genome.fa.s22.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  94  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29799740--29799774	17	2.1	17	88	0	52	68	2	8	20	1.29
29800602--29800644	13	3.5	13	75	18	56	48	13	0	37	1.43
29800602--29800653	23	2.3	23	96	0	95	50	13	0	36	1.42
29802404--29802458	25	2.2	25	78	12	60	61	7	9	21	1.50
29802678--29802715	14	2.7	15	84	12	53	26	0	28	44	1.54
29802692--29802746	21	2.6	21	78	18	60	20	0	38	41	1.52
29802731--29802782	22	2.4	21	81	9	59	21	0	44	34	1.52
29802831--29802878	25	1.9	25	95	0	87	35	0	2	62	1.07
29803035--29803071	14	2.6	15	83	12	51	27	2	32	37	1.71
29803066--29803140	21	3.6	21	77	10	73	26	0	38	34	1.57
29803069--29803165	14	6.9	14	67	13	56	25	1	39	34	1.63
29803238--29803287	25	2.0	24	81	11	57	46	8	4	42	1.52
29804033--29804080	19	2.5	19	75	0	51	29	47	2	20	1.61
29807838--29808019	43	4.3	43	82	6	226	25	19	29	25	1.98
29807838--29808019	85	2.1	86	86	5	253	25	19	29	25	1.98
29809000--29809401	144	2.8	144	94	1	700	30	10	21	38	1.87
29810904--29811245	51	6.7	50	81	6	361	28	15	26	30	1.96
29810904--29811242	102	3.3	101	88	2	450	28	15	26	29	1.96
29810899--29811245	153	2.3	152	83	3	430	28	15	25	29	1.96
29815660--29815795	50	2.7	51	96	1	247	28	17	25	28	1.98
29818587--29818674	27	3.3	27	91	0	122	35	13	27	23	1.93
29818600--29818689	27	3.3	27	88	0	90	37	14	23	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29822526--29822563	11	3.4	11	92	3	58	50	0	7	42	1.31
29825885--29826041	41	3.8	41	87	3	217	19	21	29	29	1.97
29828649--29828682	18	1.9	18	94	5	61	38	5	0	55	1.24
29830054--29830362	43	7.2	42	81	5	325	22	18	33	26	1.97
29830122--29830363	129	1.9	129	87	0	358	21	20	33	24	1.97
29832081--29832112	16	1.9	16	93	6	55	65	0	0	34	0.93
29834998--29835076	25	3.2	25	84	8	99	32	18	18	29	1.96
29836196--29836445	27	9.3	27	85	3	315	21	16	19	42	1.89
29843143--29843284	27	5.3	27	87	1	187	21	13	19	45	1.84
29847132--29847167	18	2.0	18	100	0	72	38	0	0	61	0.96
29848456--29848517	25	2.5	25	75	0	61	24	27	20	27	1.99
29854675--29854731	25	2.3	25	87	0	87	33	21	19	26	1.97
29859845--29860029	79	2.3	82	84	7	238	25	27	22	24	2.00
29859826--29860029	40	5.1	40	82	8	238	25	27	22	25	2.00
29873328--29873512	101	1.8	101	85	8	259	24	16	26	32	1.96
29873325--29873510	51	3.7	49	77	7	178	24	16	26	32	1.96
29879462--29879637	50	3.5	50	77	6	146	31	22	25	20	1.98
29879520--29879644	49	2.5	48	82	6	144	30	22	24	22	1.99
29897518--29897891	44	8.5	44	77	3	225	30	20	22	27	1.98
29897475--29897858	89	4.3	87	78	5	335	28	19	24	27	1.98
29897474--29897891	133	3.2	131	81	4	412	29	20	23	26	1.99
29897521--29897871	131	2.7	132	83	4	397	30	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29902203--29902255	28	2.0	26	85	7	70	26	1	3	67	1.17
29902376--29902424	20	2.5	20	76	6	55	53	2	0	44	1.12
29905090--29905146	21	2.7	21	86	0	78	49	21	8	21	1.76
29906060--29906119	21	2.9	21	80	7	70	35	1	3	60	1.23
29906137--29906176	19	2.1	19	85	0	53	35	2	5	57	1.34
29908469--29908511	20	2.2	20	92	8	72	53	0	9	37	1.33
29909048--29909101	16	3.4	15	75	10	54	7	48	16	27	1.73
29912027--29912056	14	2.1	14	93	0	51	50	3	0	46	1.18
29912042--29912192	30	5.1	30	77	11	141	32	15	2	49	1.58
29912037--29912210	60	2.9	58	81	10	185	32	15	2	49	1.59
29912032--29912211	29	6.2	28	78	10	159	33	15	2	48	1.59
29912710--29912766	17	3.3	18	76	13	57	77	0	19	3	0.92
29912709--29912767	26	2.3	25	82	5	73	76	0	20	3	0.93
29918362--29918518	30	5.2	30	83	5	165	46	1	17	34	1.59
29918380--29918518	60	2.3	60	87	3	199	48	2	16	33	1.58
29927405--29927524	41	2.9	41	93	0	213	31	16	20	31	1.95
