genome.fa.s22.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  4  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043734--1044297	88	6.4	88	91	0	889	29	22	23	24	1.99
1043741--1044297	175	3.2	176	90	0	884	29	22	23	24	1.99
1043741--1044297	263	2.1	263	90	0	882	29	22	23	24	1.99
1044297--1044635	89	3.8	88	84	0	399	29	26	22	20	1.99
1044356--1044618	45	5.9	43	70	11	129	28	27	23	20	1.99
1044407--1044630	45	5.0	45	71	10	147	28	27	23	20	1.99
1044900--1045928	129	8.0	129	87	0	1425	32	20	20	26	1.97
1044951--1045830	85	10.3	83	66	12	341	32	20	20	26	1.97
1046265--1046316	24	2.1	26	85	7	72	76	9	1	11	1.09
1054578--1054629	23	2.2	25	83	13	65	50	3	1	44	1.31
1055852--1055879	3	9.3	3	100	0	56	35	0	0	64	0.94
1060129--1060228	8	11.2	8	70	16	56	49	2	1	48	1.19
1060084--1060145	20	3.1	19	73	13	61	53	0	3	43	1.17
1060130--1060268	9	14.9	9	69	16	52	46	2	0	50	1.21
1060088--1060227	9	14.9	9	73	15	70	50	1	2	45	1.22
1060212--1060272	20	3.0	20	69	4	59	44	3	0	52	1.17
1062520--1062562	18	2.5	17	81	7	52	60	2	0	37	1.10
1062670--1062732	20	3.3	20	62	20	53	33	23	19	23	1.97
1063392--1063555	87	1.9	84	85	7	224	39	9	12	39	1.75
1067238--1067286	22	2.2	22	77	0	53	59	0	18	22	1.38
1067815--1067852	5	7.2	5	88	11	58	42	0	18	39	1.50
1067815--1067852	11	3.5	11	96	3	69	42	0	18	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068316--1068382	26	2.5	26	76	7	73	23	20	17	37	1.94
1069914--1069944	16	2.0	15	93	6	53	19	0	16	64	1.29
1071338--1071461	50	2.5	50	78	0	122	29	23	26	20	1.99
1071733--1071771	20	2.0	20	90	10	62	58	7	17	15	1.59
1075952--1075995	18	2.3	19	84	7	54	36	2	0	61	1.09
1078025--1078209	79	2.3	81	83	9	229	24	22	27	25	2.00
1078026--1078209	40	4.6	39	81	11	189	25	22	27	25	2.00
1078026--1078242	79	2.7	79	80	9	194	26	22	27	24	2.00
1097024--1097143	63	2.0	59	85	6	159	50	15	10	24	1.75
1105557--1105667	45	2.5	45	86	0	150	41	17	16	25	1.89
1105730--1105794	34	1.9	34	83	0	85	44	18	16	20	1.87
1112557--1112744	51	3.7	51	84	2	218	29	28	16	25	1.97
1112557--1112744	101	1.9	101	82	3	243	29	28	16	25	1.97
1123145--1123329	40	4.6	39	81	5	185	24	22	27	24	2.00
1123145--1123329	79	2.3	80	81	7	207	24	22	27	24	2.00
1123198--1123362	79	2.1	79	80	8	176	27	21	27	24	1.99
1129113--1129514	200	2.0	200	98	0	768	26	20	21	31	1.98
1131294--1131518	119	1.9	120	82	8	289	25	21	27	25	2.00
1131294--1131518	40	5.7	40	86	5	271	25	21	27	25	2.00
1131301--1131551	79	3.2	79	80	10	262	27	20	26	25	1.99
1133180--1133223	22	1.9	22	86	9	61	38	15	2	43	1.60
1134019--1134095	40	1.9	39	82	10	93	32	24	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1136068--1136137	25	2.8	24	78	8	79	25	22	24	27	2.00
1136259--1136295	19	1.9	20	94	5	67	54	18	0	27	1.44
1140624--1140670	22	2.1	22	96	0	85	23	10	25	40	1.87
1148099--1148370	50	5.4	49	86	4	348	22	29	20	27	1.98
1153644--1153845	39	5.2	39	90	4	286	25	22	28	23	1.99
1167504--1167688	79	2.3	82	84	7	238	25	27	22	24	2.00
1167485--1167688	40	5.1	40	82	8	238	25	27	22	25	2.00
1189395--1189572	27	6.6	27	82	3	178	29	28	15	26	1.96
1189416--1189571	82	1.9	81	89	3	242	28	28	16	26	1.97
1192557--1192737	60	3.0	60	98	0	353	39	8	22	29	1.83
1194302--1194477	88	2.0	88	88	0	262	23	11	23	40	1.87
1234925--1234961	19	1.9	19	100	0	74	29	16	10	43	1.82
1240216--1240274	20	3.0	20	76	0	64	42	16	5	35	1.71
1240458--1240581	23	5.3	22	72	14	81	33	18	25	22	1.97
1240526--1240581	26	2.2	26	84	6	71	32	17	26	23	1.97
1240728--1241444	67	10.8	67	89	1	1082	42	18	2	36	1.63
