genome.fa.s22.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  149  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46499928--46499981	22	2.4	22	81	9	56	38	5	1	53	1.35
46503195--46503312	57	2.0	58	83	12	150	31	19	22	26	1.98
46503225--46503337	57	2.0	57	87	3	165	31	18	23	25	1.97
46504920--46505001	9	9.0	9	70	15	53	36	0	17	46	1.48
46504914--46505082	30	5.7	31	75	16	164	38	0	15	46	1.46
46505111--46505199	9	9.9	9	71	4	72	38	1	16	43	1.56
46505147--46505260	49	2.3	48	83	8	133	40	1	10	47	1.48
46505854--46505898	21	2.1	21	91	0	72	48	13	26	11	1.75
46506980--46507029	24	2.0	25	84	3	66	42	4	2	52	1.31
46507011--46507049	21	1.9	21	89	5	62	43	0	0	56	0.99
46507217--46507246	14	2.1	14	93	0	51	30	50	0	20	1.49
46507466--46507514	7	6.9	7	83	4	62	42	30	0	26	1.55
46507473--46507516	15	3.0	15	83	3	54	43	31	0	25	1.55
46507541--46507585	14	3.2	14	83	0	63	48	26	0	24	1.51
46507747--46507776	14	2.1	14	93	0	51	30	50	0	20	1.49
46507996--46508044	7	6.9	7	83	4	62	42	30	0	26	1.55
46508003--46508046	15	3.0	15	83	3	54	43	31	0	25	1.55
46507049--46508196	530	2.2	530	98	0	2212	43	25	1	29	1.62
46508071--46508115	14	3.2	14	83	0	63	48	26	0	24	1.51
46508495--46508560	21	3.1	21	73	0	60	46	30	3	19	1.65
46508495--46508567	14	5.2	14	74	0	56	46	28	4	20	1.69
46508585--46508915	152	2.1	155	84	6	424	28	21	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46508803--46508927	40	3.1	39	78	6	108	25	23	20	30	1.99
46508863--46508942	40	2.0	40	90	0	124	23	21	20	35	1.96
46508705--46509109	195	2.1	192	84	4	528	26	21	20	31	1.98
46508897--46509259	156	2.3	156	81	4	403	26	22	20	30	1.98
46509005--46509088	40	2.1	40	86	0	114	21	22	23	32	1.98
46509000--46509479	196	2.5	196	82	3	540	24	21	22	31	1.98
46509141--46509301	80	2.0	81	80	3	182	23	21	21	34	1.97
46508585--46509454	351	2.5	346	83	5	1090	26	21	20	31	1.98
46509350--46509480	40	3.3	39	73	10	122	19	19	25	35	1.96
46511723--46511793	37	1.9	37	82	5	90	40	0	2	56	1.14
46511747--46511803	29	2.0	29	86	6	80	43	0	3	52	1.18
46511862--46511931	31	2.2	32	85	12	92	41	0	7	51	1.29
46511869--46511931	33	1.9	33	87	12	94	42	0	6	50	1.27
46512017--46512052	18	1.9	19	88	5	56	41	0	5	52	1.24
46515054--46515111	29	2.0	29	80	12	66	31	1	25	41	1.66
46515554--46515590	19	2.0	19	89	5	58	43	0	18	37	1.51
46517697--46517722	12	2.2	12	100	0	52	7	15	30	46	1.74
46517868--46518233	41	8.9	41	88	0	507	19	23	29	27	1.98
46517873--46518233	165	2.2	163	87	2	524	19	23	28	27	1.98
46518345--46518395	22	2.3	20	78	18	57	47	5	3	43	1.46
46518869--46518973	7	15.0	7	79	9	90	18	1	41	38	1.61
46518905--46518987	36	2.3	35	83	6	96	24	2	33	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46519668--46519739	29	2.5	30	71	15	69	31	0	31	36	1.58
46524332--46524547	86	2.5	86	81	4	215	24	18	28	28	1.98
46524366--46524574	43	4.9	42	81	5	195	26	19	26	27	1.99
46524645--46524687	22	2.0	22	90	0	68	41	25	20	11	1.86
46535481--46535665	43	4.3	43	85	2	244	30	27	16	25	1.97
46535460--46535665	87	2.4	87	85	3	254	29	25	17	27	1.97
46536071--46536161	43	2.1	42	86	4	128	45	9	9	35	1.71
46536498--46536795	148	2.0	150	94	1	519	35	18	15	30	1.92
46545114--46545155	22	1.9	22	85	9	59	57	4	35	2	1.33
46550504--46550925	44	9.2	44	69	18	220	32	18	21	27	1.96
46550506--46550932	142	3.0	141	93	1	703	32	18	21	27	1.97
46550692--46550873	98	1.9	97	80	6	215	32	18	20	28	1.96
46557029--46557076	14	3.4	14	77	5	51	50	29	2	18	1.59
46557101--46557145	14	3.2	14	80	0	54	46	31	0	22	1.52
46557781--46558014	41	5.7	41	84	2	299	29	28	17	24	1.97
