genome.fa.s22.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  67  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20884351--20884396	21	2.2	20	81	11	56	39	8	34	17	1.80
20888753--20888788	18	2.0	18	88	0	54	27	16	22	33	1.95
20888985--20889011	13	2.1	13	100	0	54	51	14	7	25	1.68
20889466--20889518	9	5.7	9	83	16	72	24	11	18	45	1.82
20889466--20889528	9	6.7	10	81	16	57	25	9	17	47	1.77
20889472--20889528	29	2.0	29	86	6	80	24	10	19	45	1.81
20889466--20889527	18	3.3	20	84	10	87	25	9	17	46	1.79
20893423--20893488	33	2.0	33	85	5	89	40	0	25	33	1.56
20896583--20896665	20	4.2	20	74	11	71	42	16	28	12	1.84
20900559--20900734	84	2.0	87	88	6	261	25	22	7	44	1.79
20904787--20904839	14	4.0	13	77	20	56	49	13	13	24	1.77
20912730--20912969	102	2.4	102	92	1	401	29	15	26	28	1.96
20912730--20913017	51	5.7	50	74	6	238	29	16	26	28	1.97
20912737--20913056	102	3.1	102	85	2	268	30	15	25	28	1.95
20915161--20915218	25	2.3	25	93	0	98	18	6	37	36	1.78
20935654--20935713	22	2.7	22	94	0	102	48	15	18	18	1.81
20935719--20935758	11	3.8	11	75	24	50	47	15	5	32	1.66
20935654--20935769	22	5.8	20	72	13	62	47	14	13	24	1.81
20936198--20936222	12	2.1	12	100	0	50	24	36	24	16	1.94
20936382--20936465	9	9.4	9	84	2	107	34	25	8	32	1.85
20936382--20936465	18	4.7	18	91	2	125	34	25	8	32	1.85
20936382--20936465	35	2.4	36	89	2	125	34	25	8	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20936480--20936574	37	2.6	37	86	3	131	47	13	5	33	1.66
20936745--20936769	7	3.6	7	100	0	50	52	16	16	16	1.76
20936825--20936876	7	7.3	7	78	4	59	51	13	17	17	1.76
20938463--20938613	79	2.0	75	89	5	230	32	13	5	47	1.67
20939334--20939364	12	2.6	12	94	0	53	29	16	38	16	1.90
20941076--20941187	13	8.7	13	80	12	115	35	6	17	40	1.75
20941076--20941169	38	2.5	38	94	0	161	35	6	15	42	1.73
20941076--20941187	25	4.4	26	80	11	124	35	6	17	40	1.75
20944597--20944666	20	3.2	20	69	30	63	54	10	8	27	1.63
20944576--20944666	45	2.0	45	100	0	182	53	10	6	28	1.61
20944578--20944650	20	3.2	24	68	31	77	54	12	5	27	1.59
20947233--20947396	72	2.3	72	85	4	215	23	5	14	57	1.58
20949435--20949485	13	3.9	13	86	0	75	33	23	9	33	1.88
20949435--20949485	26	2.0	26	92	0	84	33	23	9	33	1.88
20950283--20950331	17	2.7	18	78	15	57	42	0	0	57	0.99
20950283--20950331	9	5.6	9	80	9	57	42	0	0	57	0.99
20950283--20950345	26	2.5	24	78	14	72	41	0	1	57	1.08
20950744--20950783	21	2.0	21	90	5	64	42	0	15	42	1.46
20953822--20953924	38	2.7	38	77	17	113	15	17	27	39	1.90
20956782--20956819	17	2.2	18	90	4	60	18	0	0	81	0.69
20956774--20956820	12	3.8	12	76	23	53	19	0	0	80	0.70
20956774--20956819	24	2.0	24	91	4	76	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20961547--20961592	6	7.7	6	90	0	56	67	8	6	17	1.39
20961589--20961620	9	3.6	9	95	0	55	87	0	9	3	0.64
20962466--20962507	7	6.0	7	83	10	59	69	0	16	14	1.20
20962459--20962515	15	3.9	15	82	13	75	68	0	15	15	1.22
20962468--20962515	21	2.3	21	88	0	69	70	0	14	14	1.16
20963929--20964349	44	9.6	44	69	10	200	30	18	21	30	1.97
20963794--20964349	175	3.2	175	90	0	871	30	18	21	29	1.97
20963897--20964382	90	5.5	89	71	13	412	31	18	20	29	1.96
20964369--20964913	100	5.4	100	86	2	682	31	23	21	22	1.98
20964398--20964857	50	9.2	50	69	3	289	32	23	21	22	1.98
20966431--20966492	24	2.6	24	82	5	72	25	4	0	69	1.08
20966480--20966509	7	4.4	7	91	8	53	13	0	0	86	0.57
20966455--20966508	24	2.2	25	86	3	74	22	0	0	77	0.76
20968850--20968931	33	2.5	33	96	4	148	21	23	19	35	1.96
20978058--20978147	23	3.8	23	79	8	92	53	10	6	30	1.60
20978166--20978204	12	3.2	13	82	10	55	64	2	5	28	1.28
