genome.fa.s20.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Length:  56457815

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   

This is table  113  of  189  ( 22580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31629434--31629564	40	3.3	39	84	6	165	30	27	18	23	1.98
31629397--31629617	80	2.8	80	78	8	184	28	26	19	25	1.99
31635748--31635947	82	2.5	80	80	4	213	21	28	14	36	1.92
31635731--31635937	40	5.1	40	72	5	132	20	29	14	35	1.92
31645059--31645114	26	2.2	26	93	0	94	30	14	14	41	1.85
31661724--31661923	93	2.2	93	84	5	253	19	4	31	45	1.70
31661726--31661927	48	4.3	46	70	13	128	18	4	30	46	1.69
31661814--31661927	23	5.0	21	72	13	84	19	3	32	44	1.67
31661872--31661934	22	2.8	22	79	11	65	14	3	34	47	1.60
31664161--31664600	47	9.3	47	88	4	593	26	30	10	32	1.89
31664172--31664594	96	4.5	96	91	2	644	26	31	10	31	1.90
31674963--31675047	38	2.2	38	83	6	100	16	16	28	38	1.90
31689327--31689367	14	2.9	15	82	13	52	41	0	36	21	1.54
31690451--31690595	27	5.4	27	84	1	175	45	16	15	22	1.85
31690635--31690700	25	2.6	25	97	0	123	25	10	16	46	1.79
31698265--31698294	15	2.0	15	100	0	60	20	26	13	40	1.89
31706554--31706643	20	4.2	20	76	15	74	10	25	14	50	1.74
31714557--31714717	27	6.0	27	82	0	196	23	18	17	40	1.90
31714555--31714718	54	3.0	54	83	0	220	24	17	17	40	1.90
31714568--31714723	81	1.9	81	89	0	240	23	17	16	42	1.89
31716637--31716711	22	3.4	22	80	9	71	46	32	5	16	1.69
31716646--31716792	23	6.4	22	72	12	93	41	34	5	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31716646--31716860	48	4.6	47	76	14	194	42	33	5	19	1.73
31716651--31716863	93	2.3	94	86	4	290	41	34	5	18	1.73
31727145--31727321	43	4.1	43	80	2	203	23	17	27	31	1.97
31727157--31727322	86	1.9	86	86	0	233	25	18	26	30	1.98
31728212--31728257	23	2.0	23	86	0	65	41	26	4	28	1.74
31738289--31738323	18	1.9	18	88	0	52	8	22	8	60	1.54
31743294--31743352	18	3.2	19	77	17	61	64	3	8	23	1.37
31743299--31743353	20	2.8	19	76	10	58	67	1	7	23	1.26
31743562--31743593	17	1.9	16	93	6	55	53	3	0	43	1.16
31743805--31743857	27	2.0	27	88	7	81	64	5	5	24	1.38
31752411--31752455	18	2.5	18	92	0	72	2	60	0	37	1.09
31759246--31759308	28	2.3	27	83	8	81	38	1	3	57	1.24
31759741--31759983	114	2.1	113	87	0	369	26	23	24	25	2.00
31759923--31760035	41	2.8	41	86	0	154	21	16	31	30	1.95
31759812--31760145	155	2.2	155	91	0	533	24	20	27	27	1.99
31759967--31760326	114	3.1	114	88	1	515	23	20	26	28	1.99
31759758--31760259	269	1.9	268	90	0	806	25	21	26	25	2.00
31760015--31760573	302	1.8	303	86	1	800	25	22	25	26	2.00
31760236--31760410	74	2.4	74	84	0	235	25	22	24	28	1.99
31760118--31760512	188	2.1	188	86	1	560	24	22	25	27	2.00
31760317--31760573	115	2.2	114	86	0	352	26	22	24	26	2.00
31764874--31764924	21	2.4	21	86	0	66	33	13	47	5	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31764834--31765010	87	2.0	87	90	0	273	38	16	31	13	1.87
31764846--31765036	87	2.2	86	85	5	242	40	17	28	13	1.87
31765427--31765451	13	1.9	13	100	0	50	48	16	16	20	1.82
31765387--31765494	56	1.9	56	90	0	171	34	19	25	21	1.96
31765440--31765532	43	2.2	43	94	0	159	33	18	24	23	1.97
31765514--31765559	22	2.1	22	91	0	74	43	26	19	10	1.84
31765713--31765822	53	2.1	53	100	0	220	32	15	9	42	1.78
31777865--31777922	30	1.9	30	82	6	73	43	10	20	25	1.84
31778134--31778160	13	2.1	13	100	0	54	29	0	7	62	1.22
31778259--31778550	50	5.9	50	85	2	356	26	21	30	21	1.98
31789793--31789943	41	3.6	41	82	6	169	29	14	19	35	1.92
31791372--31791425	22	2.5	22	87	6	74	18	22	16	42	1.89
31793897--31793938	17	2.5	17	96	3	77	35	9	0	54	1.33
31802436--31802482	4	11.5	4	86	4	67	70	0	0	29	0.88
31804114--31804158	16	2.8	16	96	3	81	28	4	4	62	1.34
