genome.fa.s20.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  107  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29873591--29873641	27	2.0	26	85	11	70	56	0	7	35	1.28
29889485--29889531	22	2.1	22	100	0	94	53	14	12	19	1.73
29903688--29903723	18	1.9	19	88	5	56	55	11	0	33	1.35
29920306--29920400	45	2.1	45	80	7	104	26	23	18	31	1.98
29924680--29924720	20	2.0	21	95	4	75	24	19	36	19	1.95
29929896--29930171	27	10.2	26	80	6	268	44	17	19	18	1.87
29929896--29930171	54	5.1	55	86	3	305	44	17	19	18	1.87
29929896--29930169	81	3.4	80	84	7	322	44	17	18	18	1.87
29930501--29930592	28	3.2	28	81	7	112	27	23	20	28	1.99
29942947--29943188	50	4.8	50	88	1	324	22	30	21	26	1.98
29946079--29946355	27	10.3	27	82	0	313	44	18	18	19	1.88
29946079--29946325	81	3.0	81	86	2	352	43	18	19	19	1.89
29946501--29946573	26	2.8	27	83	4	78	19	23	20	36	1.95
29946684--29946773	30	3.0	30	85	4	112	25	25	21	27	1.99
29948508--29948556	24	2.0	24	84	7	64	48	0	4	46	1.20
29957669--29957697	6	4.8	6	100	0	58	31	0	0	68	0.89
29961747--29962007	39	6.7	38	84	3	281	17	30	19	32	1.94
29961747--29961993	78	3.2	78	85	1	345	17	31	19	32	1.94
29961747--29961987	117	2.1	116	89	2	367	16	31	19	32	1.94
29961887--29961987	19	5.2	19	69	4	67	13	31	18	35	1.90
29963314--29963852	45	12.0	45	92	0	801	30	15	23	30	1.95
29963864--29963977	44	2.6	44	90	2	176	34	21	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29963868--29964026	44	3.6	42	78	13	142	33	20	22	22	1.97
29965409--29965459	3	16.7	3	76	11	50	33	3	1	60	1.26
29965409--29965459	21	2.4	21	86	3	66	33	3	1	60	1.26
29968260--29968354	36	2.6	35	77	9	93	22	22	25	30	1.99
29977994--29978028	16	2.1	17	94	5	63	54	0	0	45	0.99
29978260--29978301	17	2.4	17	84	11	50	64	0	35	0	0.94
29978260--29978301	14	2.9	14	86	10	50	64	0	35	0	0.94
29978463--29978856	27	18.0	20	66	23	149	31	0	12	54	1.42
29978562--29978838	49	6.2	42	78	14	143	30	0	13	55	1.44
29978656--29978933	27	11.8	25	71	22	187	30	1	13	54	1.46
29978598--29978844	49	5.2	49	87	5	346	31	0	12	54	1.44
29978602--29978838	94	2.5	96	93	4	417	31	0	12	55	1.43
29978770--29978980	49	4.4	47	82	10	202	31	0	15	53	1.46
29978725--29978933	115	1.8	115	97	0	400	32	0	13	53	1.46
29978863--29978912	22	2.5	19	76	17	55	32	2	14	52	1.53
29978463--29978857	19	20.2	19	67	23	164	31	0	12	54	1.42
29978725--29978980	115	2.1	114	90	5	359	32	0	14	52	1.48
29982143--29982187	22	2.1	21	91	4	72	0	33	2	64	1.06
29982145--29982196	22	2.8	18	75	25	54	0	36	1	61	1.07
29982253--29982332	27	3.0	27	90	3	117	25	36	18	20	1.95
29983916--29983958	15	2.9	15	85	0	50	46	4	20	27	1.71
29988606--29988643	16	2.2	18	90	9	62	71	5	0	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29992288--29992323	6	6.0	6	93	0	54	50	0	16	33	1.46
29996074--29996146	29	2.5	28	80	12	85	41	16	4	38	1.67
29999374--29999424	24	2.2	23	82	3	57	27	5	9	56	1.54
30000126--30000467	116	2.9	116	84	1	445	29	15	21	33	1.94
30004947--30004975	14	2.1	14	93	6	51	34	0	10	55	1.34
30005788--30006039	43	5.9	43	82	1	290	23	15	30	29	1.96
30005790--30006039	129	1.9	129	86	3	351	24	16	30	29	1.96
30008560--30008600	18	2.4	17	84	8	55	51	19	0	29	1.47
30009391--30009500	48	2.3	48	89	6	186	43	7	8	40	1.62
30010084--30010126	18	2.4	18	88	0	59	44	9	27	18	1.80
30010774--30010799	7	3.7	7	100	0	52	57	15	0	26	1.38
30011971--30012023	11	4.7	12	86	6	67	45	1	30	22	1.63
30011973--30012025	22	2.5	21	88	11	81	47	1	30	20	1.61
30012982--30013048	34	1.9	35	90	3	109	44	13	8	32	1.75
30016647--30016683	18	2.1	18	90	10	58	24	5	29	40	1.77
