genome.fa.s22.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  53  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16479505--16479544	21	1.9	21	94	0	71	2	45	17	35	1.62
16479438--16479605	87	1.9	87	89	4	259	13	31	16	38	1.87
16479510--16479555	21	2.2	21	92	0	74	2	41	19	36	1.64
16481129--16481222	47	2.0	47	89	0	143	32	22	14	29	1.94
16481878--16481912	12	2.8	12	91	4	52	22	2	42	31	1.68
16482224--16482255	16	2.0	16	100	0	64	25	12	6	56	1.59
16483571--16483622	25	2.0	26	85	3	70	50	21	3	25	1.65
16491953--16491991	20	2.0	19	85	5	51	46	5	23	25	1.73
16496619--16496660	22	1.9	22	100	0	84	9	28	7	54	1.59
16496619--16496668	22	2.3	22	92	0	82	8	28	8	56	1.57
16500245--16500348	49	2.1	49	94	0	181	31	7	10	50	1.65
16501735--16502936	120	10.0	120	95	1	2153	42	0	4	52	1.28
16502405--16502440	18	2.0	18	100	0	72	33	0	0	66	0.92
16502641--16502678	18	2.2	17	90	4	58	34	2	0	63	1.09
16502665--16502712	12	3.7	12	76	17	51	43	0	0	56	0.99
16503149--16503188	16	2.5	16	95	0	71	27	32	5	35	1.79
16521823--16521853	15	2.1	15	93	0	53	41	12	16	29	1.85
16523415--16523537	21	6.0	21	84	5	146	13	24	17	44	1.84
16523831--16523883	26	2.0	26	100	0	106	39	15	15	30	1.87
16528430--16528479	24	2.1	23	82	10	57	24	6	0	70	1.10
16538153--16538218	24	2.7	25	73	13	66	37	10	21	30	1.87
16545657--16545712	21	2.6	21	91	2	85	41	25	12	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16546784--16547191	61	6.7	61	100	0	816	60	14	16	8	1.57
16547191--16547391	100	2.0	100	100	0	402	55	15	16	11	1.69
16552959--16553138	50	3.6	49	77	10	154	28	21	27	22	1.99
16553341--16553389	20	2.5	20	75	15	57	59	6	22	12	1.55
16557172--16557200	11	2.7	11	94	5	51	75	0	0	24	0.80
16557680--16557730	23	2.2	23	89	6	77	31	9	17	41	1.82
16559205--16559232	14	2.0	14	100	0	56	14	21	21	42	1.88
16561214--16561251	14	2.7	14	84	8	51	2	31	0	65	1.06
16564945--16564991	6	7.8	6	88	9	69	17	29	0	53	1.44
16564944--16564989	24	1.9	24	95	0	83	17	30	0	52	1.45
16568631--16569418	2	394.0	2	100	0	1576	50	0	50	0	1.00
16572986--16573123	66	2.1	65	83	5	170	13	23	18	43	1.86
16575314--16576946	818	2.0	818	94	0	2858	35	16	14	32	1.90
16580025--16580054	7	4.4	7	95	4	53	56	0	0	43	0.99
16580422--16580455	13	2.5	14	90	9	61	70	0	0	29	0.87
16580501--16580543	13	3.1	14	83	16	54	65	4	2	27	1.25
16580501--16580575	26	2.9	26	69	23	68	62	4	2	30	1.27
16582996--16583037	18	2.3	18	87	0	57	50	0	38	11	1.40
16583014--16583115	44	2.3	44	86	0	141	43	7	30	18	1.79
16583078--16583131	22	2.4	22	75	9	56	44	7	18	29	1.77
16583175--16583346	41	4.2	41	83	2	186	20	20	21	36	1.95
16583175--16583348	82	2.1	81	83	5	208	20	21	21	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16583513--16583635	41	3.0	41	77	5	133	21	22	20	35	1.96
16583586--16583702	59	2.0	59	94	0	207	23	18	23	35	1.96
16590843--16590887	23	2.0	23	82	8	56	33	4	11	51	1.58
16597849--16597926	41	1.9	41	97	0	147	25	21	24	28	1.99
16598370--16598447	39	2.0	39	95	5	140	25	11	12	50	1.74
16598681--16598811	61	2.2	61	94	2	239	38	4	13	42	1.65
16601533--16601682	65	2.3	65	91	0	246	22	20	22	35	1.96
16601835--16601883	25	2.0	25	84	4	64	12	22	20	44	1.84
16603095--16603286	44	4.4	43	82	3	206	34	10	13	41	1.79
16603097--16603286	88	2.2	87	82	3	238	35	10	13	41	1.78
16605928--16605971	15	2.8	17	74	19	51	54	0	22	22	1.45
16614284--16614478	108	1.8	108	91	0	327	28	13	23	33	1.93
16620355--16620407	24	2.2	24	93	3	90	43	1	0	54	1.11
16622308--16622352	21	2.1	21	100	0	90	8	26	4	60	1.46
16629569--16629940	103	3.6	105	88	4	533	19	19	30	30	1.97
16645283--16645326	22	2.0	21	83	12	54	40	0	0	59	0.98