29927492--29927800	138	2.2	138	86	2	433	28	18	21	32	1.96
29927718--29927801	44	1.9	44	87	0	123	27	17	21	33	1.96
29927534--29927852	138	2.3	138	81	4	349	28	18	20	32	1.96
29952297--29952474	59	3.0	59	100	0	356	50	5	3	41	1.41
29952645--29952682	15	2.6	14	91	8	58	13	34	5	47	1.65
29956281--29957697	128	11.1	128	93	0	2179	25	22	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29959181--29959219	7	5.7	7	90	9	55	12	15	0	71	1.14
29960133--29960210	6	12.7	6	85	5	57	7	10	14	67	1.40
29960165--29960210	12	3.8	12	94	0	74	4	10	15	69	1.32
29960165--29960210	18	2.6	18	92	0	74	4	10	15	69	1.32
29966852--29966877	12	2.2	12	100	0	52	7	15	30	46	1.74
29967108--29967199	41	2.2	41	88	5	132	22	22	29	25	1.99
29967126--29967858	116	6.4	114	90	3	1104	25	21	26	25	2.00
29968121--29968161	16	2.5	17	92	4	66	21	0	46	31	1.52
29974439--29974684	43	5.8	42	84	4	287	23	15	27	34	1.95
29974476--29974684	86	2.4	86	88	0	319	22	15	27	34	1.94
29981469--29981515	9	5.2	9	84	0	67	29	10	21	38	1.87
29981469--29981525	18	3.1	18	89	2	87	31	12	19	36	1.89
29981942--29981971	15	1.9	16	93	6	53	23	30	0	46	1.52
29982431--29982458	5	5.6	5	100	0	56	21	17	17	42	1.89
29982546--29982572	5	5.4	5	100	0	54	18	18	18	44	1.87
29985184--29985219	6	6.0	6	93	0	63	86	13	0	0	0.58
29985184--29985229	12	3.8	12	80	8	58	84	13	2	0	0.71
29985184--29985229	18	2.6	17	86	6	65	84	13	2	0	0.71
29986353--29986408	21	2.7	21	83	5	69	32	21	17	28	1.96
29987740--29987876	65	2.1	65	97	0	256	27	39	7	26	1.82
29988458--29988497	21	1.9	21	94	0	71	55	0	5	40	1.22
30002178--30002220	21	2.0	21	91	8	70	60	6	0	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30004415--30004611	90	2.2	89	82	4	236	30	22	17	29	1.97
30006066--30006113	21	2.3	21	85	0	60	16	8	12	62	1.53
30006075--30006115	21	2.0	21	95	0	73	14	7	12	65	1.45
30010836--30010873	20	1.9	20	88	0	58	42	26	5	26	1.76
30014498--30014539	21	2.0	21	100	0	84	28	14	9	47	1.75
30026504--30027448	85	11.0	86	69	12	343	33	20	20	25	1.97
30026505--30026885	44	9.0	43	70	10	183	34	20	20	24	1.97
30026461--30027448	129	7.7	129	73	7	598	33	20	20	25	1.97
30026551--30027048	214	2.3	213	86	1	674	33	20	20	26	1.97
30026980--30027448	44	10.8	44	72	9	318	33	20	21	24	1.97
30026810--30027138	173	1.9	170	81	3	399	33	20	20	25	1.97
30026809--30027446	303	2.1	302	91	0	1017	33	20	20	25	1.97
30027116--30027438	173	1.9	171	85	2	450	31	21	22	24	1.98
30031834--30031951	41	2.9	41	93	1	191	24	22	25	27	1.99
30032332--30032362	14	2.1	15	94	5	55	32	0	35	32	1.58
30032384--30032435	14	3.7	14	86	0	59	26	0	36	36	1.57
30032384--30032448	7	9.3	7	73	6	51	26	0	36	36	1.57
30032829--30032994	76	2.2	75	95	1	296	46	12	9	31	1.73
30032893--30033110	115	1.9	116	94	0	384	44	14	11	29	1.80
30033004--30033273	76	3.5	76	91	0	441	46	12	7	33	1.69
30032829--30033183	191	1.9	192	94	0	631	45	13	9	31	1.75
30033307--30033354	22	2.4	19	83	13	60	25	47	0	27	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30034524--30034583	24	2.5	24	86	2	86	23	10	10	56	1.62
30037628--30037874	43	5.8	42	87	1	314	24	17	30	27	1.97
30037628--30037874	129	1.9	128	86	2	352	24	17	30	27	1.97
30045599--30045648	17	3.0	16	82	8	55	24	10	26	40	1.86
30045622--30045675	17	3.2	17	81	0	63	22	5	24	48	1.72
30046789--30046854	33	2.0	33	93	0	114	22	22	10	43	1.84
30047161--30047259	27	3.7	27	74	8	103	21	19	13	46	1.83
30047305--30047391	26	3.3	26	76	7	86	21	26	11	40	1.87
30052576--30052642	33	2.0	33	97	0	125	35	4	16	43	1.68
30054060--30054161	53	1.9	53	82	4	125	26	24	26	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161