20979734--20980233	89	5.6	88	75	7	431	32	22	14	30	1.94
20979734--20980237	44	11.4	44	77	6	387	32	22	14	30	1.94
20979734--20980237	133	3.8	133	86	2	602	32	22	14	30	1.94
20981486--20981542	17	3.3	16	77	15	51	14	15	0	70	1.18
20981484--20981541	26	2.3	25	82	8	64	15	17	0	67	1.24
20982481--20982520	18	2.2	18	86	0	53	62	10	15	12	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20984414--20984459	19	2.4	19	85	7	58	47	8	19	23	1.77
20986413--20986488	23	3.1	23	76	14	73	48	7	9	34	1.64
20986517--20986560	18	2.4	18	88	0	61	59	0	6	34	1.24
21003272--21003374	52	2.0	52	98	0	197	36	16	23	23	1.94
21011126--21011217	40	2.3	40	88	0	130	40	9	27	22	1.85
21011284--21011430	47	3.1	48	78	7	122	22	27	6	44	1.76
21016270--21016305	16	2.2	16	90	0	54	30	33	2	33	1.72
21018591--21018654	28	2.3	28	91	0	101	20	18	17	43	1.88
21026072--21026524	227	2.0	227	98	0	870	29	26	22	21	1.99
21029547--21029626	24	3.5	24	66	29	66	52	20	3	23	1.62
21029544--21029629	43	2.0	43	100	0	172	51	20	4	23	1.66
21031108--21031174	21	3.2	21	67	28	54	35	8	11	43	1.73
21035882--21035923	15	2.9	15	82	10	52	47	0	0	52	1.00
21036057--21036166	45	2.6	43	79	11	120	32	29	5	32	1.80
21036147--21036214	16	4.2	16	94	0	118	35	36	0	27	1.58
21036147--21036214	32	2.1	32	100	0	136	35	36	0	27	1.58
21040049--21040084	14	2.5	15	90	4	56	41	0	0	58	0.98
21046949--21046992	23	1.9	23	81	9	54	63	11	2	22	1.38
21048639--21048695	19	3.2	18	78	14	55	8	14	0	77	0.99
21048639--21048695	9	6.3	9	80	6	53	8	14	0	77	0.99
21050285--21050421	51	2.7	50	79	11	131	47	5	19	27	1.70
21050394--21050447	6	8.5	6	90	8	72	62	0	16	20	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21054598--21054643	21	2.2	21	96	0	83	32	17	26	23	1.97
21054706--21054739	5	6.4	5	87	12	50	79	0	0	20	0.73
21054705--21054738	17	2.0	17	100	0	68	76	0	0	23	0.79
21054852--21055148	113	2.7	110	76	7	285	39	24	11	25	1.88
21056589--21056628	21	1.9	21	85	10	55	40	27	5	27	1.77
21060229--21060294	33	2.1	31	86	8	89	65	9	10	15	1.47
21061627--21061731	27	3.9	27	81	5	104	24	13	18	43	1.85
21061643--21061827	81	2.3	81	82	5	223	22	14	18	44	1.86
21061643--21061840	27	7.3	27	77	6	170	22	15	18	43	1.87
21061643--21061864	54	4.1	52	79	6	169	22	13	18	45	1.85
21061643--21061864	81	2.7	81	78	6	202	22	13	18	45	1.85
21075973--21076092	36	3.3	36	86	0	168	38	38	10	13	1.78
21078507--21078541	18	2.1	16	89	10	52	51	2	5	40	1.40
21085805--21085853	18	2.7	18	81	9	64	44	0	14	40	1.45
21086418--21086460	13	3.5	13	75	18	56	37	0	13	48	1.43
21086411--21086460	23	2.2	23	96	3	93	38	0	12	50	1.40
21087300--21087357	22	2.6	23	81	15	68	24	1	1	72	1.03
21092917--21093128	81	2.6	81	78	8	234	40	20	17	21	1.91
21092917--21093101	27	6.9	27	83	4	212	41	21	17	20	1.90
21092917--21093099	54	3.4	54	83	4	235	42	21	16	19	1.90
21097498--21097549	23	2.3	23	89	0	77	36	0	13	50	1.42
21098427--21098476	26	1.9	26	88	8	75	22	4	0	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21102987--21103086	39	2.6	39	83	1	121	51	8	4	37	1.50
21103838--21103923	43	2.0	43	95	0	154	41	13	13	30	1.84
21105614--21105646	15	2.1	16	88	5	50	36	6	6	51	1.51
21106991--21107034	7	6.3	7	84	10	63	38	0	15	45	1.47
21106979--21107034	29	2.0	28	89	3	85	33	3	17	44	1.66
21106992--21107035	22	2.0	22	91	8	72	36	0	18	45	1.49
21107727--21107985	35	7.7	33	84	6	290	19	22	17	40	1.92
21107722--21107985	102	2.6	102	87	3	374	19	22	17	40	1.91
21107722--21107995	67	4.0	67	85	6	320	19	21	17	41	1.90
21110795--21110839	20	2.1	22	84	12	58	13	11	8	66	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161