genome.fa.s22.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  50  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15379128--15379230	53	1.9	53	94	0	179	40	3	6	48	1.48
15379479--15379504	7	3.7	7	100	0	52	57	15	0	26	1.38
15381936--15382051	61	1.9	58	87	5	169	50	3	3	43	1.36
15382031--15382089	30	2.0	30	83	6	75	47	5	3	44	1.42
15383379--15383408	15	2.0	15	93	0	51	50	0	0	50	1.00
15383375--15383427	26	2.0	26	85	7	72	49	1	0	49	1.12
15383378--15383435	26	2.2	26	81	6	64	51	1	1	44	1.21
15389733--15389775	18	2.3	18	84	11	52	18	0	30	51	1.47
15391022--15391079	25	2.6	20	72	25	53	36	41	6	15	1.74
15391023--15391074	25	2.1	25	100	0	104	34	40	7	17	1.78
15393046--15393105	24	2.6	22	76	19	61	60	10	0	30	1.30
15394010--15394144	68	2.0	68	85	1	180	48	4	4	42	1.43
15394122--15394154	17	2.0	17	88	5	50	48	0	0	51	1.00
15399064--15399227	50	3.0	53	76	16	165	23	28	18	29	1.98
15404290--15404358	23	3.1	23	85	8	81	46	20	21	11	1.82
15408149--15408187	15	2.4	17	79	20	55	38	17	0	43	1.50
15408153--15408187	15	2.2	16	95	5	63	37	17	0	45	1.48
15409613--15409656	22	1.9	24	86	9	65	40	9	2	47	1.48
15413768--15413826	16	3.6	16	80	13	66	40	0	3	55	1.16
15417968--15418000	5	6.8	5	89	3	50	39	0	24	36	1.56
15425377--15425571	98	2.0	98	95	0	354	36	24	10	28	1.88
15441411--15441574	49	3.4	49	68	9	147	26	13	15	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441419--15441612	96	2.0	97	93	1	336	24	14	15	45	1.84
15442112--15442173	19	3.3	19	68	4	63	38	12	1	46	1.52
15442100--15442174	37	2.0	37	97	0	141	40	12	2	45	1.55
15442279--15442342	31	2.2	30	86	8	87	42	1	12	43	1.52
15442292--15442358	31	2.2	31	88	0	98	35	4	11	47	1.61
15442423--15442650	76	3.0	76	96	1	417	35	7	14	41	1.76
15443023--15443110	44	2.0	44	86	4	124	42	11	14	31	1.82
15445002--15445138	27	5.1	27	74	7	91	37	18	24	18	1.93
15448950--15448979	12	2.6	12	94	5	53	53	10	0	36	1.35
15451001--15451045	23	1.9	24	81	4	56	33	8	0	57	1.30
15460101--15460202	41	2.6	40	83	6	127	33	3	10	51	1.55
15462205--15462321	57	2.1	56	83	3	144	44	7	20	27	1.78
15470879--15470913	11	3.3	11	96	4	63	34	22	17	25	1.96
15486404--15486453	22	2.3	23	83	13	61	40	2	10	48	1.48
15486788--15486820	3	11.0	3	100	0	66	66	0	0	33	0.92
15488381--15489008	51	12.5	51	83	3	705	29	23	16	30	1.96
15491715--15492016	50	5.9	50	79	6	291	21	28	23	27	1.99
15491727--15492015	106	2.8	106	91	3	437	20	28	23	27	1.99
15491719--15492057	156	2.2	152	79	6	349	22	27	22	27	1.99
15513047--15513084	10	3.6	10	86	13	58	60	2	0	36	1.11
15513092--15513140	19	2.6	20	81	18	61	36	2	0	61	1.08
15517163--15517197	15	2.2	16	90	5	54	40	0	22	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15522492--15522632	28	5.1	28	86	3	162	26	29	10	33	1.90
15528505--15528549	22	2.0	22	83	8	56	40	4	0	55	1.20
15531185--15531269	13	6.5	13	75	2	53	31	24	2	41	1.68
15531200--15531269	27	2.7	26	80	4	77	31	24	1	42	1.63
15533852--15533893	19	2.2	19	86	0	57	59	9	11	19	1.59
15536730--15536826	25	3.8	25	79	5	97	27	24	16	30	1.96
15537956--15537985	16	1.9	16	93	6	53	30	0	20	50	1.49
15546954--15547027	26	2.8	27	76	15	82	24	18	25	31	1.98
15552681--15552754	26	2.8	27	76	15	82	24	18	25	31	1.98
15558023--15558085	20	3.2	20	82	8	83	39	23	20	15	1.91
15558013--15558098	40	2.2	40	85	4	111	43	20	18	17	1.89
15561663--15561780	55	2.1	56	93	1	202	24	23	19	32	1.98
15563177--15563237	29	2.1	29	96	0	113	29	6	21	42	1.78
15566318--15566367	18	2.8	18	71	0	55	30	12	34	24	1.91
15566516--15566552	18	2.1	18	89	0	56	21	10	32	35	1.88
15566309--15566679	198	1.9	198	92	0	625	29	14	29	26	1.95