16655360--16655470	28	4.1	28	76	10	106	50	18	12	18	1.77
16656573--16656744	60	2.9	60	80	11	192	42	1	4	52	1.28
16656709--16656759	26	2.0	26	84	3	68	49	3	1	45	1.32
16658976--16659006	16	1.9	16	100	0	62	38	9	0	51	1.35
16663786--16663837	24	2.2	24	85	0	68	38	3	7	50	1.50
16663803--16663848	24	1.9	24	86	8	67	41	4	6	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16669430--16669470	3	13.3	3	89	5	64	2	31	0	65	1.05
16678319--16678370	24	2.2	24	85	0	68	36	5	9	48	1.60
16682038--16682091	20	2.7	20	88	0	72	46	0	31	22	1.52
16685064--16685095	12	2.6	13	85	14	50	56	6	0	37	1.25
16687439--16687780	44	7.8	44	89	2	429	24	24	20	30	1.99
16699101--16699313	46	4.7	46	94	2	385	34	14	21	30	1.93
16699101--16699313	90	2.3	91	95	1	383	34	14	21	30	1.93
16705357--16706234	433	2.0	433	96	0	1623	48	10	14	26	1.76
16716159--16716204	24	2.0	23	84	12	60	67	2	0	30	1.03
16725521--16725557	18	2.1	18	100	0	74	54	0	29	16	1.43
16738087--16738136	25	2.0	24	88	3	73	40	2	2	56	1.22
16738754--16738901	52	3.0	48	70	18	122	50	4	4	41	1.40
16742033--16742081	3	16.3	3	87	8	55	26	32	6	34	1.81
16742584--16743335	377	2.0	376	97	0	1405	34	16	15	32	1.91
16743846--16744020	72	2.4	73	83	6	239	54	13	6	26	1.62
16744444--16744509	18	3.7	18	97	0	123	39	12	13	34	1.82
16748549--16748631	19	4.1	19	77	17	85	51	20	25	2	1.59
16748559--16748681	25	5.2	25	77	11	141	49	23	24	2	1.62
16748549--16748656	44	2.5	44	89	0	162	51	22	24	1	1.57
16748656--16748704	19	2.6	19	83	3	64	48	18	26	6	1.71
16748559--16748698	69	2.0	69	88	0	208	50	22	24	2	1.63
16754306--16754367	20	3.3	18	75	18	63	64	8	3	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16755014--16755048	6	5.8	6	100	0	70	65	17	0	17	1.27
16755979--16756037	29	2.0	30	83	9	77	62	10	0	27	1.27
16756551--16756589	18	2.1	19	85	9	53	64	5	5	25	1.35
16756534--16756593	19	3.2	20	75	15	56	66	6	3	23	1.30
16757145--16757173	6	4.8	6	100	0	58	65	17	0	17	1.27
16757213--16757261	9	5.4	9	90	0	80	24	8	22	44	1.79
16757421--16757445	12	2.1	12	100	0	50	28	24	24	24	2.00
16757560--16757592	16	2.0	17	88	5	50	75	0	0	24	0.80
16758135--16758198	29	2.2	29	81	8	78	60	10	1	26	1.39
16762896--16762955	27	2.2	27	84	0	75	50	0	0	50	1.00
16765207--16765454	46	5.5	46	95	1	439	32	16	23	27	1.96
16772695--16772798	41	2.5	41	89	3	156	20	27	16	35	1.94
16779762--16779862	40	2.5	39	82	6	112	18	27	18	34	1.95
16779806--16779862	20	2.8	20	72	15	55	17	31	15	35	1.92
16788289--16788361	35	2.1	35	94	0	128	38	6	21	32	1.80
16793415--16793584	45	3.8	45	83	5	193	35	28	14	21	1.93
16807741--16807776	15	2.4	15	100	0	72	27	0	13	58	1.36
16809022--16809105	25	3.4	25	88	0	114	20	19	13	47	1.82
16813137--16813321	44	4.2	44	68	8	142	23	21	21	33	1.97
16813049--16813329	132	2.1	132	93	0	474	23	22	20	32	1.98
16835725--16837311	797	2.0	796	94	0	2811	29	17	17	35	1.93
16842059--16842094	6	6.0	6	100	0	72	66	0	16	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16847285--16847343	30	2.0	30	96	0	109	47	6	22	23	1.75
16847520--16847577	4	14.5	4	96	0	107	24	0	24	51	1.48
16851501--16851599	42	2.3	43	84	1	119	26	18	23	32	1.97
16859977--16860025	23	2.1	23	84	0	62	44	4	2	48	1.33
16861976--16862035	27	2.3	26	88	2	84	43	11	11	33	1.77
16866328--16866424	46	2.1	46	94	0	167	31	20	10	37	1.86
16868236--16868329	25	3.7	25	73	10	75	28	19	27	24	1.98
16872925--16873076	27	5.6	27	93	3	241	26	13	28	30	1.94
16872925--16873076	55	2.8	55	94	0	259	26	13	28	30	1.94
16876507--16876584	41	1.9	41	89	5	122	48	1	24	25	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161