345306	22	2.6	22	81	13	62	38	9	14	38	1.78
16345259--16345316	22	2.7	23	78	7	59	37	5	15	41	1.70
16345901--16345943	16	2.5	17	81	7	52	34	6	4	53	1.49
16345874--16346035	48	3.2	48	70	20	132	33	6	4	54	1.46
16345937--16345982	20	2.3	20	84	0	65	36	8	0	54	1.32
16345920--16346084	52	3.1	51	72	19	158	34	9	3	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16345874--16346090	104	2.0	105	89	5	330	33	7	4	54	1.48
16346045--16346082	20	1.9	20	88	0	58	31	13	0	55	1.38
16346112--16346151	16	2.3	18	83	12	57	42	0	0	57	0.98
16352643--16352671	14	2.0	15	93	6	51	82	0	10	6	0.83
16358160--16358188	9	3.3	9	95	4	51	55	24	0	20	1.44
16358323--16358447	54	2.3	54	81	2	135	28	22	16	32	1.95
16358322--16358447	27	4.7	27	76	10	107	28	22	15	33	1.95
16368007--16368036	15	2.0	15	100	0	60	26	0	13	60	1.34
16370510--16370549	17	2.3	18	82	8	55	37	30	12	20	1.89
16377108--16377402	148	2.0	147	80	4	326	25	27	14	32	1.95
16381307--16381378	36	2.0	35	81	2	81	30	11	25	33	1.90
16394329--16394359	16	1.9	16	93	0	53	83	0	16	0	0.64
16414575--16414630	29	1.9	29	92	0	94	46	25	10	17	1.80
16433754--16433812	30	2.0	30	86	0	82	40	15	20	23	1.90
16434754--16434823	30	2.3	30	97	2	131	42	5	24	27	1.77
16434754--16434801	15	3.2	15	71	11	53	47	6	20	25	1.73
16434767--16434820	15	3.7	15	73	11	58	42	7	22	27	1.80
16434770--16434820	14	3.5	14	70	19	50	43	5	23	27	1.77
16437555--16437602	25	1.9	25	91	0	78	47	0	20	31	1.50
16443372--16443426	19	2.7	20	80	11	67	67	7	21	3	1.31
16455628--16455662	17	2.1	17	100	0	70	34	22	25	17	1.96
16464730--16464991	131	2.0	131	96	0	479	35	28	7	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16468031--16468132	24	4.2	24	71	8	82	34	19	25	20	1.96
16472196--16472225	15	2.0	15	93	0	51	3	13	30	53	1.56
16476783--16476881	9	10.9	9	74	14	87	62	4	0	33	1.14
16476786--16476876	19	4.9	18	78	16	80	63	3	0	32	1.10
16476783--16476891	29	3.9	27	74	16	98	61	3	0	34	1.14
16477372--16477448	9	8.0	9	75	13	64	37	2	2	57	1.27
16477372--16477453	29	2.8	29	79	5	85	37	2	2	57	1.25
16478662--16479093	43	10.1	42	88	2	576	30	25	21	22	1.99
16478662--16479093	85	5.1	84	93	1	558	30	25	21	22	1.99
16478662--16479093	128	3.4	126	87	3	605	30	25	21	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161