31805088--31805270	40	4.5	40	79	11	167	37	2	0	60	1.09
31805149--31805221	30	2.5	29	93	6	121	31	1	0	67	1.00
31805207--31805270	10	6.1	10	77	13	58	43	1	0	54	1.09
31805170--31805233	30	2.2	30	85	2	85	34	0	0	65	0.93
31805208--31805270	11	5.9	11	76	14	69	42	1	0	55	1.09
31805121--31805253	70	1.9	69	85	6	178	34	1	0	63	1.03
31812953--31813007	21	2.7	21	78	13	60	40	9	3	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31812958--31813021	22	2.9	22	71	13	60	35	9	3	51	1.50
31817114--31817148	3	11.7	3	100	0	70	34	0	0	65	0.93
31817226--31817280	21	2.7	21	78	13	60	40	9	1	49	1.45
31819089--31819115	5	5.4	5	100	0	54	62	18	0	18	1.32
31820054--31820096	19	2.3	19	79	0	50	32	0	4	62	1.15
31832399--31833250	44	19.7	44	70	13	349	29	20	23	27	1.99
31832364--31833272	217	4.2	217	90	2	1391	28	21	22	27	1.99
31833642--31833673	5	6.4	5	100	0	64	62	18	0	18	1.33
31838133--31838269	27	5.1	26	79	5	139	34	13	27	25	1.93
31838133--31838279	54	2.7	54	79	2	170	33	13	27	25	1.93
31854924--31855105	40	4.6	40	78	12	180	24	27	22	25	2.00
31854924--31855106	79	2.3	81	79	9	198	25	27	22	25	2.00
31862975--31863159	41	4.6	40	80	11	209	24	27	22	24	2.00
31862975--31863160	80	2.3	82	83	8	231	25	27	22	24	2.00
31864888--31864926	20	2.0	20	94	0	69	25	7	20	46	1.77
31875956--31876042	42	2.1	42	91	0	138	22	25	25	26	2.00
31882631--31882772	65	2.2	65	96	2	259	41	6	11	40	1.67
31883743--31883996	109	2.3	109	87	2	359	35	18	14	31	1.92
31884320--31884361	16	2.6	17	81	7	52	52	4	4	38	1.44
31884977--31885005	15	2.0	15	93	6	51	6	51	34	6	1.55
31886136--31886332	44	4.5	44	69	16	133	27	20	20	30	1.98
31886173--31886988	85	9.4	85	73	10	510	26	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31886079--31886543	129	3.6	129	89	1	691	27	20	20	31	1.97
31886213--31886986	44	17.8	44	72	9	410	26	22	21	30	1.98
31886098--31887637	129	11.8	128	73	10	645	26	22	20	30	1.98
31886568--31887639	131	8.2	131	71	10	333	26	22	20	29	1.99
31886734--31887815	218	5.0	218	95	0	1876	26	22	20	29	1.98
31886435--31887985	87	17.8	87	72	9	562	27	22	20	29	1.98
31886734--31887815	437	2.5	436	94	0	1885	26	22	20	29	1.98
31886903--31887985	131	8.3	130	71	10	565	27	22	20	29	1.98
31887736--31887985	44	5.9	42	71	12	109	28	22	18	30	1.98
31887566--31888032	175	2.7	172	86	3	636	27	22	19	30	1.98
31889239--31889289	6	8.3	6	77	18	52	13	15	0	70	1.17
31889236--31889282	7	7.0	7	85	9	71	14	17	0	68	1.22
31889239--31889281	13	3.3	13	93	0	77	13	16	0	69	1.19
31889236--31889282	20	2.3	20	89	7	69	14	17	0	68	1.22
31889242--31889297	13	4.6	13	86	10	75	12	17	0	69	1.18
31890096--31890142	24	1.9	24	91	4	76	4	10	2	82	0.88
31893695--31893972	109	2.6	109	90	0	441	34	20	15	29	1.93
31894285--31894326	16	2.6	17	81	7	52	52	4	4	38	1.44
31898299--31898367	34	2.0	34	97	0	129	23	18	26	31	1.97
31899229--31899335	25	4.5	25	77	13	73	2	25	20	51	1.61
31899244--31899280	19	1.9	19	94	0	65	5	27	10	56	1.55
31902450--31902502	15	3.6	15	80	14	74	50	9	0	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31902433--31902507	15	4.9	15	73	18	66	48	10	0	41	1.38
31902433--31902507	29	2.5	29	91	6	114	48	10	0	41	1.38
31903389--31903454	18	3.7	18	93	0	114	34	12	10	42	1.77
31903878--31904052	72	2.4	72	81	7	221	27	5	11	55	1.58
31906087--31906150	13	4.9	13	84	0	92	35	25	9	29	1.87
31909437--31909467	16	1.9	16	93	0	53	35	0	3	61	1.12
31912993--31913039	22	2.1	22	100	0	94	36	29	4	29	1.77
31917737--31917780	23	1.9	22	82	17	54	36	25	0	38	1.56
31917825--31917913	45	2.0	45	90	0	142	34	23	16	24	1.95
31917924--31918110	51	3.7	50	74	9	191	30	25	17	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189