30019682--30019736	15	3.9	15	73	26	57	0	29	1	69	0.99
30020470--30020513	20	2.2	20	88	8	63	68	0	27	4	1.09
30025116--30025179	9	6.9	9	77	10	58	59	4	1	34	1.28
30025094--30025179	9	10.0	8	75	21	52	61	4	1	32	1.24
30025107--30025179	27	2.6	28	81	10	71	58	4	1	35	1.25
30025106--30025179	18	4.1	17	78	14	60	59	4	1	35	1.25
30025199--30025257	19	3.3	18	71	19	52	66	3	1	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30025746--30025880	40	3.3	39	87	7	198	36	1	0	61	1.10
30025775--30025832	29	2.0	29	83	6	73	36	3	0	60	1.14
30025764--30025870	11	10.4	11	72	21	81	38	1	0	59	1.08
30026191--30026249	32	1.9	30	86	6	82	30	1	6	61	1.32
30026274--30026378	9	11.6	8	73	19	59	28	3	1	65	1.20
30026332--30026378	16	2.8	17	81	12	53	25	4	2	68	1.19
30039583--30039707	45	2.8	44	86	3	162	42	13	20	23	1.88
30040636--30040730	48	2.0	48	89	0	145	31	30	17	20	1.96
30042057--30042121	25	2.6	25	90	0	85	35	20	26	18	1.95
30059264--30059298	16	2.2	16	100	0	70	37	0	5	57	1.23
30063882--30063960	31	2.5	31	83	0	86	20	17	32	29	1.95
30066494--30066556	33	1.9	33	96	0	117	23	17	14	44	1.85
30068956--30069016	30	2.0	30	100	0	122	29	3	13	54	1.55
30081388--30081444	20	2.8	20	91	0	87	24	29	0	45	1.53
30081489--30081529	21	2.0	21	90	0	64	43	17	9	29	1.80
30086078--30086135	29	2.0	29	100	0	116	24	17	17	41	1.90
30088988--30089102	54	2.1	54	85	6	153	42	20	17	19	1.89
30088996--30089103	27	4.0	27	83	4	137	41	20	17	20	1.90
30097648--30097704	21	2.9	19	82	10	78	31	26	5	36	1.79
30098207--30098256	25	1.9	27	92	8	86	54	4	26	16	1.59
30108818--30108918	46	2.2	46	83	0	130	29	13	12	43	1.82
30109924--30109965	21	2.0	21	90	0	66	28	21	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30118889--30118945	10	5.2	11	74	21	57	21	35	0	43	1.52
30118906--30118961	22	2.5	22	97	2	103	28	32	0	39	1.57
30118933--30119036	51	2.0	51	98	0	199	28	26	0	44	1.55
30120180--30120204	7	3.6	7	100	0	50	28	0	12	60	1.32
30121456--30121680	50	4.5	50	70	20	186	46	24	0	28	1.53
30121402--30121940	23	21.9	23	72	20	364	46	23	0	29	1.53
30121422--30121781	74	4.9	74	92	2	582	46	24	0	29	1.53
30121422--30121781	147	2.4	148	92	2	600	46	24	0	29	1.53
30121673--30121857	51	3.6	50	82	8	237	47	23	0	29	1.52
30121526--30121940	126	3.3	127	81	9	503	46	24	0	29	1.53
30121790--30121840	22	2.5	22	87	9	72	49	25	0	25	1.51
30121654--30121935	103	2.8	100	85	9	385	46	23	0	30	1.53
30121654--30121903	103	2.5	99	90	7	409	47	22	0	30	1.52
30125957--30126029	11	7.1	10	74	11	51	53	1	1	43	1.17
30125963--30126039	33	2.5	29	80	12	82	55	1	2	40	1.22
30125985--30126048	21	3.0	21	77	15	69	54	0	1	43	1.09
30125958--30126048	42	2.1	42	82	9	105	51	1	2	45	1.20
30125957--30126030	10	7.3	10	72	15	55	52	1	1	44	1.17
30125958--30126071	43	2.7	40	75	15	104	50	1	1	45	1.22
30127902--30127945	19	2.4	19	84	3	63	34	2	0	63	1.07
30127905--30127946	18	2.3	18	88	8	59	35	2	0	61	1.09
30137899--30138092	50	3.9	50	82	2	212	27	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30139253--30139345	39	2.5	37	80	7	98	27	29	22	20	1.98
30140433--30140466	17	2.1	16	88	5	50	2	14	5	76	1.09
30140455--30140504	13	3.6	14	76	12	50	18	12	0	70	1.17
30140654--30140690	14	2.4	17	86	13	53	51	0	0	48	1.00
30144939--30145036	40	2.4	42	77	6	110	22	25	30	21	1.99
30147326--30147359	17	2.0	17	88	0	50	35	17	11	35	1.87
30148020--30148101	24	3.5	24	91	5	125	41	21	21	14	1.89
30148324--30148360	2	18.5	2	100	0	74	51	0	0	48	1.00
30149265--30149336	5	14.4	5	75	20	62	56	4	0	38	1.18
30149266--30149308	19	2.3	19	92	8	70	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189