15566789--15566863	33	2.3	33	88	0	105	30	20	24	25	1.98
15567103--15567144	18	2.3	18	87	0	57	33	14	35	16	1.89
15566822--15567290	198	2.4	198	88	2	683	30	15	27	26	1.96
15567889--15571237	901	3.7	901	94	0	5961	40	15	17	26	1.90
15571060--15571419	182	2.0	181	93	0	621	44	14	15	25	1.85
15572200--15572235	18	2.0	18	88	0	54	38	11	22	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15573000--15573049	18	2.8	18	87	0	64	40	10	26	24	1.86
15573112--15574080	210	4.8	210	81	7	1073	37	15	23	23	1.92
15573494--15574108	192	3.2	192	82	3	765	37	14	24	23	1.92
15574326--15574388	18	3.5	18	80	8	74	41	9	26	22	1.84
15574750--15575108	165	2.2	165	92	0	583	38	17	20	24	1.93
15574754--15575177	165	2.6	165	86	3	505	38	16	20	23	1.93
15575154--15575195	18	2.3	18	87	0	66	42	11	28	16	1.84
15578823--15578939	41	2.9	39	84	6	128	24	15	28	31	1.95
15582472--15582520	9	5.3	10	90	9	70	65	0	0	34	0.93
15582458--15582520	17	3.6	18	79	12	69	63	1	0	34	1.04
15582458--15582522	9	7.3	9	76	13	64	63	1	0	35	1.04
15582845--15582887	9	4.5	10	81	18	56	62	0	2	34	1.08
15582810--15582882	36	2.0	36	81	5	85	60	1	1	36	1.14
15582853--15582962	21	4.8	22	75	18	75	63	4	2	29	1.28
15582853--15583218	10	36.5	10	67	13	119	60	4	3	31	1.33
15582854--15582933	11	7.5	11	68	20	53	66	3	2	27	1.22
15582982--15583019	19	2.0	20	84	5	51	52	0	0	47	1.00
15583753--15583909	9	17.0	9	70	16	76	34	1	3	60	1.23
15583849--15583924	17	4.2	17	76	18	57	32	1	2	63	1.17
15584335--15584405	28	2.4	29	79	9	83	28	9	14	47	1.75
15593066--15593243	3	59.3	3	100	0	356	66	0	0	33	0.92
15594213--15594246	15	2.3	15	89	0	50	61	0	2	35	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15601055--15601205	42	3.6	42	82	0	167	31	23	19	25	1.98
15603191--15603249	26	2.3	26	82	5	66	22	13	33	30	1.92
15606121--15606150	12	2.5	12	94	0	51	6	30	40	23	1.80
15615550--15615703	28	5.5	28	94	1	247	33	27	12	27	1.92
15644561--15644663	54	1.9	54	97	0	197	27	17	23	32	1.97
15646462--15646522	23	2.7	23	86	0	77	42	26	14	16	1.87
15671225--15671252	14	2.0	14	100	0	56	50	28	14	7	1.69
15672691--15672730	21	2.0	20	85	5	53	45	2	5	47	1.38
15677039--15677137	36	2.8	35	85	3	108	16	13	36	34	1.87
15677038--15677137	35	2.8	36	83	3	121	16	13	37	34	1.87
15677077--15677154	36	2.2	36	88	0	111	14	10	38	37	1.80
15684175--15684238	14	4.3	15	75	16	62	53	3	4	39	1.38
15684825--15684863	12	3.2	12	89	7	60	43	0	0	56	0.99
15685434--15685472	18	2.1	19	90	4	62	30	7	5	56	1.49
15685827--15685862	7	5.1	7	93	0	63	30	16	0	52	1.44
15685861--15685889	6	4.8	6	100	0	58	17	0	13	68	1.20
15691665--15691707	14	3.0	14	83	10	52	81	2	0	16	0.79
15693006--15693041	18	2.1	16	90	10	54	33	5	0	61	1.19
15692993--15693058	28	2.4	27	78	12	71	36	6	1	56	1.34
15693090--15693144	28	2.0	28	82	13	69	34	12	1	50	1.51
15694654--15694685	14	2.2	15	94	5	57	31	12	6	50	1.65
15695713--15695766	27	2.0	27	89	7	83	44	0	31	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702770--15702821	27	2.0	26	84	3	68	42	0	19	38	1.51
15702659--15703071	93	4.5	93	93	0	652	42	0	14	42	1.51
15702863--15702914	27	2.0	26	84	3	68	42	0	19	38	1.51
15702956--15703007	27	2.0	26	84	3	68	42	0	19	38	1.51
15705842--15705925	25	3.4	25	79	0	105	29	21	25	23	1.99
15710554--15710596	18	2.4	18	88	0	59	41	44	2	11	1.53
15710634--15710888	6	42.5	6	100	0	510	67	16	0	16	1.24
15710927--15710967	9	4.6	9	90	0	64	24	9	24	41	1.85
15710926--15710967	18	2.3	18	100	0	84	23	9	23	42	1.83
15711129--15711153	12	2.1	12	100	0	50	16	24	36	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161