1240728--1241444	200	3.6	201	89	1	1100	42	18	2	36	1.63
1240728--1241449	133	5.4	134	94	0	1182	42	18	2	36	1.63
1244299--1244430	28	4.8	28	87	0	194	28	24	22	24	1.99
1244541--1244641	26	3.9	26	89	0	148	36	24	20	17	1.94
1244811--1245088	27	10.3	27	73	10	185	21	17	19	40	1.91
1244811--1245088	54	5.2	53	72	15	212	21	17	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254636--1254813	27	6.6	27	83	3	205	26	15	28	29	1.96
1254637--1254792	82	1.9	81	88	3	233	26	15	28	29	1.96
1254633--1254813	82	2.2	81	83	2	229	27	15	27	29	1.96
1254774--1254988	108	2.0	108	99	0	421	27	19	24	28	1.98
1264850--1264928	40	2.0	40	92	0	131	44	10	18	26	1.82
1271185--1271369	79	2.3	82	82	7	220	25	27	22	24	2.00
1271166--1271369	40	5.1	40	80	8	220	25	27	22	25	2.00
1274358--1274425	34	2.0	34	100	0	136	35	20	14	29	1.93
1276210--1276417	45	4.6	44	76	9	170	24	19	15	40	1.91
1282674--1282713	3	13.3	3	89	10	64	65	0	0	35	0.93
1283139--1283183	22	2.0	22	86	4	63	37	17	6	37	1.76
1283155--1283206	19	2.9	17	83	10	68	32	19	11	36	1.87
1284044--1284360	126	2.4	131	86	4	448	28	26	17	27	1.97
1284038--1284414	44	8.7	44	79	6	394	29	26	17	27	1.97
1284391--1284900	88	5.8	88	87	0	644	21	23	27	26	1.99
1287610--1287872	40	6.6	40	88	3	325	24	20	27	26	1.99
1287649--1287907	80	3.3	80	85	3	256	25	20	27	25	1.99
1295562--1295824	40	6.6	40	88	3	325	24	20	27	26	1.99
1295601--1295859	80	3.3	80	85	3	256	25	20	27	25	1.99
1314875--1315022	64	2.3	64	83	1	181	25	13	16	45	1.83
1318131--1318354	79	2.8	79	85	6	292	25	27	22	24	2.00
1318131--1318354	40	5.7	40	87	6	280	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1338098--1338237	35	3.9	34	70	14	100	33	24	19	22	1.97
1338147--1338275	40	3.3	40	69	14	117	37	20	20	21	1.95
1338098--1338312	75	2.9	75	88	2	308	33	23	20	22	1.97
1338345--1338384	20	2.0	21	95	5	73	35	25	2	37	1.69
1338372--1338445	36	2.0	37	94	2	132	37	22	0	39	1.55
1340601--1340627	14	1.9	14	100	0	54	14	14	37	33	1.88
1344605--1344641	17	2.1	18	90	5	58	27	10	32	29	1.90
1345873--1345897	6	4.2	6	100	0	50	16	0	0	84	0.63
1350225--1350253	10	2.9	10	100	0	58	10	10	6	72	1.28
1352656--1352713	25	2.3	25	81	0	71	31	22	24	22	1.99
1352692--1352848	25	6.3	24	73	8	91	35	21	26	17	1.95
1352692--1352848	24	6.3	25	70	12	92	35	21	26	17	1.95
1352930--1353000	25	2.8	25	84	0	79	33	18	29	18	1.95
1358968--1359062	35	2.7	35	96	3	174	42	30	9	17	1.81
1376507--1376611	35	3.0	35	67	15	81	23	21	21	32	1.98
1380877--1380927	19	2.8	18	80	8	59	64	1	5	27	1.27
1380872--1380933	25	2.5	24	80	10	63	61	3	4	30	1.33
1390325--1390502	27	6.6	27	83	3	205	26	15	28	29	1.96
1390326--1390481	82	1.9	81	88	3	233	26	15	28	29	1.96
1390322--1390502	82	2.2	81	83	2	229	27	15	27	29	1.96
1390407--1390513	27	3.9	27	85	1	70	26	14	28	30	1.95
1393427--1393535	44	2.5	44	86	3	148	29	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1393231--1393942	233	3.1	230	85	6	913	28	22	18	30	1.98
1393570--1393988	217	1.9	217	91	0	678	27	23	19	29	1.98
1393646--1393950	44	7.0	44	70	8	149	27	25	19	28	1.98
1393982--1394348	128	2.9	128	95	0	637	23	25	19	31	1.98
1394335--1394547	44	4.8	44	93	0	354	20	23	23	32	1.98
1396566--1396590	7	3.6	7	100	0	50	0	28	0	72	0.86
1396578--1396653	24	3.1	24	69	17	66	7	14	5	72	1.25
1396646--1396681	6	5.7	6	93	6	54	19	0	13	66	1.24
1405957--1406152	67	2.9	68	80	5	182	23	21	19	34	1.96
1409003--1409135	45	3.0	45	77	2	133	23	19	15	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161