genome.fa.s22.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  140  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43591748--43591782	16	2.1	16	89	10	52	48	0	0	51	1.00
43596474--43596511	19	2.0	19	85	10	51	76	2	7	13	1.11
43598153--43598289	58	2.4	58	81	4	170	52	4	0	42	1.26
43610263--43610303	21	1.9	21	85	5	55	29	2	7	60	1.36
43616966--43617001	15	2.5	14	86	8	54	44	8	0	47	1.33
43617269--43617298	15	2.0	15	100	0	60	6	6	20	66	1.38
43618147--43618356	69	3.0	69	84	3	235	30	23	17	29	1.97
43618324--43618693	104	3.6	104	84	4	471	29	22	19	27	1.98
43618326--43618744	104	4.0	103	83	4	470	29	22	19	28	1.98
43618336--43618712	207	1.8	206	85	3	533	29	21	19	29	1.98
43621599--43621628	13	2.4	13	94	5	53	20	0	0	80	0.72
43621820--43621884	8	7.9	8	76	6	67	15	4	12	67	1.37
43623887--43623929	18	2.4	18	88	7	61	53	0	0	46	1.00
43636204--43636236	3	11.3	3	93	6	59	69	0	30	0	0.88
43641161--43641348	50	3.6	50	88	4	259	21	30	22	24	1.99
43641427--43641458	13	2.5	13	94	0	55	56	12	0	31	1.37
43641670--43641727	30	1.9	30	89	0	89	31	24	3	41	1.71
43652992--43653027	17	2.1	18	89	5	56	55	0	0	44	0.99
43653682--43653749	30	2.3	30	90	5	104	42	8	0	48	1.34
43653818--43653883	27	2.4	27	89	0	105	30	28	25	15	1.96
43654121--43654145	3	8.3	3	100	0	50	32	0	0	68	0.90
43657896--43657931	17	2.1	18	89	5	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43659186--43659273	18	4.6	18	80	17	70	28	7	2	61	1.36
43659791--43659853	5	11.5	6	81	9	57	25	14	1	58	1.45
43659795--43659843	17	2.9	17	84	6	64	26	14	2	57	1.48
43659844--43659918	21	3.6	21	84	10	100	28	9	0	62	1.26
43659907--43660155	27	10.0	26	71	17	172	22	16	0	60	1.40
43659839--43659999	47	3.6	43	80	12	171	24	13	0	62	1.31
43659846--43659980	21	6.1	22	68	18	66	23	14	0	62	1.32
43659907--43660065	74	2.1	75	87	1	221	24	15	0	59	1.41
43659866--43660167	122	2.5	121	90	4	464	23	14	0	61	1.38
43660036--43660109	20	3.3	21	68	23	60	22	18	0	58	1.40
43659981--43660112	48	2.8	47	87	5	185	24	15	0	59	1.40
43660110--43660183	21	3.5	20	77	14	69	21	10	1	66	1.30
43663152--43663356	114	1.8	113	83	6	272	33	19	18	28	1.95
43674096--43674134	17	2.6	14	84	15	51	66	2	17	12	1.35
43674098--43674135	15	2.4	17	91	8	62	68	2	15	13	1.32
43674578--43674602	3	8.3	3	100	0	50	32	0	0	68	0.90
43680865--43680895	6	5.3	6	92	7	55	51	0	0	48	1.00
43682047--43682086	18	2.3	17	86	4	53	35	0	7	57	1.27
43686953--43687009	3	19.0	3	88	0	87	31	0	3	64	1.10
43690615--43690665	21	2.5	22	81	12	72	62	0	0	37	0.95
43690647--43690683	17	2.1	18	90	5	58	67	0	0	32	0.91
43717968--43718022	23	2.4	23	96	0	101	40	12	23	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43718450--43718474	6	4.2	6	100	0	50	32	32	20	16	1.94
43722368--43722434	35	1.9	35	100	0	134	16	11	7	64	1.48
43725579--43725689	55	2.0	55	98	0	213	20	19	10	48	1.79
43747526--43747590	20	3.5	20	66	23	59	43	21	24	10	1.84
43747518--43747591	36	2.1	36	97	0	139	44	18	27	9	1.81
43753246--43754269	511	2.0	511	96	0	1904	33	17	20	29	1.95
43759932--43759961	15	2.0	15	93	0	51	43	10	6	40	1.64
43762910--43763005	44	2.2	45	86	3	133	35	20	9	34	1.85
43767152--43767203	21	2.6	20	87	6	79	38	9	15	36	1.80
43768704--43768863	71	2.3	71	94	0	275	30	14	16	38	1.89
43770615--43770678	21	2.9	21	86	6	83	70	1	1	26	1.05
43770612--43770980	26	14.6	25	69	13	170	62	4	5	27	1.34
43770655--43770879	101	2.2	104	80	7	255	62	4	5	27	1.38
43770818--43770878	28	2.2	27	80	14	70	60	4	6	27	1.42
43770925--43770958	16	2.1	16	88	0	50	70	0	0	29	0.87
43772393--43772417	2	12.5	2	100	0	50	52	0	0	48	1.00