46557791--46558014	123	1.8	124	88	2	344	30	29	17	23	1.97
46567718--46567783	20	3.5	20	72	19	70	33	16	7	42	1.77
46573837--46573891	25	2.2	25	84	9	69	52	1	0	45	1.11
46574007--46574174	47	3.7	46	71	18	143	48	3	2	45	1.35
46574066--46574209	44	3.2	43	70	19	132	49	2	2	45	1.28
46574041--46574208	91	1.8	91	93	0	291	47	2	2	46	1.33
46575290--46575379	45	2.0	45	95	0	162	25	32	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46580664--46580703	22	1.9	19	85	14	53	47	2	0	50	1.14
46580892--46580922	16	1.9	16	100	0	62	19	6	35	38	1.77
46582644--46582712	34	2.0	34	97	0	129	36	13	17	33	1.88
46583874--46583901	5	5.6	5	100	0	56	82	0	17	0	0.68
46595209--46595326	43	2.8	43	79	6	150	33	27	16	23	1.96
46597158--46597211	21	2.6	21	84	0	81	38	1	0	59	1.08
46597313--46597395	12	6.8	12	74	16	55	54	3	2	39	1.31
46597356--46597384	15	1.9	15	100	0	58	55	3	0	41	1.17
46597379--46597440	22	2.9	21	81	11	72	58	1	0	40	1.08
46597524--46597611	39	2.4	37	80	15	103	56	0	2	40	1.11
46597511--46597611	20	4.9	21	73	20	97	56	0	2	40	1.14
46597626--46597697	24	3.0	24	75	18	69	72	5	4	18	1.21
46597640--46597720	8	9.1	8	73	16	54	74	3	4	17	1.15
46597664--46597714	25	2.1	24	85	7	68	76	3	1	17	1.03
46598142--46598288	72	2.0	72	97	0	276	43	19	17	20	1.88
46598579--46598884	153	2.0	153	99	0	603	27	22	20	29	1.99
46603631--46603688	20	2.8	20	70	15	55	34	3	10	51	1.53
46610988--46611067	18	4.3	18	65	30	51	47	1	1	50	1.17
46610992--46611207	28	7.5	27	67	19	100	44	3	2	50	1.31
46611094--46611284	61	3.2	60	69	12	167	43	3	4	48	1.41
46611004--46611319	120	2.6	119	92	3	510	44	3	3	48	1.35
46611265--46611299	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46611456--46611553	45	2.2	45	87	5	137	35	27	5	31	1.79
46616396--46616500	53	2.0	52	96	0	183	26	11	32	28	1.91
46618861--46618891	16	2.0	16	93	6	55	35	0	0	64	0.94
46624956--46625010	26	2.1	26	100	0	110	32	21	10	34	1.89
46633314--46633347	15	2.2	16	89	5	52	38	0	5	55	1.24
46634154--46634185	15	2.1	15	94	0	55	68	3	0	28	1.04
46652745--46652805	26	2.4	26	88	2	88	27	13	18	40	1.87
46656742--46656795	21	2.5	20	85	11	72	33	14	0	51	1.43
46656825--46656863	19	2.0	19	90	5	60	25	7	0	66	1.18
46658374--46658411	9	4.2	9	89	0	58	50	13	7	28	1.69
46662807--46662840	13	2.5	14	85	9	52	38	20	8	32	1.84
46663637--46663666	16	1.9	15	93	6	51	50	10	0	40	1.36
46666326--46666383	15	4.0	15	77	16	52	68	3	1	25	1.14
46667810--46667847	9	4.2	9	96	0	67	65	10	10	13	1.47
46671514--46671556	22	2.0	22	90	0	68	9	13	27	48	1.73
46671628--46671897	42	6.4	42	82	5	287	30	20	21	27	1.98
46671647--46671893	127	2.0	126	83	7	313	31	19	22	26	1.97
46672316--46672355	12	3.3	12	82	0	53	2	35	17	45	1.62
46672348--46672387	21	1.9	21	89	0	62	2	45	22	30	1.66
46677889--46677935	7	6.1	7	90	9	58	29	0	17	53	1.44
46677896--46678261	9	41.4	9	74	10	231	33	3	14	47	1.62
46677997--46678268	36	7.8	35	81	10	310	34	1	13	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46677997--46678247	63	3.8	63	86	9	367	34	1	13	50	1.53
46681276--46681310	14	2.4	15	90	4	54	42	37	0	20	1.52
46682144--46682182	21	1.9	20	89	5	60	43	35	0	20	1.52
46682242--46682779	115	4.7	114	72	9	321	26	23	19	30	1.98
46682388--46682854	228	2.0	226	78	9	475	26	23	19	29	1.98
46682902--46683138	113	2.1	112	79	7	257	26	21	19	32	1.97
46685050--46685175	41	3.1	41	85	4	130	28	24	16	30	1.97
46691648--46691676	14	2.1	14	100	0	58	41	13	13	31	1.84
46691809--46691898	34	2.8	31	79	14	94	41	14	8	35	1.77
46692103--46692228	41	3.1	41	83	4	139	28	23	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161