43774761--43774811	25	2.0	25	96	0	93	47	21	11	19	1.81
43775347--43775375	2	14.5	2	100	0	58	0	0	48	51	1.00
43782113--43782137	13	1.9	13	100	0	50	8	24	4	64	1.38
43782910--43782942	3	11.0	3	100	0	66	0	66	33	0	0.92
43784133--43784268	71	1.9	71	96	0	254	22	13	39	25	1.90
43784244--43784298	21	2.6	21	91	0	92	23	9	40	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43792944--43792980	13	2.6	14	91	8	58	75	0	0	24	0.80
43793242--43793423	92	2.0	92	84	2	240	39	12	15	32	1.85
43805030--43805054	11	2.3	11	100	0	50	52	16	16	16	1.76
43833645--43833718	38	1.9	38	100	0	148	37	12	13	36	1.82
43837839--43837872	1	34.0	1	87	0	50	0	0	5	94	0.32
43851886--43851913	9	3.1	9	100	0	56	32	0	10	57	1.33
43852199--43852266	31	2.2	30	82	7	82	51	7	11	29	1.65
43854332--43854389	28	2.1	28	100	0	116	31	13	15	39	1.86
43858646--43858702	29	2.0	29	89	0	87	50	0	1	47	1.11
43858641--43858709	29	2.3	30	82	5	86	53	1	1	43	1.18
43861041--43861082	22	1.9	22	85	0	57	14	16	26	42	1.86
43861173--43861259	43	2.0	43	88	0	129	35	26	17	20	1.95
43864564--43864608	23	2.0	23	82	8	56	33	4	11	51	1.58
43865184--43865368	41	4.5	42	84	5	191	28	19	23	28	1.98
43865184--43865325	42	3.4	41	87	4	187	28	19	23	28	1.98
43871155--43871209	21	2.6	21	91	0	92	21	9	40	29	1.84
43878970--43879014	23	2.0	23	82	8	56	33	4	11	51	1.58
43882358--43882426	16	4.2	16	96	3	129	26	0	36	37	1.57
43882358--43882426	33	2.1	32	97	2	129	26	0	36	37	1.57
43882407--43882497	45	2.0	45	85	2	121	27	6	28	37	1.82
43882491--43882845	177	2.0	177	98	0	683	43	5	11	39	1.65
43882819--43882860	15	2.7	16	82	14	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43882828--43882869	15	2.9	15	82	10	52	52	0	0	47	1.00
43886530--43886564	6	5.8	6	100	0	70	31	0	68	0	0.90
43887395--43887464	21	3.3	21	82	4	79	35	40	0	24	1.56
43887785--43887814	15	2.0	15	93	0	51	43	36	0	20	1.52
43887832--43887877	7	6.4	7	82	2	56	43	36	0	19	1.51
43888051--43888225	41	4.3	40	79	5	172	30	24	20	24	1.99
43888051--43888225	82	2.1	82	82	0	206	30	24	20	24	1.99
43892929--43892997	29	2.3	29	85	9	86	44	14	15	24	1.84
43893607--43893647	21	2.0	21	85	4	57	41	0	0	58	0.98
43893813--43893885	28	2.6	29	78	10	78	50	2	1	45	1.24
43901525--43901556	14	2.3	14	100	0	64	75	0	0	25	0.81
43901535--43901747	68	3.1	68	97	0	399	47	9	6	36	1.62
43901735--43901778	9	5.1	9	78	10	56	52	11	0	36	1.38
43901851--43901892	16	2.6	16	92	0	66	42	7	2	47	1.43
43901866--43901926	23	2.7	23	82	2	70	47	1	1	49	1.21
43902562--43902616	26	2.1	26	100	0	110	38	10	18	32	1.85
43902979--43903022	17	2.6	17	80	16	56	47	2	6	43	1.42
43904689--43904732	20	2.2	20	100	0	88	25	29	13	31	1.94
43906719--43906808	28	3.2	28	82	6	119	28	18	27	24	1.98
43907132--43907206	27	2.8	27	82	6	64	25	14	20	40	1.90
43907147--43907241	27	3.6	26	84	4	118	16	20	20	43	1.88
43914691--43914716	13	2.0	13	100	0	52	53	23	0	23	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43920607--43920656	22	2.3	22	86	6	66	24	46	10	20	1.81
43921577--43921601	8	3.1	8	100	0	50	64	0	12	24	1.27
43921667--43921714	25	1.9	25	95	0	87	41	4	8	45	1.53
43921785--43921818	16	2.1	16	94	0	59	50	5	2	41	1.42
43925687--43925838	43	3.6	43	77	10	159	27	19	23	28	1.98
43928746--43928777	9	3.6	9	91	0	55	25	12	15	46	1.81
43928746--43928782	18	2.1	18	94	0	65	29	10	13	45	1.77
43939498--43939547	6	8.2	6	77	20	50	22	2	0	76	0.89
43939500--43939546	17	2.8	17	79	17	53	21	2	0	76	0.89
43944166--43944214	24	2.0	24	88	7	73	57	2	2	38	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161